View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1596_low_17 (Length: 490)
Name: NF1596_low_17
Description: NF1596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1596_low_17 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 16 - 466
Target Start/End: Complemental strand, 34747367 - 34746917
Alignment:
| Q |
16 |
aaatatttgtttatcgcatgtcacgtcaaattgaagacaaattgtacacctaaaaaattgaagacatgatgaacttagctttggtggagggaataaaagg |
115 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34747367 |
aaatatttgtttatcacatgtcacgtcaaattgaagacaaattgtacacctaaaaaattgaagacatgatgaacttagctttggtggagggaataaaagg |
34747268 |
T |
|
| Q |
116 |
gcaacactttgtattcgcagcatatgaatggaatttgaaaaggagattaaagagtgagttgacaataactactattgcaaatagtgaattgatgtagtta |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
34747267 |
gcaacactttgtattcgcagcatatgaatggaatttgaaaaggagattaaagagtgagttgacaataactactattgcaaataatgaattgatgtagtta |
34747168 |
T |
|
| Q |
216 |
gttattgtgaaatacaaatataaaagaaagtacaaataattttttgattactatgtgctatttttgttgatttcagtcctccaattttgaaacaatggtg |
315 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34747167 |
gttattgtcaaatacaaatataaaagaaagtacaaataattttttgattactatgtgctattgttgttgatttcagtcctccaattttgaaacaatggtg |
34747068 |
T |
|
| Q |
316 |
gagattgttaagtagtaatttggttaaagtttaatgtgattgaccaatctaattcaatgataaatgcaatgtactagtaaaattggatcaaatatgtata |
415 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34747067 |
gagattgttaagtagtcatttggttaaagtttaatgtgattgaccaatctaattcaatgataaatgcaatgtactagtaaaattggatcaaatatgtata |
34746968 |
T |
|
| Q |
416 |
ccggtaaaagtgnnnnnnnatttgcataaacaaaatcaactcattccatta |
466 |
Q |
| |
|
|||||||||||| |||| |||||| |||||||||||||| ||||| |
|
|
| T |
34746967 |
ccggtaaaagtgtttttttatttacataaataaaatcaactcatttcatta |
34746917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University