View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1596_low_121 (Length: 231)

Name: NF1596_low_121
Description: NF1596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1596_low_121
NF1596_low_121
[»] chr4 (3 HSPs)
chr4 (62-216)||(53465286-53465440)
chr4 (80-149)||(687098-687167)
chr4 (80-149)||(704465-704534)
[»] chr2 (1 HSPs)
chr2 (65-147)||(45217885-45217967)
[»] chr1 (1 HSPs)
chr1 (86-147)||(2867145-2867206)
[»] chr5 (1 HSPs)
chr5 (77-141)||(33032576-33032640)


Alignment Details
Target: chr4 (Bit Score: 155; Significance: 2e-82; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 62 - 216
Target Start/End: Original strand, 53465286 - 53465440
Alignment:
Q  62 atggagcaaaggatattctcatgcaactattgtcaaagaaagttttatagctctcaagctttgggaggacaccaaaatgctcacaagcttgaaaggacac 161  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53465286 atggagcaaaggatattctcatgcaactattgtcaaagaaagttttatagctctcaagctttgggaggacaccaaaatgctcacaagcttgaaaggacac 53465385  T
Q  162 ttgcaaagaagagtagggagatgagttcagccatgcaatcttcttatgctgaatt 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53465386 ttgcaaagaagagtagggagatgagttcagccatgcaatcttcttatgctgaatt 53465440  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 80 - 149
Target Start/End: Complemental strand, 687167 - 687098
Alignment:
Q  80 tcatgcaactattgtcaaagaaagttttatagctctcaagctttgggaggacaccaaaatgctcacaagc 149  Q
    ||||||||||| || ||||||||||||||||| ||||||||  | ||||||||||||||||| |||||||    
T  687167 tcatgcaactactgccaaagaaagttttatagttctcaagcacttggaggacaccaaaatgcacacaagc 687098  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 80 - 149
Target Start/End: Complemental strand, 704534 - 704465
Alignment:
Q  80 tcatgcaactattgtcaaagaaagttttatagctctcaagctttgggaggacaccaaaatgctcacaagc 149  Q
    ||||||||||| || ||||||||||||||||| ||||||||  | ||||||||||||||||| |||||||    
T  704534 tcatgcaactactgccaaagaaagttttatagttctcaagcacttggaggacaccaaaatgcacacaagc 704465  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 65 - 147
Target Start/End: Complemental strand, 45217967 - 45217885
Alignment:
Q  65 gagcaaaggatattctcatgcaactattgtcaaagaaagttttatagctctcaagctttgggaggacaccaaaatgctcacaa 147  Q
    |||| |||||| ||||||||||||||||| ||||||||||||||||| || || ||  | || |||||||||||||| |||||    
T  45217967 gagccaaggattttctcatgcaactattgccaaagaaagttttatagttcacaggcacttggtggacaccaaaatgcacacaa 45217885  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 147
Target Start/End: Complemental strand, 2867206 - 2867145
Alignment:
Q  86 aactattgtcaaagaaagttttatagctctcaagctttgggaggacaccaaaatgctcacaa 147  Q
    ||||||||||| ||||| || |||||||| ||||| || || ||||||||||||||||||||    
T  2867206 aactattgtcatagaaaattctatagctcacaagcattaggtggacaccaaaatgctcacaa 2867145  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 141
Target Start/End: Complemental strand, 33032640 - 33032576
Alignment:
Q  77 ttctcatgcaactattgtcaaagaaagttttatagctctcaagctttgggaggacaccaaaatgc 141  Q
    ||||||||||| || ||||| ||||||||||  || ||||||||| | || ||||||||||||||    
T  33032640 ttctcatgcaattactgtcagagaaagtttttcagttctcaagctcttggtggacaccaaaatgc 33032576  T

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