View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1596_low_12 (Length: 519)
Name: NF1596_low_12
Description: NF1596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1596_low_12 |
 | |
|
| [»] scaffold1808 (1 HSPs) |
| | |
|
| [»] scaffold0105 (1 HSPs) |
| | |
|
| [»] scaffold0069 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 456; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 13 - 504
Target Start/End: Complemental strand, 51759835 - 51759344
Alignment:
| Q |
13 |
tgaagtttggtaattaatctatatttcaggcctattactcgtgagattgaacctatgttttgtcatgctagaacctattttgctgcttgattttgatctc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51759835 |
tgaagtttggtaattaatctatatttcaggcctattactcgtgagattgaacctatgttttgtcatgctagaacctattttgctgcttgattttgatctc |
51759736 |
T |
|
| Q |
113 |
taaaagcttcatcgtgacattgtgaagtatggattaacatcggagttgtttctggcatatattcaaaattgtcttctcaatccattcaacatagttattt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51759735 |
taaaagcttcatcgtgacattgtgaagtatggattaacttcggagttgtttctggtatatattcaaaattgtcttctcaatccattcaacatagttattt |
51759636 |
T |
|
| Q |
213 |
agatattactagcttacatgtatgatatcagttttgtacaaccaacttttgatttggaatgttagtataacagttggatgctgcccttttgatttagagt |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51759635 |
agatattactagcttacatgtatgatatcagttttgtacaaccaacttttgatttggaatgttagtataacagttggatgctgcccttttgatttagagt |
51759536 |
T |
|
| Q |
313 |
gttagtaatagcttcttgaatctttagatactgcatcagttcttactcttggttatgtataattgttgcttaatttatgttcccaactcacctaatgaca |
412 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
51759535 |
gttagtaatagcttgttgaatctttagatactgcatcagttcttactcttggttatgtataattgttgcttaatttatgttcccagctcacctaatgaca |
51759436 |
T |
|
| Q |
413 |
tgtgactatattatagtttatatgtgacaactgcttaagcatgcattatattgtttattttggcaggacaaaaagttgaatactgtaaaagg |
504 |
Q |
| |
|
||||||||| |||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
51759435 |
tgtgactatcttatagtttatatgtgacaactacttaagcatccattatattatttattttggcaggataaaaagttgaatactgtaaaagg |
51759344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 376; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 13 - 504
Target Start/End: Complemental strand, 6685235 - 6684744
Alignment:
| Q |
13 |
tgaagtttggtaattaatctatatttcaggcctattactcgtgagattgaacctatgttttgtcatgctagaacctattttgctgcttgattttgatctc |
112 |
Q |
| |
|
||||||||||||||||| || |||||||| ||||||| | ||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
6685235 |
tgaagtttggtaattaagctttatttcagacctattatacatgagattgaacttatgttttgtcatgctagaaccaattttgctggttgattttgatctc |
6685136 |
T |
|
| Q |
113 |
taaaagcttcatcgtgacattgtgaagtatggattaacatcggagttgtttctggcatatattcaaaattgtcttctcaatccattcaacatagttattt |
212 |
Q |
| |
|
||| |||||||| |||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
6685135 |
taagagcttcatgatgacattgtgaagtatggattaacttgggagttgtttttggcatatattcaaaattgtcttctcagtccattcaacatagttattt |
6685036 |
T |
|
| Q |
213 |
agatattactagcttacatgtatgatatcagttttgtacaaccaacttttgatttggaatgttagtataacagttggatgctgcccttttgatttagagt |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6685035 |
ggatattactagcttacatgtatgatatcagttttgtacaaccaacttttgatttggaatattagtataacagttggatgctgcccttttgatttagagt |
6684936 |
T |
|
| Q |
313 |
gttagtaatagcttcttgaatctttagatactgcatcagttcttactcttggttatgtataattgttgcttaatttatgttcccaactcacctaatgaca |
412 |
Q |
| |
|
||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||| |
|
|
| T |
6684935 |
gttaggtatagcttgttgaatctttaggtactgcatcagttcttactcttggttatgtataattgttgcataatttatgttcccagctcaactaatgacc |
6684836 |
T |
|
| Q |
413 |
tgtgactatattatagtttatatgtgacaactgcttaagcatgcattatattgtttattttggcaggacaaaaagttgaatactgtaaaagg |
504 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6684835 |
tgtgactatcttatagtttatatgtgaccactgcttaagcatgcattatattgtctattttggcaggacaaaaagttgaatactgtaaaagg |
6684744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 154 - 504
Target Start/End: Complemental strand, 30822069 - 30821727
Alignment:
| Q |
154 |
ggagttgtttctggcatatattcaaaattgtcttctcaatccattcaacatagttatttagatattactagcttacatgtatgatatcagttttgtacaa |
253 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30822069 |
ggagttttttctggcatatattcaaaattgtcttctcaatccattcaacatagttatttggatattactagcttacatgtatgatatcagttttgtacaa |
30821970 |
T |
|
| Q |
254 |
ccaacttttgatttggaatgttagtataacagttggatgctgcccttttgatttagagtgttagtaatagcttcttgaatctttagatactgcatcagtt |
353 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||| ||||| ||||||| |
|
|
| T |
30821969 |
ccaacttttgatttggaatgttagtataacagttggatgctgcccttttgattaagagtgttagtaatagcttgttgaatatttaggtactgaatcagtt |
30821870 |
T |
|
| Q |
354 |
cttactcttggttatgtataattgttgcttaatttatgttcccaactcacctaatgacatgtgactatattatagtttatatgtgacaactgcttaagca |
453 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| |||| ||| |||| |||||||| ||||||||| |||||| || || |||||| ||||| |
|
|
| T |
30821869 |
cttactcttggttatttataattgttgcttaatttctgtt-ccagctcaactaatgacctgtgactatcttatagctt-------accactgctgaagca |
30821778 |
T |
|
| Q |
454 |
tgcattatattgtttattttggcaggacaaaaagttgaatactgtaaaagg |
504 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
30821777 |
tgcattatattgtttattttggcaggacaaaaagttgaataccgtaaaagg |
30821727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 195 - 504
Target Start/End: Complemental strand, 12592731 - 12592422
Alignment:
| Q |
195 |
cattcaacatagttatttagatattactagcttacatgtatgatatcagttttgtacaaccaacttttgatttggaatgttagtataacagttggatgct |
294 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12592731 |
cattcaacatagttatttggatattactagcttacatgtatgttatcagttttgtacaaccaacttttgatttggaatgttagtataacagttggatgct |
12592632 |
T |
|
| Q |
295 |
gcccttttgatttagagtgttagtaatagcttcttgaatctttagatactgcatcagttcttactcttggttatgtataattgttgcttaatttatgttc |
394 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |||||||||||| |||| ||||| ||||| ||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
12592631 |
gcccttttgatttagtttgttagtaatagcttattgaatctttaggtactacatcaattctttctcttggttatgtataattattgcttaatttctgttc |
12592532 |
T |
|
| Q |
395 |
ccaactcacctaatgacatgtgactatattatagtttatatgtgacaactgcttaagcatgcattatattgtttattttggcaggacaaaaagttgaata |
494 |
Q |
| |
|
||| |||| |||||||| ||||||||| |||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
12592531 |
ccagctcaactaatgacctgtgactatcttatagcttatatgtgacctttgcttaagcatgcattgtattgtttattttggcaggacaaaaagttgaata |
12592432 |
T |
|
| Q |
495 |
ctgtaaaagg |
504 |
Q |
| |
|
|||||||||| |
|
|
| T |
12592431 |
ctgtaaaagg |
12592422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 165 - 428
Target Start/End: Complemental strand, 30812796 - 30812533
Alignment:
| Q |
165 |
tggcatatattcaaaattgtcttctcaatccattcaacatagttatttagatattactagcttacatgtatgatatcagttttgtacaaccaacttttga |
264 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
30812796 |
tggcatttattcaaaattgtcttctcagtccattcaacatagttatttggatattactagcttacatgtatgatattagttttgtacaaccaatttttga |
30812697 |
T |
|
| Q |
265 |
tttggaatgttagtataacagttggatgctgcccttttgatttagagtgttagtaatagcttcttgaatctttagatactgcatcagttcttactcttgg |
364 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||||| |||||| ||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
30812696 |
tttgaaatgttagtataacagttggatgttgccctgttgattaagagtgttagtaatagcttgttgaatctttaggtactgaatcagttcttactcttgg |
30812597 |
T |
|
| Q |
365 |
ttatgtataattgttgcttaatttatgttcccaactcacctaatgacatgtgactatattatag |
428 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||| |
|
|
| T |
30812596 |
ttatttataattgttgcttaatttatgttcccagctcaactaatgacatgtgactatcttatag |
30812533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 450 - 504
Target Start/End: Original strand, 17719133 - 17719187
Alignment:
| Q |
450 |
agcatgcattatattgtttattttggcaggacaaaaagttgaatactgtaaaagg |
504 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17719133 |
agcatgcattatattgtttattttggcaggacaaaaagttgaatactgtaaaagg |
17719187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 450 - 504
Target Start/End: Original strand, 14668754 - 14668808
Alignment:
| Q |
450 |
agcatgcattatattgtttattttggcaggacaaaaagttgaatactgtaaaagg |
504 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
14668754 |
agcatgcattatattgtttattttggtaggacaaaaagttgaatattgtaaaagg |
14668808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 176; Significance: 1e-94; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 133 - 422
Target Start/End: Complemental strand, 27810826 - 27810551
Alignment:
| Q |
133 |
tgtgaagtatggattaacatcggagttgtttctggcatatattcaaaattgtcttctcaatccattcaacatagttatttagatattac--tagcttaca |
230 |
Q |
| |
|
|||||||||||||||||| | |||||| |||||||| ||||||||||||||| |||||| |||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
27810826 |
tgtgaagtatggattaacttgggagttttttctggcttatattcaaaattgtattctcagtccattcaacatagttatttggatattactatagcttaca |
27810727 |
T |
|
| Q |
231 |
tgtatgatatcagttttgtacaaccaacttttgatttggaatgttagtataacagttggatgctgcccttttgatttagagtgttagtaatagcttcttg |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
27810726 |
tgtatgatatcagttttgtacaaccaacttttgatttggaatgtta----------------ctgcccttttgatttagagtgttagtaatagcttgttg |
27810643 |
T |
|
| Q |
331 |
aatctttagatactgcatcagttcttactcttggttatgtataattgttgcttaatttatgttcccaactcacctaatgacatgtgactata |
422 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |||| ||||||||||||||||||| |
|
|
| T |
27810642 |
aatctttaggtactgcatcagttcttactcttggttatttataattgttgcttaatttctgttcccatctcaactaatgacatgtgactata |
27810551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 450 - 504
Target Start/End: Complemental strand, 27810551 - 27810497
Alignment:
| Q |
450 |
agcatgcattatattgtttattttggcaggacaaaaagttgaatactgtaaaagg |
504 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27810551 |
agcatgcattatattgtttattttggcaggacaaaaagttgaatactgtaaaagg |
27810497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 450 - 504
Target Start/End: Complemental strand, 18767586 - 18767532
Alignment:
| Q |
450 |
agcatgcattatattgtttattttggcaggacaaaaagttgaatactgtaaaagg |
504 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
18767586 |
agcatgcattatattgtttattttggcaggacaaaaagttcaatactgtaaaagg |
18767532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 450 - 504
Target Start/End: Complemental strand, 19449137 - 19449083
Alignment:
| Q |
450 |
agcatgcattatattgtttattttggcaggacaaaaagttgaatactgtaaaagg |
504 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
19449137 |
agcatgcattatattgtttattttggcaggacaaaaagttgaatattgtaaaagg |
19449083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 450 - 504
Target Start/End: Original strand, 19531939 - 19531993
Alignment:
| Q |
450 |
agcatgcattatattgtttattttggcaggacaaaaagttgaatactgtaaaagg |
504 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
19531939 |
agcatgcattatattgtttattttggcaggacaaaaagttgaatattgtaaaagg |
19531993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 156; Significance: 1e-82; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 81 - 396
Target Start/End: Complemental strand, 26357949 - 26357617
Alignment:
| Q |
81 |
tagaacctattttgctgcttgattttgatctctaaaagcttcatcgtgacattgtgaagtatggattaacatcggagttgtttctggcatatattcaaaa |
180 |
Q |
| |
|
||||||||||||||||||||||| || ||||||| || ||| || | ||||||||||| |||||||||| | |||||||||||||||||||||| ||| |
|
|
| T |
26357949 |
tagaacctattttgctgcttgatctttatctctagaatctttatgataacattgtgaaggatggattaacctgggagttgtttctggcatatatttgaaa |
26357850 |
T |
|
| Q |
181 |
ttgtcttctcaatccattcaacatagttatttagatattactagcttacatgtatgatatcagtttt----------gtacaaccaacttttgatttgga |
270 |
Q |
| |
|
||||||||||| ||||| ||||| ||| |||| |||||||||||||||||||| |||||||||| || |||||||||||||||||||||| |
|
|
| T |
26357849 |
ttgtcttctcagtccatccaacacagtgatttggatattactagcttacatgtttgatatcagtgtttatcagtgttgtacaaccaacttttgatttggt |
26357750 |
T |
|
| Q |
271 |
atgttagtataacagttggatgctgcccttttgatttagagtgttagtaatagcttcttgaatctttagatactgcatcagtt-------cttactcttg |
363 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||||| |||||||||||||||||| |||||||||||| || |||||||||| |||||||||| |
|
|
| T |
26357749 |
atgttagtataacaattggatgctacccttttgatttggagtgttagtaatagcttgttgaatctttaggtattgcatcagttcttagttcttactcttg |
26357650 |
T |
|
| Q |
364 |
gttatgtataattgttgcttaatttatgttccc |
396 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||| |
|
|
| T |
26357649 |
gttatgtataattgttgctcaatttctgttccc |
26357617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 450 - 504
Target Start/End: Original strand, 23615968 - 23616022
Alignment:
| Q |
450 |
agcatgcattatattgtttattttggcaggacaaaaagttgaatactgtaaaagg |
504 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
23615968 |
agcatgcattatattgtttattttggcaggacaaaaagttgaatattgtaaaagg |
23616022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 450 - 504
Target Start/End: Original strand, 23847364 - 23847418
Alignment:
| Q |
450 |
agcatgcattatattgtttattttggcaggacaaaaagttgaatactgtaaaagg |
504 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
23847364 |
agcatgcattatattgtttattttggcaggacaaaaagttgaatattgtaaaagg |
23847418 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 450 - 504
Target Start/End: Complemental strand, 17038238 - 17038184
Alignment:
| Q |
450 |
agcatgcattatattgtttattttggcaggacaaaaagttgaatactgtaaaagg |
504 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
17038238 |
agcatgcattatattgtttattttggcaggccaaatagttgaatactgtaaaagg |
17038184 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 344 - 504
Target Start/End: Original strand, 2942515 - 2942675
Alignment:
| Q |
344 |
tgcatcagttcttactcttggttatgtataattgttgcttaatttatgttcccaactcacctaatgacatgtgactatattatagtttatatgtgacaac |
443 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||||||||||||| |||||||| |||| |||||||| ||||||||| ||||| ||||||||||| || |
|
|
| T |
2942515 |
tgcatcagtgcttactcttggttatgtatgattgttgcttaatttctgttcccagctcaactaatgacctgtgactatcttataacttatatgtgaccac |
2942614 |
T |
|
| Q |
444 |
tgcttaagcatgcattatattgtttattttggcaggacaaaaagttgaatactgtaaaagg |
504 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
2942615 |
tgcttaaacatgcattatattgtttattttggcaggataaaaagttgaattatgtaaaagg |
2942675 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 9e-28; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 413 - 496
Target Start/End: Complemental strand, 19747291 - 19747208
Alignment:
| Q |
413 |
tgtgactatattatagtttatatgtgacaactgcttaagcatgcattatattgtttattttggcaggacaaaaagttgaatact |
496 |
Q |
| |
|
||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
19747291 |
tgtgactatcttgtagtttatatgtgaccactgcttaagcatgcattatattgtttattttggctgaacaaaaagttgaatact |
19747208 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 415 - 504
Target Start/End: Complemental strand, 10022758 - 10022669
Alignment:
| Q |
415 |
tgactatattatagtttatatgtgacaactgcttaagcatgcattatattgtttattttggcaggacaaaaagttgaatactgtaaaagg |
504 |
Q |
| |
|
||||||| ||||| |||||||||||| |||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
10022758 |
tgactatcttataatttatatgtgaccactgattaagcatgcattatattgtttattttggtaaaacaaaaagttgaatactgtaaaagg |
10022669 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 450 - 504
Target Start/End: Original strand, 9241894 - 9241948
Alignment:
| Q |
450 |
agcatgcattatattgtttattttggcaggacaaaaagttgaatactgtaaaagg |
504 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9241894 |
agcatgcattatattgtttattttggcaggacaaaaagttgaatactgtaaaagg |
9241948 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1808 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: scaffold1808
Description:
Target: scaffold1808; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 410 - 504
Target Start/End: Complemental strand, 1127 - 1034
Alignment:
| Q |
410 |
acatgtgactatattatagtttatatgtgacaactgcttaagcatgcattatattgtttattttggcaggacaaaaagttgaatactgtaaaagg |
504 |
Q |
| |
|
|||||||| ||| |||||||||||||||||| ||| |||||||||||||||||||| |||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
1127 |
acatgtgattatgttatagtttatatgtgaccactacttaagcatgcattatattg-ttattttggcagaacaaaaagtttaatactgtaaaagg |
1034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 415 - 504
Target Start/End: Complemental strand, 15514373 - 15514284
Alignment:
| Q |
415 |
tgactatattatagtttatatgtgacaactgcttaagcatgcattatattgtttattttggcaggacaaaaagttgaatactgtaaaagg |
504 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||| ||| ||||||||||||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
15514373 |
tgactatcttatagtttatatgtgattactgcttaagtatgtattatattgtttattttggcaagacaaaaagttgaatactataaaagg |
15514284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 413 - 504
Target Start/End: Complemental strand, 30267655 - 30267564
Alignment:
| Q |
413 |
tgtgactatattatagtttatatgtgacaactgcttaagcatgcattatattgtttattttggcaggacaaaaagttgaatactgtaaaagg |
504 |
Q |
| |
|
||||||||| |||||||||||||||||| || | ||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
30267655 |
tgtgactatgttatagtttatatgtgaccaccacataagcatgcattatattgtttgttttggcagaacaaaaagttgaatactataaaagg |
30267564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 423 - 504
Target Start/End: Complemental strand, 44921788 - 44921707
Alignment:
| Q |
423 |
ttatagtttatatgtgacaactgcttaagcatgcattatattgtttattttggcaggacaaaaagttgaatactgtaaaagg |
504 |
Q |
| |
|
|||||||||||||||| | | | |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
44921788 |
ttatagtttatatgtgcccaatacttaagaatgcattatattgtttattttggcataacaaaaagttgaatactgtaaaagg |
44921707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 4e-24; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 415 - 504
Target Start/End: Original strand, 47065484 - 47065573
Alignment:
| Q |
415 |
tgactatattatagtttatatgtgacaactgcttaagcatgcattatattgtttattttggcaggacaaaaagttgaatactgtaaaagg |
504 |
Q |
| |
|
||||||| |||||||||||||||||| || | ||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
47065484 |
tgactatgttatagtttatatgtgaccaccacataagcatgcattatattgtttgttttggcagaacaaaaagttgaatactataaaagg |
47065573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 413 - 504
Target Start/End: Complemental strand, 53301005 - 53300914
Alignment:
| Q |
413 |
tgtgactatattatagtttatatgtgacaactgcttaagcatgcattatattgtttattttggcaggacaaaaagttgaatactgtaaaagg |
504 |
Q |
| |
|
||||||||| |||||||||||||||||| || | ||||||||| ||||||||||| ||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
53301005 |
tgtgactatgttatagtttatatgtgaccaccacataagcatgcgttatattgtttgttttggcagaacaaaaagttgaatactataaaagg |
53300914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 450 - 504
Target Start/End: Original strand, 1684368 - 1684422
Alignment:
| Q |
450 |
agcatgcattatattgtttattttggcaggacaaaaagttgaatactgtaaaagg |
504 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
1684368 |
agcatgcattatattgtttattttggcaggacaaaaagttgaatactataaaagg |
1684422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 450 - 504
Target Start/End: Original strand, 8142825 - 8142880
Alignment:
| Q |
450 |
agcatgcattatattgtttattttggcagga-caaaaagttgaatactgtaaaagg |
504 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
8142825 |
agcatgcattatattgtttattttggcaggataaaaaagttgaataccgtaaaagg |
8142880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: scaffold0105
Description:
Target: scaffold0105; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 413 - 504
Target Start/End: Original strand, 67 - 158
Alignment:
| Q |
413 |
tgtgactatattatagtttatatgtgacaactgcttaagcatgcattatattgtttattttggcaggacaaaaagttgaatactgtaaaagg |
504 |
Q |
| |
|
||||||||| |||||||||||||||||| || | ||||||||||||||||||||| ||||| ||| ||||||||||||||||| ||||||| |
|
|
| T |
67 |
tgtgactatgttatagtttatatgtgaccaccacataagcatgcattatattgtttgttttgccagaacaaaaagttgaatactataaaagg |
158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0069 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0069
Description:
Target: scaffold0069; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 450 - 504
Target Start/End: Original strand, 40108 - 40162
Alignment:
| Q |
450 |
agcatgcattatattgtttattttggcaggacaaaaagttgaatactgtaaaagg |
504 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
40108 |
agcatgcattatattgtttattttggcaggacaaaaagttgaatattgtaaaagg |
40162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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