View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1596_low_111 (Length: 240)

Name: NF1596_low_111
Description: NF1596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1596_low_111
NF1596_low_111
[»] chr7 (12 HSPs)
chr7 (14-240)||(26298397-26298623)
chr7 (14-191)||(26278645-26278822)
chr7 (14-185)||(26129519-26129690)
chr7 (14-191)||(26251797-26251974)
chr7 (14-191)||(26243349-26243526)
chr7 (14-185)||(26121264-26121435)
chr7 (14-151)||(26156140-26156277)
chr7 (14-151)||(26180032-26180169)
chr7 (14-151)||(26192214-26192351)
chr7 (17-138)||(26204837-26204958)
chr7 (14-185)||(19102574-19102745)
chr7 (27-138)||(26224484-26224595)
[»] chr4 (1 HSPs)
chr4 (18-188)||(44904206-44904376)


Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 14 - 240
Target Start/End: Original strand, 26298397 - 26298623
Alignment:
Q  14 agagagcaaagaaatgaggatgagagcaaagaaacttagcgaggctgccaagaggactatagaagaaggtggagattcttacaacaacttgattcaattg 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26298397 agagagcaaagaaatgaggatgagagcaaagaaacttagcgaggctgccaagaggactatagaagaaggtggagattcttacaacaacttgattcaattg 26298496  T
Q  114 attgatgagctgaattcattgaagaaatctaaagcactcggtaataaacaagattagacgattcaaatgaagatgatgaaacatgcttctatccgaagtt 213  Q
    |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||    
T  26298497 attgatgagctgaaatcattgaagaaatctaaagcactctgtaataaacaagattagacaattcaaatgaagatcatgaaacatgcttctatccaaagtt 26298596  T
Q  214 caatgagatgaaacaaggtcgaatcat 240  Q
    |||||||||||||||| ||||||||||    
T  26298597 caatgagatgaaacaacgtcgaatcat 26298623  T

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Target: chr7; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 14 - 191
Target Start/End: Original strand, 26278645 - 26278822
Alignment:
Q  14 agagagcaaagaaatgaggatgagagcaaagaaacttagcgaggctgccaagaggactatagaagaaggtggagattcttacaacaacttgattcaattg 113  Q
    ||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||    
T  26278645 agagagcaaagaaatgaggatgagagcaaagaaacttggtgatgctgccaagaggactatagaggaaggtggacactcttacaacaacttgattcaattg 26278744  T
Q  114 attgatgagctgaattcattgaagaaatctaaagcactcggtaataaacaagattagacgattcaaatgaagatgatg 191  Q
    |||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||| ||||||| ||||||||||    
T  26278745 attgatgagctgaaatcattgaagaaatctaaagcactcgataataaaaaagattagacaattcaaacgaagatgatg 26278822  T

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Target: chr7; HSP #3
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 14 - 185
Target Start/End: Original strand, 26129519 - 26129690
Alignment:
Q  14 agagagcaaagaaatgaggatgagagcaaagaaacttagcgaggctgccaagaggactatagaagaaggtggagattcttacaacaacttgattcaattg 113  Q
    |||||||||||||||||||||||||||||| || ||| | |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  26129519 agagagcaaagaaatgaggatgagagcaaaaaagcttggtgaggctgccaagaggactattgaggaaggtggagattcttacaacaacttgattcaattg 26129618  T
Q  114 attgatgagctgaattcattgaagaaatctaaagcactcggtaataaacaagattagacgattcaaatgaag 185  Q
    |||||||||||||| ||||||||||||||||||||||| ||| | |||  ||||||||  | ||||||||||    
T  26129619 attgatgagctgaaatcattgaagaaatctaaagcacttggtgagaaagcagattagataagtcaaatgaag 26129690  T

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Target: chr7; HSP #4
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 14 - 191
Target Start/End: Original strand, 26251797 - 26251974
Alignment:
Q  14 agagagcaaagaaatgaggatgagagcaaagaaacttagcgaggctgccaagaggactatagaagaaggtggagattcttacaacaacttgattcaattg 113  Q
    ||||||||||||||||||||||||||||||||||||| |||| || ||||| ||||| ||||| |||||||||||||||||||||||||||||||| |||    
T  26251797 agagagcaaagaaatgaggatgagagcaaagaaacttggcgatgcagccaaaaggacgatagaggaaggtggagattcttacaacaacttgattcagttg 26251896  T
Q  114 attgatgagctgaattcattgaagaaatctaaagcactcggtaataaacaagattagacgattcaaatgaagatgatg 191  Q
    |||||||||||||| ||||||||||||| |||||| || ||| | ||   |||||||||||||| |||||||||||||    
T  26251897 attgatgagctgaaatcattgaagaaatataaagcgcttggtgaaaatgcagattagacgattccaatgaagatgatg 26251974  T

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Target: chr7; HSP #5
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 14 - 191
Target Start/End: Original strand, 26243349 - 26243526
Alignment:
Q  14 agagagcaaagaaatgaggatgagagcaaagaaacttagcgaggctgccaagaggactatagaagaaggtggagattcttacaacaacttgattcaattg 113  Q
    ||||||||||||||||||||||||||||||||||||| | || |||||||| ||||||||||| || ||||||||||||||||||||||||||||| |||    
T  26243349 agagagcaaagaaatgaggatgagagcaaagaaacttggtgatgctgccaaaaggactatagaggagggtggagattcttacaacaacttgattcagttg 26243448  T
Q  114 attgatgagctgaattcattgaagaaatctaaagcactcggtaataaacaagattagacgattcaaatgaagatgatg 191  Q
    |||||||||||||| || ||||||||||||||| | || | | | |||  ||||||||||||||| ||||||||||||    
T  26243449 attgatgagctgaaatcgttgaagaaatctaaaacgcttgatgagaaagcagattagacgattcagatgaagatgatg 26243526  T

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Target: chr7; HSP #6
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 14 - 185
Target Start/End: Original strand, 26121264 - 26121435
Alignment:
Q  14 agagagcaaagaaatgaggatgagagcaaagaaacttagcgaggctgccaagaggactatagaagaaggtggagattcttacaacaacttgattcaattg 113  Q
    ||||||||||||||||| ||||||||||||||||||| | |||||||||||||||| |||||| ||| ||||| |||||||||||||||||||||| |||    
T  26121264 agagagcaaagaaatgatgatgagagcaaagaaacttggtgaggctgccaagaggattatagaggaacgtggacattcttacaacaacttgattcagttg 26121363  T
Q  114 attgatgagctgaattcattgaagaaatctaaagcactcggtaataaacaagattagacgattcaaatgaag 185  Q
    |||||||||||||| ||||||||||||||||||||||| ||| | |||  ||||||||  | ||||||||||    
T  26121364 attgatgagctgaaatcattgaagaaatctaaagcacttggtgagaaagcagattagataagtcaaatgaag 26121435  T

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Target: chr7; HSP #7
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 14 - 151
Target Start/End: Original strand, 26156140 - 26156277
Alignment:
Q  14 agagagcaaagaaatgaggatgagagcaaagaaacttagcgaggctgccaagaggactatagaagaaggtggagattcttacaacaacttgattcaattg 113  Q
    ||||||||||| ||||||| ||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  26156140 agagagcaaagcaatgagggtgagagcaaagaaacttggtgatgctgccaagaggactatagaagaaggtggagattcttacaacaacttgattcagttg 26156239  T
Q  114 attgatgagctgaattcattgaagaaatctaaagcact 151  Q
    |||||||| ||||| |||||||||||||||||| ||||    
T  26156240 attgatgatctgaaatcattgaagaaatctaaaccact 26156277  T

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Target: chr7; HSP #8
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 14 - 151
Target Start/End: Original strand, 26180032 - 26180169
Alignment:
Q  14 agagagcaaagaaatgaggatgagagcaaagaaacttagcgaggctgccaagaggactatagaagaaggtggagattcttacaacaacttgattcaattg 113  Q
    ||||||||||||||||||||||||||||||||||||| | || ||| ||||||||||||| || |||||||||||||||||||||||||||||||| |||    
T  26180032 agagagcaaagaaatgaggatgagagcaaagaaacttggtgatgcttccaagaggactattgaggaaggtggagattcttacaacaacttgattcagttg 26180131  T
Q  114 attgatgagctgaattcattgaagaaatctaaagcact 151  Q
    |||||||||||||| ||||| ||||||||||| |||||    
T  26180132 attgatgagctgaaatcattaaagaaatctaaggcact 26180169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 14 - 151
Target Start/End: Original strand, 26192214 - 26192351
Alignment:
Q  14 agagagcaaagaaatgaggatgagagcaaagaaacttagcgaggctgccaagaggactatagaagaaggtggagattcttacaacaacttgattcaattg 113  Q
    ||||||||||||||||||||||||||||||||||||| | || ||| |||||||||||||||| ||||||||| |||| ||||||||||||||||| ||     
T  26192214 agagagcaaagaaatgaggatgagagcaaagaaacttggtgatgcttccaagaggactatagaggaaggtggacattcatacaacaacttgattcagttc 26192313  T
Q  114 attgatgagctgaattcattgaagaaatctaaagcact 151  Q
    |||||||||||||| ||| |||||||||||||||||||    
T  26192314 attgatgagctgaaatcactgaagaaatctaaagcact 26192351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 17 - 138
Target Start/End: Original strand, 26204837 - 26204958
Alignment:
Q  17 gagcaaagaaatgaggatgagagcaaagaaacttagcgaggctgccaagaggactatagaagaaggtggagattcttacaacaacttgattcaattgatt 116  Q
    |||||||||||||||||||||||||||||| ||| | || |||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  26204837 gagcaaagaaatgaggatgagagcaaagaagcttggtgatgctgccaagaagactatagaggaaggtggagattcttacaacaacttgattcagttgatt 26204936  T
Q  117 gatgagctgaattcattgaaga 138  Q
    |||||||| || ||||||||||    
T  26204937 gatgagctaaaatcattgaaga 26204958  T

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Target: chr7; HSP #11
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 14 - 185
Target Start/End: Complemental strand, 19102745 - 19102574
Alignment:
Q  14 agagagcaaagaaatgaggatgagagcaaagaaacttagcgaggctgccaagaggactatagaagaaggtggagattcttacaacaacttgattcaattg 113  Q
    ||||||||||||||||||||||||||||||||| ||| | || ||||| |||||||||||||| || |||||| | ||| |||||||||||||||  |||    
T  19102745 agagagcaaagaaatgaggatgagagcaaagaagcttggtgatgctgcaaagaggactatagaggagggtggacactctcacaacaacttgattctgttg 19102646  T
Q  114 attgatgagctgaattcattgaagaaatctaaagcactcggtaataaacaagattagacgattcaaatgaag 185  Q
    |||||||||||||| |||||||||||||||||  |||| ||| | |||  ||||||||  ||||||||||||    
T  19102645 attgatgagctgaaatcattgaagaaatctaagtcacttggtgagaaagcagattagataattcaaatgaag 19102574  T

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Target: chr7; HSP #12
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 27 - 138
Target Start/End: Original strand, 26224484 - 26224595
Alignment:
Q  27 atgaggatgagagcaaagaaacttagcgaggctgccaagaggactatagaagaaggtggagattcttacaacaacttgattcaattgattgatgagctga 126  Q
    |||||||||||||||||||| ||| | || ||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |    
T  26224484 atgaggatgagagcaaagaagcttggtgatgctgcaaagaagactatagaggaaggtggagattcttacaacaacttgattcaattgattgatgagctaa 26224583  T
Q  127 attcattgaaga 138  Q
    | ||||||||||    
T  26224584 aatcattgaaga 26224595  T

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Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 18 - 188
Target Start/End: Original strand, 44904206 - 44904376
Alignment:
Q  18 agcaaagaaatgaggatgagagcaaagaaacttagcgaggctgccaagaggactatagaagaaggtggagattcttacaacaacttgattcaattgattg 117  Q
    |||||||||||||||| ||||||||| ||  || |||| |||||||||||||||||||| ||||||||| | ||||||||||||||| |||| ||||| |    
T  44904206 agcaaagaaatgaggacgagagcaaaaaagtttggcgatgctgccaagaggactatagaggaaggtggacactcttacaacaacttggttcagttgatag 44904305  T
Q  118 atgagctgaattcattgaagaaatctaaagcactcggtaataaacaagattagacgattcaaatgaagatg 188  Q
    |||||||||| |||||||||||||| |||||||| ||| | |||  ||||||||  | | |||||||||||    
T  44904306 atgagctgaaatcattgaagaaatccaaagcacttggtgagaaagcagattagataactgaaatgaagatg 44904376  T

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