View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1596_low_107 (Length: 245)

Name: NF1596_low_107
Description: NF1596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1596_low_107
NF1596_low_107
[»] chr7 (4 HSPs)
chr7 (10-238)||(7566112-7566340)
chr7 (10-238)||(7572519-7572747)
chr7 (10-238)||(7581313-7581541)
chr7 (9-231)||(7584710-7584930)


Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 10 - 238
Target Start/End: Complemental strand, 7566340 - 7566112
Alignment:
Q  10 acatcatcatagaagtcattttgaacttcttcgatcttggcgattaactgagccctatccatattctttaggtcgacaacttcatgagctccacgagcat 109  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7566340 acatcatcatagaagtcattttgaacttcttcgatcttggcggttaactgagccctatccatattctttaggtcgacaacttcatgagctccacgagcat 7566241  T
Q  110 cattgtctccccgtgctttattcaacaaaaactttaaatccctattctcctcttcaagagtcgccaacttgccatttagctcttcaacaatcttccttga 209  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  7566240 cattgtctccccgtgctttattcaacaacaactttaaatccctattctcctcttcaagagtcgccaacctgccatttagctcttcaacaatcttccttga 7566141  T
Q  210 tccttccagattcttctctaaggcatcaa 238  Q
    |||||||||||||||||||||| ||||||    
T  7566140 tccttccagattcttctctaagacatcaa 7566112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 10 - 238
Target Start/End: Complemental strand, 7572747 - 7572519
Alignment:
Q  10 acatcatcatagaagtcattttgaacttcttcgatcttggcgattaactgagccctatccatattctttaggtcgacaacttcatgagctccacgagcat 109  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7572747 acatcatcatagaagtcattttgaacttcttcgatcttggcggttaactgagccctatccatattctttaggtcgacaacttcatgagctccacgagcat 7572648  T
Q  110 cattgtctccccgtgctttattcaacaaaaactttaaatccctattctcctcttcaagagtcgccaacttgccatttagctcttcaacaatcttccttga 209  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  7572647 cattgtctccccgtgctttattcaacaacaactttaaatccctattctcctcttcaagagtcgccaacctgccatttagctcttcaacaatcttccttga 7572548  T
Q  210 tccttccagattcttctctaaggcatcaa 238  Q
    |||||||||||||||||||||| ||||||    
T  7572547 tccttccagattcttctctaagacatcaa 7572519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 10 - 238
Target Start/End: Complemental strand, 7581541 - 7581313
Alignment:
Q  10 acatcatcatagaagtcattttgaacttcttcgatcttggcgattaactgagccctatccatattctttaggtcgacaacttcatgagctccacgagcat 109  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7581541 acatcatcatagaagtcattttgaacttcttcgatcttggcggttaactgagccctatccatattctttaggtcgacaacttcatgagctccacgagcat 7581442  T
Q  110 cattgtctccccgtgctttattcaacaaaaactttaaatccctattctcctcttcaagagtcgccaacttgccatttagctcttcaacaatcttccttga 209  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  7581441 cattgtctccccgtgctttattcaacaacaactttaaatccctattctcctcttcaagagtcgccaacctgccatttagctcttcaacaatcttccttga 7581342  T
Q  210 tccttccagattcttctctaaggcatcaa 238  Q
    |||||||||||||||||||||| ||||||    
T  7581341 tccttccagattcttctctaagacatcaa 7581313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 9 - 231
Target Start/End: Complemental strand, 7584930 - 7584710
Alignment:
Q  9 gacatcatcatagaagtcattttgaacttcttcgatcttggcgattaactgagccctatccatattctttaggtcgacaacttcatgagctccacgagca 108  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||| ||||||||||||  ||||||  |||||||||||    
T  7584930 gacatcatcatagaagtcattttgaactacttcgatcttgacgattaactgagccttatccatattgtttaggtcgacattttcatg--ctccacgagca 7584833  T
Q  109 tcattgtctccccgtgctttattcaacaaaaactttaaatccctattctcctcttcaagagtcgccaacttgccatttagctcttcaacaatcttccttg 208  Q
    ||||||||| |||||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||  || | |||| |||| ||||||||||| ||    
T  7584832 tcattgtcttcccgtgatttattcaacaacaactttaaatccttattctcctcttcaagagtcgccaaccggcgagttagatctttaacaatcttccctg 7584733  T
Q  209 atccttccagattcttctctaag 231  Q
    ||||||||||||| |||| ||||    
T  7584732 atccttccagattgttctttaag 7584710  T

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