View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1596_low_128 (Length: 212)
Name: NF1596_low_128
Description: NF1596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1596_low_128 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 46711994 - 46712202
Alignment:
| Q |
1 |
taacaaacatgcacttaatggactaagatttaaggggattatttgaaagtgtaccttgttgctgaagaaaatgcgatccttttgatatttttgagaaggg |
100 |
Q |
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| T |
46711994 |
taacaaacatgcacttaatgtactaagatttaaggggattgtttaata---taccttgttgctgaagaaaatgcgatccttttgatatttttgagaaggg |
46712090 |
T |
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| Q |
101 |
tatacccaagagttgcatataaagtgaataacaccttggccaggaacattatgaagtttcaagctttttaggtagaactcactgtgatgattattcttaa |
200 |
Q |
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| T |
46712091 |
taaacccaagagttgcatgtaaagtgaataacaccttggccaggaacattttgaagtttcaagctttttaggtagaactcactgtgatgattattcttaa |
46712190 |
T |
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| Q |
201 |
ttagaaatgctc |
212 |
Q |
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| T |
46712191 |
ttaggaatgctc |
46712202 |
T |
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Target: chr1 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 52 - 196
Target Start/End: Complemental strand, 36923352 - 36923208
Alignment:
| Q |
52 |
taccttgttgctgaagaaaatgcgatccttttgatatttttgagaagggtatacccaagagttgcatataaagtgaataacaccttggccaggaacatta |
151 |
Q |
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| T |
36923352 |
taccttgttggagaagaaaatgcgatcttttacgtagtttttagcaggatatacccaagagttgcagacaaagtggataacatcttgaccaggaacgcct |
36923253 |
T |
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| Q |
152 |
tgaagtttcaagctttttaggtagaactcactgtgatgattattc |
196 |
Q |
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| T |
36923252 |
ttaagtgtcaagcttttgaggtagaactcattgtcatgattattc |
36923208 |
T |
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