View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1596_low_113 (Length: 238)
Name: NF1596_low_113
Description: NF1596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1596_low_113 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 16770831 - 16770612
Alignment:
| Q |
19 |
gtgtagttaggaatcattaagaaaaagattaaagttttctctagtgatttcgtcaatgaaaatcattaagaaaggaaataaatcattgaatgctcttggt |
118 |
Q |
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| T |
16770831 |
gtgtagttaggaatcattaagaaaaagattaaagttttctctagtgatttcgtcaatgaaaatcattaagaaaggaaataaatcattgaatgctctcggt |
16770732 |
T |
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| Q |
119 |
gagcaattggagataatctttcggtcccttttgtaactatattgagaaaggggaagagaagaaaactggatttattcttgttgaacattgaaagctgatt |
218 |
Q |
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| T |
16770731 |
gagcaattggagataatcttccggtcccttttataattatattgagaaaggggaagagaagaaaactggatttattcttgttgaacattgaaagctgatt |
16770632 |
T |
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| Q |
219 |
tcctgtaattattttgcatc |
238 |
Q |
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| T |
16770631 |
tcctgtaattattttgcatc |
16770612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 29 - 234
Target Start/End: Complemental strand, 16777607 - 16777400
Alignment:
| Q |
29 |
gaatcattaagaaaaa---gattaaagttttctctagtgatttcgtcaatgaaaatcattaagaaaggaaataaatcattgaatgctcttggtgagcaat |
125 |
Q |
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|||||||||||||||| || |||| ||||| || ||||||||||||||||||| || |||||||||||||||| | ||||||||||||||||||| |
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| T |
16777607 |
gaatcattaagaaaaattagagtaaacttttccctggtgatttcgtcaatgaaaaatat-aagaaaggaaataaattaggcaatgctcttggtgagcaat |
16777509 |
T |
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| Q |
126 |
tggagataatctttcggtcccttttgtaactatattgagaaaggggaagagaagaaaactggatttattcttgttgaacattgaaagctgatttcctgta |
225 |
Q |
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||||||| ||||| ||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||| |
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| T |
16777508 |
tggagatgatcttccggtcccttttgtaactctattgaaaaaggggaagagaagaaaacttgatttattcttattgaacattgaaagctgatttcttgta |
16777409 |
T |
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| Q |
226 |
attattttg |
234 |
Q |
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| T |
16777408 |
attattttg |
16777400 |
T |
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