View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1596_low_13 (Length: 519)
Name: NF1596_low_13
Description: NF1596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1596_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 484; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 16 - 503
Target Start/End: Complemental strand, 35351564 - 35351077
Alignment:
| Q |
16 |
atgcacatgtacaatgataactatgccactaagaataatatgttgctatttggttttgctgaaatagtcacatcctatataaaaataaaaagtttttcct |
115 |
Q |
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| T |
35351564 |
atgcacatgcacaatgataactatgccactaagaataatatgttgctatttggttttgctgaaatagtcacatcctatataaaaataaaaagtttttcct |
35351465 |
T |
|
| Q |
116 |
taaacatcacttctgatattcaatttaagcaaataattgaatttacaaatctgattttctcacactacctttctctctcatcacttttatacctcctcac |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35351464 |
taaacatcacttctgatattcaatttaagcaaataattgaatttacaaatctgattttctcacactacctttctctctcatcacttttatacctcctcac |
35351365 |
T |
|
| Q |
216 |
cctttgtgtctgtttccttttcctattacatcatctaccacttctctcactttctttcctctaactctttctttcgtgcattacccacaacccatatcca |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35351364 |
cctttgtgtctgtttccttttcctattacatcatctaccacttctctcactttctttcctctaactctttctttcgtgcattacccacaacccatatcca |
35351265 |
T |
|
| Q |
316 |
acttaagatgtcattattctttaatttatactcccttcacaacatcatttgggacctggaatcttaaattcttcaagttgtaaaagcagtttcatcaaat |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35351264 |
acttaagatgtcattattctttaatttatactcccttcacaacatcatttgggacctggaatcttaaattcttcaagttgtaaaagcagtttcatcaaat |
35351165 |
T |
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| Q |
416 |
gagttgtatcacaccaaaatccaaatgagaaataattctttaacaaatcattttagacaacttttgcaacaactttctatgtggttaa |
503 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35351164 |
gagttgtatcacaccaaaatccaaatgagaaataattctttaacaaatcattttagacaacttttgcaacaactttctatgtggttaa |
35351077 |
T |
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