View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1596_low_11 (Length: 525)
Name: NF1596_low_11
Description: NF1596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1596_low_11 |
 | |
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| [»] scaffold0491 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 458; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 1 - 511
Target Start/End: Complemental strand, 1110549 - 1110037
Alignment:
| Q |
1 |
attcactgctcttatgatgtatgtattggacttcttagtacgtatatcagccttgtcaaatagcaagtgcaacgttgcgaaatttgaacaaattgctatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1110549 |
attcactgctcttatgatgtatgtattggacttcttggtacgtatatcagccttgtcaaatagcaagtgcaacgttgcgaaatttgaacaaattgctatt |
1110450 |
T |
|
| Q |
101 |
gtttcagggtttgctatttagttctaagtgttgtcaaatagcaactataacagcgacgtgccactatagcatagaggaatttaaaggtttcaacgaattg |
200 |
Q |
| |
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||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
1110449 |
gtttcgggatatgctatttagttctaagtgttgtcaaatagcaactataacagcgacgtgccactatagcatagaggaatttaaaggtttcaatgaattg |
1110350 |
T |
|
| Q |
201 |
atattattctgcattacactttttgtactaactgttgtcgaattgtggctataggcctataacactgtagtgtaatttgaacaaacctatattttcttga |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
1110349 |
atattattctgcattacactttttgtactaactgttgtcgaattgtggctataggcctatagcactgtagtgtaatttgaacaaacctatattttcttga |
1110250 |
T |
|
| Q |
301 |
atttgttgttgacaagagt--aaaatattggacatttgggcttgttagtttcatgcccctttatgcagtagcaatacactcatctttcaacatttgatgt |
398 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1110249 |
atttgttgttgacaagagtggtttatattggacatttggacttgttagtttcatgcccctttatgcagtagcaatacactcatctttcaacatttgatgt |
1110150 |
T |
|
| Q |
399 |
gtttactgccaaacattctatgcagaattttaaatggaacgctggagtagagttttgagagtcgcgttgctttctaacagcgagacattccttagagttg |
498 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
1110149 |
gtttactgccaaacattctatgcagaattttaaatggaacgctggagtagagttttgagagtcccgttgctttctaacagcgagacattccttagagttg |
1110050 |
T |
|
| Q |
499 |
gtgcatctctttg |
511 |
Q |
| |
|
||||||||||||| |
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|
| T |
1110049 |
gtgcatctctttg |
1110037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 149 - 367
Target Start/End: Original strand, 1539269 - 1539481
Alignment:
| Q |
149 |
aacagcgacgtgccactatagcatagaggaatttaaaggtttcaacgaattgatattattctgcattacactttttgtactaactgttgtcgaattgtgg |
248 |
Q |
| |
|
||||||||| | |||||||||| | | ||||||||||||||| || ||||| |||||||||||| |||||||||||||| |||||||| | |||||||| |
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|
| T |
1539269 |
aacagcgacataccactatagcgttgtggaatttaaaggtttaaataaattggtattattctgcaatacactttttgtaccaactgttgccaaattgtgg |
1539368 |
T |
|
| Q |
249 |
ctataggcctataacactgtagtgtaatttgaacaaacctatattttcttgaatttgttgttgacaagagt--aaaatattggacatttgggcttgttag |
346 |
Q |
| |
|
|||||| |||| ||||||| || ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |
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|
| T |
1539369 |
ctatag--------cactttagtgtagttagaacaaaattatattttcttgaatttgttgttgacaagagtggtttatattggacatttggacttgttag |
1539460 |
T |
|
| Q |
347 |
tttcatgcccctttatgcagt |
367 |
Q |
| |
|
|||||||| |||||||||||| |
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|
| T |
1539461 |
tttcatgctcctttatgcagt |
1539481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 405 - 456
Target Start/End: Original strand, 1539481 - 1539532
Alignment:
| Q |
405 |
tgccaaacattctatgcagaattttaaatggaacgctggagtagagttttga |
456 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||||||| ||||||||| |
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|
| T |
1539481 |
tgccaaacattctatgcagcatttttaatggaacgctggagtggagttttga |
1539532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0491 (Bit Score: 98; Significance: 5e-48; HSPs: 2)
Name: scaffold0491
Description:
Target: scaffold0491; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 69 - 254
Target Start/End: Original strand, 4379 - 4564
Alignment:
| Q |
69 |
gcaacgttgcgaaatttgaacaaattgctattgtttcagggtttgctatttagttctaagtgttgtcaaatagcaactataacagcgacgtgccactata |
168 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||||| || | |||||||||||||||||||| | ||||| |||||||||| ||||| | |||||||| |
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|
| T |
4379 |
gcaatgttccgaaatttgaacaaattgctattgtttcgggatatgctatttagttctaagtgtggccaaatgtcaactataacggcgacataccactata |
4478 |
T |
|
| Q |
169 |
gcatagaggaatttaaaggtttcaacgaattgatattattctgcattacactttttgtactaactgttgtcgaattgtggctatag |
254 |
Q |
| |
|
|| | | ||||||||||||||| || ||||| |||||||||||| |||||||||||||| |||||||||| |||||||||||||| |
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|
| T |
4479 |
gcgttgtggaatttaaaggtttaaataaattggtattattctgcaatacactttttgtaccaactgttgtcaaattgtggctatag |
4564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0491; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 332 - 446
Target Start/End: Original strand, 4577 - 4691
Alignment:
| Q |
332 |
atttgggcttgttagtttcatgcccctttatgcagtagcaatacactcatctttcaacatttgatgtgtttactgccaaacattctatgcagaattttaa |
431 |
Q |
| |
|
|||||| || ||||||||||||| |||||||||||||||||| |||||| |||| ||||||| ||||||||| | |||| |||||||||| ||||||| | |
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|
| T |
4577 |
atttggactcgttagtttcatgctcctttatgcagtagcaattcactcacctttgaacattttatgtgtttaataccaatcattctatgccgaattttta |
4676 |
T |
|
| Q |
432 |
atggaacgctggagt |
446 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
4677 |
atggaacgctggagt |
4691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 98; Significance: 5e-48; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 69 - 254
Target Start/End: Original strand, 18737680 - 18737865
Alignment:
| Q |
69 |
gcaacgttgcgaaatttgaacaaattgctattgtttcagggtttgctatttagttctaagtgttgtcaaatagcaactataacagcgacgtgccactata |
168 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||||| || | |||||||||||||||||||| | ||||| |||||||||| ||||| | |||||||| |
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|
| T |
18737680 |
gcaatgttccgaaatttgaacaaattgctattgtttcgggatatgctatttagttctaagtgtggccaaatgtcaactataacggcgacataccactata |
18737779 |
T |
|
| Q |
169 |
gcatagaggaatttaaaggtttcaacgaattgatattattctgcattacactttttgtactaactgttgtcgaattgtggctatag |
254 |
Q |
| |
|
|| | | ||||||||||||||| || ||||| |||||||||||| |||||||||||||| |||||||||| |||||||||||||| |
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|
| T |
18737780 |
gcgttgtggaatttaaaggtttaaaaaaattggtattattctgcaatacactttttgtaccaactgttgtcaaattgtggctatag |
18737865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 69 - 254
Target Start/End: Original strand, 18747538 - 18747723
Alignment:
| Q |
69 |
gcaacgttgcgaaatttgaacaaattgctattgtttcagggtttgctatttagttctaagtgttgtcaaatagcaactataacagcgacgtgccactata |
168 |
Q |
| |
|
|||| ||| |||||||||||||||||||||| ||||| || | |||||||||||||||||||| | ||||| |||||||||| ||||| | |||||||| |
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|
| T |
18747538 |
gcaatgttccgaaatttgaacaaattgctatagtttcgggatatgctatttagttctaagtgtggccaaatgtcaactataacggcgacataccactata |
18747637 |
T |
|
| Q |
169 |
gcatagaggaatttaaaggtttcaacgaattgatattattctgcattacactttttgtactaactgttgtcgaattgtggctatag |
254 |
Q |
| |
|
|| | | ||||||||||||||| || ||||| |||||||||||| |||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
18747638 |
gcgttgtggaatttaaaggtttaaataaattggtattattctgcaatacactttttgtaccaactgttgtcaaattgtggctatag |
18747723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 80 - 254
Target Start/End: Original strand, 18742585 - 18742759
Alignment:
| Q |
80 |
aaatttgaacaaattgctattgtttcagggtttgctatttagttctaagtgttgtcaaatagcaactataacagcgacgtgccactatagcatagaggaa |
179 |
Q |
| |
|
|||||||||||||||||||| ||||| || | |||||||||||||||||||| | ||||| |||||||||| ||||| | |||||||||| | | |||| |
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|
| T |
18742585 |
aaatttgaacaaattgctatagtttcgggatatgctatttagttctaagtgtggccaaatgtcaactataacggcgacataccactatagcgttgtggaa |
18742684 |
T |
|
| Q |
180 |
tttaaaggtttcaacgaattgatattattctgcattacactttttgtactaactgttgtcgaattgtggctatag |
254 |
Q |
| |
|
||||||||||| || ||||| |||||||||||| |||||||||||||| |||||||||| |||||||||||||| |
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|
| T |
18742685 |
tttaaaggtttaaataaattggtattattctgcaatacactttttgtaccaactgttgtcaaattgtggctatag |
18742759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 332 - 446
Target Start/End: Original strand, 18747736 - 18747850
Alignment:
| Q |
332 |
atttgggcttgttagtttcatgcccctttatgcagtagcaatacactcatctttcaacatttgatgtgtttactgccaaacattctatgcagaattttaa |
431 |
Q |
| |
|
|||||| || ||||||||||||| |||||||||||||||||| |||||| |||| ||||||| ||||||||| | |||| |||||||||| ||||||| | |
|
|
| T |
18747736 |
atttggactcgttagtttcatgctcctttatgcagtagcaattcactcacctttgaacattttatgtgtttaataccaatcattctatgccgaattttta |
18747835 |
T |
|
| Q |
432 |
atggaacgctggagt |
446 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
18747836 |
atggaacgctggagt |
18747850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 344 - 446
Target Start/End: Original strand, 18737890 - 18737992
Alignment:
| Q |
344 |
tagtttcatgcccctttatgcagtagcaatacactcatctttcaacatttgatgtgtttactgccaaacattctatgcagaattttaaatggaacgctgg |
443 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||||| | || ||||||| ||||||||| |||||| |||||||||| ||||||| ||||||||||||| |
|
|
| T |
18737890 |
tagtttcatgctcctttatgcagtagcaattcactcaccattgaacattttatgtgtttaatgccaatcattctatgccgaatttttaatggaacgctgg |
18737989 |
T |
|
| Q |
444 |
agt |
446 |
Q |
| |
|
||| |
|
|
| T |
18737990 |
agt |
18737992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 344 - 446
Target Start/End: Original strand, 18742784 - 18742886
Alignment:
| Q |
344 |
tagtttcatgcccctttatgcagtagcaatacactcatctttcaacatttgatgtgtttactgccaaacattctatgcagaattttaaatggaacgctgg |
443 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||||| |||| ||||||| ||||||||| |||||| |||||||||| ||||||| |||||||| |||| |
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|
| T |
18742784 |
tagtttcatgctcctttatgcagtagcaattcactcacctttgaacattttatgtgtttaatgccaatcattctatgccgaatttttaatggaacactgg |
18742883 |
T |
|
| Q |
444 |
agt |
446 |
Q |
| |
|
||| |
|
|
| T |
18742884 |
agt |
18742886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 144
Target Start/End: Original strand, 35199588 - 35199643
Alignment:
| Q |
89 |
caaattgctattgtttcagggtttgctatttagttctaagtgttgtcaaatagcaa |
144 |
Q |
| |
|
|||||||||||||||||| | | || ||||||||| ||||||||||||||||||| |
|
|
| T |
35199588 |
caaattgctattgtttcacgatacgcgatttagttcaaagtgttgtcaaatagcaa |
35199643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 79 - 149
Target Start/End: Original strand, 2732934 - 2733004
Alignment:
| Q |
79 |
gaaatttgaacaaattgctattgtttcagggtttgctatttagttctaagtgttgtcaaatagcaactata |
149 |
Q |
| |
|
||||||||||||||| |||||||||| | | ||||||||||| | || ||||||||||||||| ||||| |
|
|
| T |
2732934 |
gaaatttgaacaaatcgctattgttttgcgatatgctatttagtacaaaatgttgtcaaatagcagctata |
2733004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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