View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1596_low_130 (Length: 206)

Name: NF1596_low_130
Description: NF1596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1596_low_130
NF1596_low_130
[»] chr2 (3 HSPs)
chr2 (118-189)||(45038798-45038871)
chr2 (113-189)||(45064421-45064498)
chr2 (22-71)||(45064283-45064332)
[»] chr8 (1 HSPs)
chr8 (104-189)||(29375420-29375507)


Alignment Details
Target: chr2 (Bit Score: 59; Significance: 3e-25; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 118 - 189
Target Start/End: Original strand, 45038798 - 45038871
Alignment:
Q  118 atatgatgatattttatgtata--tagatcattgtatgaactcatccactatctataaaaactaccacttgatt 189  Q
    ||||||||||||||||||||||  ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  45038798 atatgatgatattttatgtatatatagatcattgtatgaactcctccactatctataaaaactaccacttgatt 45038871  T

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Target: chr2; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 113 - 189
Target Start/End: Original strand, 45064421 - 45064498
Alignment:
Q  113 ttaatatatgatgatattttatgtatata--gatcattgtatgaactcatccactatctataaaaactaccacttgatt 189  Q
    |||||||||||||||| ||||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||    
T  45064421 ttaatatatgatgatactttatgtatatatagatcattgtatgaactcatc-actatctataaaaactaccacttgatt 45064498  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 22 - 71
Target Start/End: Original strand, 45064283 - 45064332
Alignment:
Q  22 caattggtcttatgattcggtaatagcgtaatacaataacaagtctttta 71  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  45064283 caattggtcttatgattcggtaatagtgtaatacaataacaagcctttta 45064332  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 104 - 189
Target Start/End: Original strand, 29375420 - 29375507
Alignment:
Q  104 tattcttacttaatatatgatgatattttatg--tatatagatcattgtatgaactcatccactatctataaaaactaccacttgatt 189  Q
    |||||||| || | || |||||||||||||||  ||||||||| ||||||||||||| ||| ||| |||||||||||  |||||||||    
T  29375420 tattcttaattgaaatgtgatgatattttatgcatatatagataattgtatgaactcctcctctaactataaaaactgacacttgatt 29375507  T

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