View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1596_low_114 (Length: 238)
Name: NF1596_low_114
Description: NF1596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1596_low_114 |
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Alignment Details
Target: chr2 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 18 - 217
Target Start/End: Original strand, 30989962 - 30990160
Alignment:
| Q |
18 |
agatgcgcaactcaaaatcccgacaaagagccgaagcattacaatgtcatctatttgcaaacttccaatcaatatgattgcaaatatgccgagaactccc |
117 |
Q |
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| T |
30989962 |
agatgcacaactcaaaatcccaacaaagagccgacgcattacaatgtcatctatttgcaaacttccaatcaatatgattgcaaatatgccaagaactccc |
30990061 |
T |
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| Q |
118 |
ataaaccatgcaatcattttcacctaatgaaaaatttgaaacacgacaacttagaaattaagcaatgattgtgtacagtttcaaacataatgcttgtata |
217 |
Q |
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| T |
30990062 |
atcagccatgcaagcattttcacctaatggaaaatttgaaacatgacaacttagtaattaaccaa-gatggtgtacagtttcaaacataatgcatgtata |
30990160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 104; Significance: 6e-52; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 18 - 133
Target Start/End: Original strand, 14207287 - 14207402
Alignment:
| Q |
18 |
agatgcgcaactcaaaatcccgacaaagagccgaagcattacaatgtcatctatttgcaaacttccaatcaatatgattgcaaatatgccgagaactccc |
117 |
Q |
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| T |
14207287 |
agatgcgcaactcaaaatcccaacaaagagccgacgcattacaatgtcatctatttgcaaacttccaatcaatatgattgcaaatatgccgagaactccc |
14207386 |
T |
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| Q |
118 |
ataaaccatgcaatca |
133 |
Q |
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| T |
14207387 |
ataagccatgcaatca |
14207402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 174 - 238
Target Start/End: Original strand, 14207406 - 14207470
Alignment:
| Q |
174 |
attaagcaatgattgtgtacagtttcaaacataatgcttgtatatattgagttatttgaagtcat |
238 |
Q |
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| T |
14207406 |
attaaccaatgattgtgtacagtttcaaacataatgcttgtatatattgagttattttaagtcat |
14207470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 18 - 100
Target Start/End: Original strand, 1195582 - 1195664
Alignment:
| Q |
18 |
agatgcgcaactcaaaatcccgacaaagagccgaagcattacaatgtcatctatttgcaaacttccaatcaatatgattgcaa |
100 |
Q |
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| T |
1195582 |
agatgcgcaactcaaagtcccaacaaagagccgacacattacaatgtcatctatttgcaaacttccaatcaatatgattgcaa |
1195664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 179 - 238
Target Start/End: Original strand, 1195661 - 1195720
Alignment:
| Q |
179 |
gcaatgattgtgtacagtttcaaacataatgcttgtatatattgagttatttgaagtcat |
238 |
Q |
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| T |
1195661 |
gcaatgattgtgtacagtttcaaccataatgcttgtatatattgagttatttgaagtcat |
1195720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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