View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1596_low_134 (Length: 202)
Name: NF1596_low_134
Description: NF1596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1596_low_134 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 133; Significance: 2e-69; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 23 - 188
Target Start/End: Original strand, 28437125 - 28437282
Alignment:
| Q |
23 |
tgcatcaaatcatatcatcattcaattactcctatcttccctttccataaagaaaaaccatctttttctctttttctctctgaaaattcattcaatggtg |
122 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
28437125 |
tgcatcaaatcatatcatcattcaactactcctatcttccctttccataaagaaaaaccatctt--------tttctctctgaaaattcattcaatggtg |
28437216 |
T |
|
| Q |
123 |
gcaccaaatcacaaaaacacacaagatcatgaaaaccaacaaggttcttcatcagaaaccaagata |
188 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28437217 |
gcaccaaatcacaaaaacacacaagatcatgaaaaccaacaaggttcttcatcagaaaccaagata |
28437282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University