View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1596_low_19 (Length: 480)

Name: NF1596_low_19
Description: NF1596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1596_low_19
NF1596_low_19
[»] chr4 (46 HSPs)
chr4 (180-469)||(22061839-22062127)
chr4 (21-77)||(2117297-2117353)
chr4 (21-77)||(20590169-20590225)
chr4 (21-77)||(24947519-24947575)
chr4 (21-77)||(43023126-43023182)
chr4 (25-77)||(3758494-3758546)
chr4 (21-77)||(8987672-8987728)
chr4 (21-77)||(8988304-8988360)
chr4 (21-77)||(37351204-37351260)
chr4 (21-77)||(39714310-39714366)
chr4 (21-77)||(43022610-43022666)
chr4 (21-77)||(47556192-47556248)
chr4 (25-77)||(50118836-50118888)
chr4 (21-67)||(16904820-16904866)
chr4 (21-74)||(29713156-29713209)
chr4 (21-77)||(9888162-9888218)
chr4 (25-77)||(24548529-24548581)
chr4 (21-77)||(24944803-24944859)
chr4 (21-77)||(37350572-37350628)
chr4 (21-77)||(46105372-46105428)
chr4 (21-77)||(52801465-52801521)
chr4 (31-77)||(42350977-42351023)
chr4 (31-77)||(48809188-48809234)
chr4 (31-77)||(49750482-49750528)
chr4 (33-75)||(54094650-54094692)
chr4 (86-134)||(22062166-22062214)
chr4 (33-77)||(39714265-39714309)
chr4 (31-74)||(23633165-23633208)
chr4 (26-77)||(49357710-49357761)
chr4 (31-77)||(4875621-4875667)
chr4 (31-77)||(40682318-40682364)
chr4 (33-79)||(40682496-40682542)
chr4 (33-75)||(54093265-54093307)
chr4 (33-75)||(54095039-54095081)
chr4 (29-77)||(39405482-39405530)
chr4 (86-134)||(39429877-39429925)
chr4 (31-77)||(9061378-9061424)
chr4 (35-77)||(22454517-22454559)
chr4 (33-67)||(49750662-49750696)
chr4 (36-77)||(2527589-2527630)
chr4 (33-74)||(23632997-23633038)
chr4 (36-77)||(46420628-46420669)
chr4 (24-72)||(22454356-22454404)
chr4 (86-134)||(23424531-23424579)
chr4 (33-77)||(54094355-54094399)
chr4 (33-77)||(54095145-54095189)
[»] chr7 (29 HSPs)
chr7 (321-468)||(32904110-32904257)
chr7 (25-77)||(7855849-7855901)
chr7 (21-77)||(24683173-24683229)
chr7 (21-77)||(33637537-33637593)
chr7 (25-77)||(34872923-34872975)
chr7 (21-74)||(29468549-29468602)
chr7 (21-77)||(4849554-4849610)
chr7 (21-77)||(9150746-9150802)
chr7 (21-77)||(17171467-17171523)
chr7 (21-77)||(24683903-24683959)
chr7 (25-77)||(35156257-35156309)
chr7 (21-77)||(39648737-39648793)
chr7 (25-77)||(44805689-44805741)
chr7 (31-77)||(20077927-20077973)
chr7 (31-77)||(24396632-24396678)
chr7 (21-77)||(27733833-27733889)
chr7 (21-77)||(49144914-49144970)
chr7 (26-77)||(40107836-40107887)
chr7 (21-77)||(31897578-31897634)
chr7 (31-77)||(38029494-38029540)
chr7 (31-77)||(39704063-39704109)
chr7 (31-77)||(40107607-40107653)
chr7 (36-77)||(20077750-20077791)
chr7 (33-77)||(32201428-32201472)
chr7 (31-77)||(728874-728920)
chr7 (33-67)||(12409536-12409570)
chr7 (31-77)||(20077572-20077618)
chr7 (31-77)||(36158596-36158642)
chr7 (86-134)||(5004248-5004296)
[»] chr8 (24 HSPs)
chr8 (21-77)||(4465234-4465290)
chr8 (21-77)||(12761340-12761396)
chr8 (21-77)||(41532596-41532652)
chr8 (21-77)||(1944292-1944348)
chr8 (21-77)||(7390420-7390476)
chr8 (21-77)||(8762116-8762172)
chr8 (21-77)||(25834880-25834936)
chr8 (21-77)||(25835512-25835568)
chr8 (21-77)||(32845679-32845735)
chr8 (21-77)||(1943549-1943605)
chr8 (21-77)||(8162024-8162080)
chr8 (21-77)||(8761484-8761540)
chr8 (25-77)||(9473344-9473396)
chr8 (21-77)||(32844935-32844991)
chr8 (25-77)||(36777700-36777752)
chr8 (21-77)||(41157752-41157808)
chr8 (21-77)||(44381549-44381605)
chr8 (21-67)||(8161291-8161337)
chr8 (31-77)||(34893215-34893261)
chr8 (25-77)||(32846316-32846368)
chr8 (31-77)||(24254931-24254977)
chr8 (31-77)||(27853954-27854000)
chr8 (21-77)||(25619540-25619596)
chr8 (86-134)||(42346045-42346093)
[»] chr5 (37 HSPs)
chr5 (21-77)||(752952-753008)
chr5 (21-77)||(26601434-26601490)
chr5 (25-77)||(3087300-3087352)
chr5 (21-77)||(34726142-34726198)
chr5 (25-77)||(36885664-36885716)
chr5 (25-77)||(42976165-42976217)
chr5 (28-77)||(17637572-17637621)
chr5 (21-77)||(753695-753751)
chr5 (21-77)||(2181950-2182006)
chr5 (21-77)||(6304689-6304745)
chr5 (21-77)||(30180530-30180586)
chr5 (21-73)||(33705528-33705580)
chr5 (21-77)||(34718031-34718087)
chr5 (21-77)||(41691715-41691771)
chr5 (25-77)||(42976787-42976839)
chr5 (21-77)||(43137157-43137213)
chr5 (21-77)||(43137789-43137845)
chr5 (21-63)||(25696318-25696360)
chr5 (33-77)||(42691999-42692043)
chr5 (21-60)||(12419346-12419385)
chr5 (31-77)||(3891169-3891215)
chr5 (31-77)||(25480407-25480453)
chr5 (31-77)||(25480752-25480798)
chr5 (31-77)||(39914424-39914470)
chr5 (31-77)||(42691820-42691866)
chr5 (86-134)||(4606948-4606996)
chr5 (31-67)||(18241544-18241580)
chr5 (33-77)||(18241727-18241771)
chr5 (33-77)||(19121651-19121695)
chr5 (38-77)||(3890942-3890981)
chr5 (31-74)||(41290557-41290600)
chr5 (31-77)||(19121758-19121804)
chr5 (35-77)||(35392790-35392832)
chr5 (86-127)||(4821219-4821260)
chr5 (36-77)||(5398856-5398897)
chr5 (86-134)||(1969839-1969887)
chr5 (33-77)||(25480575-25480619)
[»] chr1 (26 HSPs)
chr1 (21-77)||(5427419-5427475)
chr1 (21-77)||(19321189-19321245)
chr1 (21-77)||(28572249-28572305)
chr1 (21-77)||(52311285-52311341)
chr1 (21-77)||(1827551-1827607)
chr1 (21-77)||(16301389-16301445)
chr1 (21-77)||(47136965-47137021)
chr1 (21-77)||(50562505-50562561)
chr1 (21-74)||(22198138-22198191)
chr1 (21-74)||(33074889-33074942)
chr1 (21-77)||(4892541-4892597)
chr1 (21-77)||(28571506-28571562)
chr1 (21-77)||(29185890-29185946)
chr1 (21-77)||(33362144-33362200)
chr1 (25-77)||(38895920-38895972)
chr1 (25-77)||(46624251-46624303)
chr1 (31-77)||(28946791-28946837)
chr1 (31-77)||(28947144-28947190)
chr1 (31-77)||(50289965-50290011)
chr1 (86-134)||(50428086-50428134)
chr1 (31-77)||(45914202-45914248)
chr1 (33-77)||(28946965-28947009)
chr1 (33-67)||(21008076-21008110)
chr1 (31-77)||(39268437-39268483)
chr1 (37-77)||(39268720-39268760)
chr1 (33-77)||(50562746-50562790)
[»] scaffold2127 (1 HSPs)
scaffold2127 (21-77)||(807-863)
[»] chr6 (14 HSPs)
chr6 (21-77)||(33320315-33320371)
chr6 (21-74)||(4896728-4896781)
chr6 (21-77)||(1220961-1221017)
chr6 (21-77)||(21054950-21055006)
chr6 (21-77)||(24446368-24446424)
chr6 (21-77)||(35159293-35159349)
chr6 (21-77)||(4109160-4109216)
chr6 (31-77)||(19989470-19989516)
chr6 (36-77)||(33007571-33007612)
chr6 (33-77)||(19989294-19989338)
chr6 (33-77)||(35159350-35159394)
chr6 (31-77)||(19989115-19989161)
chr6 (37-77)||(14366077-14366117)
chr6 (37-77)||(14366378-14366418)
[»] chr2 (17 HSPs)
chr2 (21-77)||(6931235-6931291)
chr2 (21-77)||(9543405-9543461)
chr2 (21-77)||(18091483-18091539)
chr2 (25-77)||(19485065-19485117)
chr2 (25-77)||(19487380-19487432)
chr2 (25-77)||(42781786-42781838)
chr2 (21-68)||(28609051-28609098)
chr2 (21-77)||(1513642-1513698)
chr2 (21-77)||(4290438-4290494)
chr2 (21-77)||(32676416-32676472)
chr2 (31-77)||(25236494-25236540)
chr2 (25-77)||(10875286-10875338)
chr2 (33-77)||(25883087-25883131)
chr2 (31-67)||(37995237-37995273)
chr2 (31-65)||(10128748-10128782)
chr2 (86-134)||(20991959-20992007)
chr2 (33-77)||(25883244-25883288)
[»] chr3 (17 HSPs)
chr3 (25-76)||(29529630-29529681)
chr3 (25-77)||(8526944-8526996)
chr3 (25-77)||(26101548-26101600)
chr3 (21-67)||(55293554-55293600)
chr3 (25-77)||(19361504-19361556)
chr3 (31-77)||(47757043-47757089)
chr3 (25-66)||(19368221-19368262)
chr3 (33-77)||(11585850-11585894)
chr3 (25-77)||(35856004-35856056)
chr3 (31-77)||(13495704-13495750)
chr3 (31-77)||(8235046-8235092)
chr3 (28-77)||(13495528-13495577)
chr3 (36-77)||(51657131-51657172)
chr3 (37-77)||(9770650-9770690)
chr3 (37-77)||(11583448-11583488)
chr3 (33-77)||(11586009-11586053)
chr3 (86-134)||(43768699-43768747)
[»] scaffold0381 (1 HSPs)
scaffold0381 (21-77)||(10326-10382)
[»] scaffold0079 (1 HSPs)
scaffold0079 (21-77)||(9477-9533)
[»] scaffold0057 (1 HSPs)
scaffold0057 (21-77)||(18170-18226)
[»] scaffold0032 (1 HSPs)
scaffold0032 (24-74)||(3721-3771)
[»] scaffold0009 (1 HSPs)
scaffold0009 (21-72)||(232414-232465)
[»] scaffold1155 (2 HSPs)
scaffold1155 (31-77)||(260-306)
scaffold1155 (33-67)||(443-477)
[»] scaffold0345 (2 HSPs)
scaffold0345 (31-77)||(9911-9957)
scaffold0345 (33-67)||(9740-9774)
[»] scaffold0115 (2 HSPs)
scaffold0115 (21-67)||(3847-3893)
scaffold0115 (21-67)||(11587-11633)
[»] scaffold0105 (2 HSPs)
scaffold0105 (31-77)||(29023-29069)
scaffold0105 (33-67)||(29206-29240)
[»] scaffold0642 (1 HSPs)
scaffold0642 (31-76)||(1-46)
[»] scaffold0484 (1 HSPs)
scaffold0484 (25-77)||(8934-8986)
[»] scaffold0044 (2 HSPs)
scaffold0044 (31-67)||(87697-87733)
scaffold0044 (33-77)||(87508-87552)
[»] scaffold0210 (1 HSPs)
scaffold0210 (35-77)||(17516-17558)


Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 46)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 180 - 469
Target Start/End: Complemental strand, 22062127 - 22061839
Alignment:
Q  180 cagatcttgatttattttttcattggatgaaatttttgtccatcgccggtgtaaattaaatatgaccatttctcaatctaccccatgtacctcaaacatg 279  Q
    ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  22062127 cagatcttgattt-ttatttcattggatgaaatttttgtccatcgccggtgtaaattaaatatgaccatttctcaatctaccccatgtacctcaatcatg 22062029  T
Q  280 tgaaaaatacactaccatgaatgtgaatcgctgtgttatataagcctctcatggatgcttctttcaatgcttttaattcttcaaattattacattatttt 379  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22062028 tgaaaaatacactaccatgaatgttaatcgctgtgttatataagcctctcatggatgcttctttcaatgcttttaattcttcaaattattacattatttt 22061929  T
Q  380 ggctccaccgaaattcagtttttcagttaggttcttttctgctgaatcctcaagtggcgatgacaataatgaagacgacagtgatgatgt 469  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  22061928 ggctccaccgaaattcagtttttcagttaggttcttttctgctgaatcctcaagtggtgatgacaataatgaagacgacagtgatgatgt 22061839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 2117297 - 2117353
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  2117297 taagaaataaaataggttaagtatagcaagacgggttaacatttataagtaagagat 2117353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 20590169 - 20590225
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  20590169 taagaaataaaataggttaagtatagcaagacgggttaacatttataagtaagagat 20590225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 24947575 - 24947519
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  24947575 taagaaataaaataggttaagtatagcaagacgggttaacatttataagtaagagat 24947519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 43023126 - 43023182
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  43023126 taagaaataaaataggttaagtatagcaagacgggttaacatttataagtaagagat 43023182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 3758494 - 3758546
Alignment:
Q  25 aaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  3758494 aaataaaataggttaagtatagcaagacgggttaacatttataagtaagagat 3758546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 8987672 - 8987728
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  8987672 taagaaataaaataggttaagtatagcaagacgggttaacatttataaataagagat 8987728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 8988304 - 8988360
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||    
T  8988304 taagaaataaaataggttaagtatggcaagacgggttaacatttataagtaagagat 8988360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 37351204 - 37351260
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||    
T  37351204 taagaaataaaataggttaagtatggcaagacgggttaacatttataagtaagagat 37351260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 39714366 - 39714310
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  39714366 taagaaataaaataggttaagtatagcaagacggattaacatttataagtaagagat 39714310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 43022610 - 43022666
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  43022610 taagaaataaaataggttaagtatagcaaggcgggttaacatttataagtaagagat 43022666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 47556248 - 47556192
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  47556248 taagaaataaaataggttaagtatagaaagacgggttaacatttataagtaagagat 47556192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 50118888 - 50118836
Alignment:
Q  25 aaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  50118888 aaataaaataggttaagtatagcaagacgggttaacatttataagtaagagat 50118836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 21 - 67
Target Start/End: Original strand, 16904820 - 16904866
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaacatttata 67  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  16904820 taagaaataaaataggttaagtatagcaagacgggttaacatttata 16904866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 29713156 - 29713209
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaacatttatatgtaaga 74  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  29713156 taagaaataaaataggttaagtattgcaagacgggttaacatttataagtaaga 29713209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 9888218 - 9888162
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||    
T  9888218 taagaaataaaataggctaagtatagcaagacgggttaacatttataaataagagat 9888162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 24548529 - 24548581
Alignment:
Q  25 aaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  24548529 aaataaaataggttaagtacagcaagacgggttaacatttataagtaagagat 24548581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 24944859 - 24944803
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||    
T  24944859 taagaaataaaataggttaagtatagcaagacgagttaacatttataagtgagagat 24944803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 37350572 - 37350628
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||    
T  37350572 taagaaataaaataggctaagtatagcaagacgggttaacatttataaataagagat 37350628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 46105372 - 46105428
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||    
T  46105372 taagaaataaaataggttaagtatagcaagacaggttaacatttataagtaatagat 46105428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 52801465 - 52801521
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||||||||||||||||||||| || |||||||||||| |||||||||    
T  52801465 taagaaataaaataggttaagtatagcaagagggattaacatttataagtaagagat 52801521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 31 - 77
Target Start/End: Complemental strand, 42351023 - 42350977
Alignment:
Q  31 aataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||    
T  42351023 aataggttaagtatagcaagacgggttaacatttataagtaagagat 42350977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 31 - 77
Target Start/End: Complemental strand, 48809234 - 48809188
Alignment:
Q  31 aataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||||    
T  48809234 aataggttaagtatatcaagacgggttaacatttataagtaagagat 48809188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 31 - 77
Target Start/End: Original strand, 49750482 - 49750528
Alignment:
Q  31 aataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||    
T  49750482 aataggttaagtatagcaagacgggttatcatttataagtaagagat 49750528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 33 - 75
Target Start/End: Original strand, 54094650 - 54094692
Alignment:
Q  33 taggttaagtatagcaagacgggttaacatttatatgtaagag 75  Q
    ||||||||||||||||||||||||||||||||||| |||||||    
T  54094650 taggttaagtatagcaagacgggttaacatttataagtaagag 54094692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 86 - 134
Target Start/End: Complemental strand, 22062214 - 22062166
Alignment:
Q  86 attaaattaaagatgagtatgaattttatcatggattgtctacatcata 134  Q
    |||| |||||||||||||||||||||||||||||| || ||||||||||    
T  22062214 attagattaaagatgagtatgaattttatcatggactgcctacatcata 22062166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 33 - 77
Target Start/End: Complemental strand, 39714309 - 39714265
Alignment:
Q  33 taggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    |||||||||||||||||||||| |||||||||||| |||||||||    
T  39714309 taggttaagtatagcaagacggattaacatttataagtaagagat 39714265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 31 - 74
Target Start/End: Complemental strand, 23633208 - 23633165
Alignment:
Q  31 aataggttaagtatagcaagacgggttaacatttatatgtaaga 74  Q
    ||||||||||||||||| ||||||||||||||||||| ||||||    
T  23633208 aataggttaagtatagcgagacgggttaacatttataagtaaga 23633165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 26 - 77
Target Start/End: Complemental strand, 49357761 - 49357710
Alignment:
Q  26 aataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    |||| ||||||||||||||||| ||||| ||||||||||||| |||||||||    
T  49357761 aatataataggttaagtatagcgagacgagttaacatttataagtaagagat 49357710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 77
Target Start/End: Original strand, 4875621 - 4875667
Alignment:
Q  31 aataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    |||| |||||||||||||| ||||||||||||||||| |||||||||    
T  4875621 aatatgttaagtatagcaaaacgggttaacatttataagtaagagat 4875667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 77
Target Start/End: Original strand, 40682318 - 40682364
Alignment:
Q  31 aataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||||||| |||||| |||||||||||| |||||||||    
T  40682318 aataggttaagtatagcgagacggattaacatttataagtaagagat 40682364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 33 - 79
Target Start/End: Original strand, 40682496 - 40682542
Alignment:
Q  33 taggttaagtatagcaagacgggttaacatttatatgtaagagatga 79  Q
    ||||||||||||||| |||||| |||||||||||| |||||||||||    
T  40682496 taggttaagtatagcgagacggattaacatttataagtaagagatga 40682542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 33 - 75
Target Start/End: Original strand, 54093265 - 54093307
Alignment:
Q  33 taggttaagtatagcaagacgggttaacatttatatgtaagag 75  Q
    ||||||||||||| ||||||||||||||||||||| |||||||    
T  54093265 taggttaagtataacaagacgggttaacatttataagtaagag 54093307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 33 - 75
Target Start/End: Original strand, 54095039 - 54095081
Alignment:
Q  33 taggttaagtatagcaagacgggttaacatttatatgtaagag 75  Q
    |||||||||||||||||||||| |||||||||||| |||||||    
T  54095039 taggttaagtatagcaagacggattaacatttataagtaagag 54095081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 77
Target Start/End: Complemental strand, 39405530 - 39405482
Alignment:
Q  29 aaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||| |||||||||||||||||| |||| ||||||| |||||||||    
T  39405530 aaaatagattaagtatagcaagacggtttaatatttataagtaagagat 39405482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 86 - 134
Target Start/End: Complemental strand, 39429925 - 39429877
Alignment:
Q  86 attaaattaaagatgagtatgaattttatcatggattgtctacatcata 134  Q
    ||||||||||||| |||||| ||||||||||||||||| ||||| ||||    
T  39429925 attaaattaaagaggagtattaattttatcatggattgcctacaccata 39429877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 77
Target Start/End: Complemental strand, 9061424 - 9061378
Alignment:
Q  31 aataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    |||||||||||||||| ||||| | |||||||||||| |||||||||    
T  9061424 aataggttaagtatagtaagacagattaacatttataagtaagagat 9061378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 77
Target Start/End: Complemental strand, 22454559 - 22454517
Alignment:
Q  35 ggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    |||||||||||||||| ||||||| |||||||| |||||||||    
T  22454559 ggttaagtatagcaaggcgggttatcatttataagtaagagat 22454517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 67
Target Start/End: Original strand, 49750662 - 49750696
Alignment:
Q  33 taggttaagtatagcaagacgggttaacatttata 67  Q
    ||||||||||||||| |||||||||||||||||||    
T  49750662 taggttaagtatagcgagacgggttaacatttata 49750696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 2527630 - 2527589
Alignment:
Q  36 gttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    |||||||||| | ||||||||||||||||||| |||||||||    
T  2527630 gttaagtatatcgagacgggttaacatttataagtaagagat 2527589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 74
Target Start/End: Complemental strand, 23633038 - 23632997
Alignment:
Q  33 taggttaagtatagcaagacgggttaacatttatatgtaaga 74  Q
    ||||||||||||||| ||| ||||||||||||||| ||||||    
T  23633038 taggttaagtatagcgagatgggttaacatttataagtaaga 23632997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 46420669 - 46420628
Alignment:
Q  36 gttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    |||||||||| ||||||||||||||| ||||| |||||||||    
T  46420669 gttaagtatatcaagacgggttaacaattataagtaagagat 46420628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 22454404 - 22454356
Alignment:
Q  24 gaaataaaataggttaagtatagcaagacgggttaacatttatatgtaa 72  Q
    |||| ||| |||||||||||||||||||||  |||||||||||| ||||    
T  22454404 gaaaaaaattaggttaagtatagcaagacgaattaacatttataagtaa 22454356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 86 - 134
Target Start/End: Original strand, 23424531 - 23424579
Alignment:
Q  86 attaaattaaagatgagtatgaattttatcatggattgtctacatcata 134  Q
    |||| |||||||| |||||| ||||||||||||||||| ||||| ||||    
T  23424531 attagattaaagaggagtattaattttatcatggattgcctacaccata 23424579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 33 - 77
Target Start/End: Original strand, 54094355 - 54094399
Alignment:
Q  33 taggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||| || |||||||| ||||||||||||| |||||||||    
T  54094355 taggttaagcatggcaagacgagttaacatttataagtaagagat 54094399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 33 - 77
Target Start/End: Original strand, 54095145 - 54095189
Alignment:
Q  33 taggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||||| |||| |||||||||||||| |||| ||||    
T  54095145 taggttaagtatagcgagacaggttaacatttataagtaaaagat 54095189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 108; Significance: 5e-54; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 321 - 468
Target Start/End: Original strand, 32904110 - 32904257
Alignment:
Q  321 aagcctctcatggatgcttctttcaatgcttttaattcttcaaattattacattattttggctccaccgaaattcagtttttcagttaggttcttttctg 420  Q
    |||||||| ||| ||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||| |||||||||||||||||||||||||    
T  32904110 aagcctcttatgaatgcttctttcaatgcttttaattcttcaaattattacacttttttcgctccaccgaaatttagtttttcagttaggttcttttctg 32904209  T
Q  421 ctgaatcctcaagtggcgatgacaataatgaagacgacagtgatgatg 468  Q
    ||||||||||||||| ||||||| |||||||||| ||| |||||||||    
T  32904210 ctgaatcctcaagtgacgatgactataatgaagatgacggtgatgatg 32904257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 7855901 - 7855849
Alignment:
Q  25 aaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  7855901 aaataaaataggttaagtatagcaagacgggttaacatttataagtaagagat 7855849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 24683229 - 24683173
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||    
T  24683229 taagaaataaaataggttaagtatggcaagacgggttaacatttataagtaagagat 24683173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 33637593 - 33637537
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  33637593 taagaaataaaataggttaagtatagcaagacgagttaacatttataagtaagagat 33637537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 34872923 - 34872975
Alignment:
Q  25 aaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  34872923 aaataaaataggttaagtatagcaagacgggttaacatttataagtaagagat 34872975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 29468549 - 29468602
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaacatttatatgtaaga 74  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  29468549 taagaaataaaataggttaagtattgcaagacgggttaacatttataagtaaga 29468602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 4849554 - 4849610
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||    
T  4849554 taagaaataaaataggttaagtatagcaagacggattaacatttataagtaatagat 4849610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 9150746 - 9150802
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||    
T  9150746 taagaaataaaataggttaaatatagcaagacggattaacatttataagtaagagat 9150802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 17171467 - 17171523
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||||||||||||||||||||| || |||||||||||| |||||||||    
T  17171467 taagaaataaaataggttaagtatagcaagagggattaacatttataagtaagagat 17171523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 24683959 - 24683903
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||    
T  24683959 taagaaataaaataggctaagtatagcaagacgggttaacatttataaataagagat 24683903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 35156309 - 35156257
Alignment:
Q  25 aaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  35156309 aaataaaataggttaagtatagcaagacgggttaacatttataaataagagat 35156257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 39648793 - 39648737
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||||||||||||||||||||| || |||||||||||| |||||||||    
T  39648793 taagaaataaaataggttaagtatagcaagaaggattaacatttataagtaagagat 39648737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 44805689 - 44805741
Alignment:
Q  25 aaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    |||||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  44805689 aaataaaataggttaagtatagcaagacggattaacatttataagtaagagat 44805741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 31 - 77
Target Start/End: Complemental strand, 20077973 - 20077927
Alignment:
Q  31 aataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||    
T  20077973 aataggttaagtatagcaagacgggttaacatttataagtaagagat 20077927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 31 - 77
Target Start/End: Original strand, 24396632 - 24396678
Alignment:
Q  31 aataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||    
T  24396632 aataggttaagtatagcaagacgggttaacatttataagtaagagat 24396678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 27733889 - 27733833
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||||||||| |||||||||||| |||||| ||||||| |||||||||    
T  27733889 taagaaataaaataggttatgtatagcaagacaggttaaaatttataagtaagagat 27733833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 49144970 - 49144914
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    |||||||||||||| |||||||||||||||||| ||||||||||||| |||| ||||    
T  49144970 taagaaataaaataagttaagtatagcaagacgagttaacatttataagtaatagat 49144914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 26 - 77
Target Start/End: Complemental strand, 40107887 - 40107836
Alignment:
Q  26 aataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    |||||||||||||| |||||||||||||| |||||||||||| |||||||||    
T  40107887 aataaaataggttatgtatagcaagacggattaacatttataagtaagagat 40107836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 31897634 - 31897578
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||||||||||||||||||| |||| | |||||||||| ||| |||||    
T  31897634 taagaaataaaataggttaagtatagcaaaacggatgaacatttataagtaggagat 31897578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 77
Target Start/End: Complemental strand, 38029540 - 38029494
Alignment:
Q  31 aataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||||||| |||| |||||||||||||| |||||||||    
T  38029540 aataggttaagtatagcgagacaggttaacatttataagtaagagat 38029494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 77
Target Start/End: Original strand, 39704063 - 39704109
Alignment:
Q  31 aataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    |||||||||||||| || ||||||||||||||||||| |||||||||    
T  39704063 aataggttaagtattgcgagacgggttaacatttataagtaagagat 39704109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 77
Target Start/End: Complemental strand, 40107653 - 40107607
Alignment:
Q  31 aataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||||||| ||| ||||||||||||||| |||||||||    
T  40107653 aataggttaagtatagcgagatgggttaacatttataagtaagagat 40107607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 20077791 - 20077750
Alignment:
Q  36 gttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    |||||||||||| ||||||||||||||||||| |||||||||    
T  20077791 gttaagtatagcgagacgggttaacatttataagtaagagat 20077750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 77
Target Start/End: Complemental strand, 32201472 - 32201428
Alignment:
Q  33 taggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||||| |||||| |||||||||||| |||||||||    
T  32201472 taggttaagtatagcgagacggattaacatttataagtaagagat 32201428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 77
Target Start/End: Complemental strand, 728920 - 728874
Alignment:
Q  31 aataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||||||| |||||||||||||| ||||  ||||||||    
T  728920 aataggttaagtatagcgagacgggttaacatctataactaagagat 728874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 67
Target Start/End: Complemental strand, 12409570 - 12409536
Alignment:
Q  33 taggttaagtatagcaagacgggttaacatttata 67  Q
    ||||||||||||||| |||||||||||||||||||    
T  12409570 taggttaagtatagcgagacgggttaacatttata 12409536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 77
Target Start/End: Complemental strand, 20077618 - 20077572
Alignment:
Q  31 aataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    |||| |||||||||||| ||||| ||||||||||||| |||||||||    
T  20077618 aataagttaagtatagcgagacgagttaacatttataagtaagagat 20077572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 77
Target Start/End: Complemental strand, 36158642 - 36158596
Alignment:
Q  31 aataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||| ||||||||||| ||||||||||| ||||||| |||||||||    
T  36158642 aatagattaagtatagcgagacgggttaagatttataagtaagagat 36158596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 86 - 134
Target Start/End: Original strand, 5004248 - 5004296
Alignment:
Q  86 attaaattaaagatgagtatgaattttatcatggattgtctacatcata 134  Q
    |||||||||||||  ||||| |||||||||||||||| |||||| ||||    
T  5004248 attaaattaaagagaagtattaattttatcatggattatctacaccata 5004296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 4465290 - 4465234
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  4465290 taagaaataaaataggttaagtatagcaagacgggttaacatttataagtaagagat 4465234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 12761340 - 12761396
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  12761340 taagaaataaaataggttaagtatagcaagacgggttaacatttataagtaagagat 12761396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 41532652 - 41532596
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  41532652 taagaaataaaataggttaagtatagcaagacgggttaacatttataagtaagagat 41532596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 1944292 - 1944348
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||    
T  1944292 taagaaataaaataggttaagtatggcaagacgggttaacatttataagtaagagat 1944348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 7390420 - 7390476
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  7390420 taagaaataaaataggttaagtatagcaagacggattaacatttataagtaagagat 7390476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 8762116 - 8762172
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||    
T  8762116 taagaaataaaataggttaagtatggcaagacgggttaacatttataagtaagagat 8762172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 25834936 - 25834880
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||    
T  25834936 taagaaataaaataggttaagtatggcaagacgggttaacatttataagtaagagat 25834880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 25835568 - 25835512
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  25835568 taagaaataaaataggttaagtatagcaagacgggttaacatttataaataagagat 25835512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 32845679 - 32845735
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||    
T  32845679 taagaaataaaataggttaagtatggcaagacgggttaacatttataagtaagagat 32845735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 1943549 - 1943605
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||    
T  1943549 taagaaataaaataggctaagtatagcaagacgggttaacatttataaataagagat 1943605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 8162080 - 8162024
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||    
T  8162080 taagaaataaaataggctaagtatagcaagacgggttaacatttataaataagagat 8162024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 8761484 - 8761540
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||    
T  8761484 taagaaataaaataggctaagtatagcaagacgggttaacatttataaataagagat 8761540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 9473344 - 9473396
Alignment:
Q  25 aaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  9473344 aaataaaataggttaagtatagcaacacgggttaacatttataagtaagagat 9473396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 32844935 - 32844991
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||    
T  32844935 taagaaataaaataggctaagtatagcaagacgggttaacatttataaataagagat 32844991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 36777700 - 36777752
Alignment:
Q  25 aaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  36777700 aaataaaataggttaagtatagcaagacgggctaacatttataagtaagagat 36777752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 41157752 - 41157808
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||||||||||||||||||||| || |||||||||||| |||||||||    
T  41157752 taagaaataaaataggttaagtatagcaagatggtttaacatttataagtaagagat 41157808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 44381605 - 44381549
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||    
T  44381605 taagaaatacaataggttaagtatagtaagacgggttaacatttataagtaagagat 44381549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 21 - 67
Target Start/End: Complemental strand, 8161337 - 8161291
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaacatttata 67  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||    
T  8161337 taagaaataaaataggttaagtataacaagacgggttaacatttata 8161291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 31 - 77
Target Start/End: Original strand, 34893215 - 34893261
Alignment:
Q  31 aataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||    
T  34893215 aataggttaagtatagcaagacgggttaacatttataagtaagagat 34893261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 32846316 - 32846368
Alignment:
Q  25 aaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||||||||||  ||||||||||||||||||||| |||||||||    
T  32846316 aaataaaataggttaagtatgacaagacgggttaacatttataagtaagagat 32846368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 31 - 77
Target Start/End: Complemental strand, 24254977 - 24254931
Alignment:
Q  31 aataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||||    
T  24254977 aataggttaagtatagcgagacgggttaacatttataagtaagagat 24254931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 31 - 77
Target Start/End: Original strand, 27853954 - 27854000
Alignment:
Q  31 aataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    |||||||||||||||||||||||| |||||||||||| |||||||||    
T  27853954 aataggttaagtatagcaagacggattaacatttataagtaagagat 27854000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 25619596 - 25619540
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||||||||||||||||| ||| | ||||||||||||| |||| ||||    
T  25619596 taagaaataaaataggttaagtatagccagatgagttaacatttataagtaatagat 25619540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 86 - 134
Target Start/End: Complemental strand, 42346093 - 42346045
Alignment:
Q  86 attaaattaaagatgagtatgaattttatcatggattgtctacatcata 134  Q
    |||| |||||||| |||||| ||||||||||||||||| ||||| ||||    
T  42346093 attagattaaagaggagtattaattttatcatggattgcctacaccata 42346045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 37)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 753008 - 752952
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  753008 taagaaataaaataggttaagtatagcaagacgggttaacatttataagtaagagat 752952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 26601490 - 26601434
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  26601490 taagaaataaaataggttaagtatagcaagacgggttaacatttataagtaagagat 26601434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 3087352 - 3087300
Alignment:
Q  25 aaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  3087352 aaataaaataggttaagtatagcaagacgggttaacatttataagtaagagat 3087300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 34726198 - 34726142
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  34726198 taagaaataaaataggttaagtatagcaagacgagttaacatttataagtaagagat 34726142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 36885716 - 36885664
Alignment:
Q  25 aaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  36885716 aaataaaataggttaagtatagcaagacgggttaacatttataagtaagagat 36885664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 42976217 - 42976165
Alignment:
Q  25 aaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  42976217 aaataaaataggttaagtatagcaagacgggttaacatttataagtaagagat 42976165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 28 - 77
Target Start/End: Complemental strand, 17637621 - 17637572
Alignment:
Q  28 taaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  17637621 taaaataggttaagtatagcaagacgggttaacatttataagtaagagat 17637572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 753751 - 753695
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||    
T  753751 taagaaataaaataggctaagtatagcaagacgggttaacatttataaataagagat 753695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 2181950 - 2182006
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||    
T  2181950 taagaaataaaataggttaagtatagcaagatgagttaacatttataagtaagagat 2182006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 6304745 - 6304689
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    |||||||||||||||| |||||||||||||||| ||||||||||||| |||||||||    
T  6304745 taagaaataaaataggctaagtatagcaagacgagttaacatttataagtaagagat 6304689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 30180530 - 30180586
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||||||||||||||||||||| || |||||||||||| |||||||||    
T  30180530 taagaaataaaataggttaagtatagcaagaaggattaacatttataagtaagagat 30180586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 73
Target Start/End: Complemental strand, 33705580 - 33705528
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaacatttatatgtaag 73  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  33705580 taagaaataaaataggttaagtatagaaagacgggttaacatttataagtaag 33705528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 34718031 - 34718087
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||||||||||||||||||||| || |||||||||||| |||||||||    
T  34718031 taagaaataaaataggttaagtatagcaagagggattaacatttataagtaagagat 34718087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 41691715 - 41691771
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||||||||||||||||||||| || |||||||||||| |||||||||    
T  41691715 taagaaataaaataggttaagtatagcaagagggattaacatttataagtaagagat 41691771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 42976839 - 42976787
Alignment:
Q  25 aaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    |||||||||||||||||||||||||||| |||||||||||||| |||||||||    
T  42976839 aaataaaataggttaagtatagcaagacaggttaacatttataagtaagagat 42976787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 43137213 - 43137157
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    |||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||    
T  43137213 taagaaataaaataggttaagtatggcaagacgggttaatatttataagtaagagat 43137157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 43137845 - 43137789
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||    
T  43137845 taagaaataaaataggctaagtatagcaagacgggttaacatttataaataagagat 43137789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 21 - 63
Target Start/End: Complemental strand, 25696360 - 25696318
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaacatt 63  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  25696360 taagaaataaaataggttaagtatagcaagacggattaacatt 25696318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 33 - 77
Target Start/End: Original strand, 42691999 - 42692043
Alignment:
Q  33 taggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||||| ||||||||||||||||||| |||||||||    
T  42691999 taggttaagtatagcgagacgggttaacatttataagtaagagat 42692043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 60
Target Start/End: Complemental strand, 12419385 - 12419346
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaac 60  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  12419385 taagaaataaaataggttaagtatagcaagacgagttaac 12419346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 77
Target Start/End: Complemental strand, 3891215 - 3891169
Alignment:
Q  31 aataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    |||||||||||||||||||||||  |||||||||||| |||||||||    
T  3891215 aataggttaagtatagcaagacgaattaacatttataagtaagagat 3891169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 77
Target Start/End: Original strand, 25480407 - 25480453
Alignment:
Q  31 aataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||||||||||||  ||||||||||||| |||||||||    
T  25480407 aataggttaagtatagcaagacaagttaacatttataagtaagagat 25480453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 77
Target Start/End: Original strand, 25480752 - 25480798
Alignment:
Q  31 aataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||||||| |||| |||||||||||||| |||||||||    
T  25480752 aataggttaagtatagcgagacaggttaacatttataagtaagagat 25480798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 77
Target Start/End: Original strand, 39914424 - 39914470
Alignment:
Q  31 aataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||||||| ||| ||||||||||||||| |||||||||    
T  39914424 aataggttaagtatagcgagatgggttaacatttataagtaagagat 39914470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 77
Target Start/End: Original strand, 42691820 - 42691866
Alignment:
Q  31 aataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    |||||||||||||||| ||||||| |||||||||||| |||||||||    
T  42691820 aataggttaagtatagtaagacggattaacatttataagtaagagat 42691866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 86 - 134
Target Start/End: Original strand, 4606948 - 4606996
Alignment:
Q  86 attaaattaaagatgagtatgaattttatcatggattgtctacatcata 134  Q
    ||||||||||||| |||||| ||||||||||||||||| ||||| ||||    
T  4606948 attaaattaaagaggagtattaattttatcatggattgcctacaccata 4606996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 31 - 67
Target Start/End: Original strand, 18241544 - 18241580
Alignment:
Q  31 aataggttaagtatagcaagacgggttaacatttata 67  Q
    |||| ||||||||||||||||||||||||||||||||    
T  18241544 aataagttaagtatagcaagacgggttaacatttata 18241580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 77
Target Start/End: Original strand, 18241727 - 18241771
Alignment:
Q  33 taggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||||| |||| |||||||||||||| |||||||||    
T  18241727 taggttaagtatagcgagacaggttaacatttataagtaagagat 18241771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 77
Target Start/End: Original strand, 19121651 - 19121695
Alignment:
Q  33 taggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||||| |||||| |||||||||||| |||||||||    
T  19121651 taggttaagtatagcgagacggattaacatttataagtaagagat 19121695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 77
Target Start/End: Complemental strand, 3890981 - 3890942
Alignment:
Q  38 taagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    |||||||||| ||||||||||||||||||| |||||||||    
T  3890981 taagtatagcgagacgggttaacatttataagtaagagat 3890942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 74
Target Start/End: Complemental strand, 41290600 - 41290557
Alignment:
Q  31 aataggttaagtatagcaagacgggttaacatttatatgtaaga 74  Q
    ||||||||||||||| ||||||| ||||||||||||| ||||||    
T  41290600 aataggttaagtataacaagacgagttaacatttataagtaaga 41290557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 77
Target Start/End: Original strand, 19121758 - 19121804
Alignment:
Q  31 aataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||||| | |||||| |||||||||||| |||||||||    
T  19121758 aataggttaagtataacgagacggattaacatttataagtaagagat 19121804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 77
Target Start/End: Original strand, 35392790 - 35392832
Alignment:
Q  35 ggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    |||||||||||||||||| ||||| |||||||| |||||||||    
T  35392790 ggttaagtatagcaagactggttatcatttataagtaagagat 35392832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 127
Target Start/End: Complemental strand, 4821260 - 4821219
Alignment:
Q  86 attaaattaaagatgagtatgaattttatcatggattgtcta 127  Q
    ||||||||||| | |||||| |||||||||||||||||||||    
T  4821260 attaaattaaaaaggagtattaattttatcatggattgtcta 4821219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 5398897 - 5398856
Alignment:
Q  36 gttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    |||||||||||| |||||||||||||| |||| |||||||||    
T  5398897 gttaagtatagcgagacgggttaacatgtataagtaagagat 5398856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 86 - 134
Target Start/End: Original strand, 1969839 - 1969887
Alignment:
Q  86 attaaattaaagatgagtatgaattttatcatggattgtctacatcata 134  Q
    |||| |||||||| |||||| ||||||||||||||||| ||||| ||||    
T  1969839 attagattaaagaggagtattaattttatcatggattgcctacaccata 1969887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 33 - 77
Target Start/End: Original strand, 25480575 - 25480619
Alignment:
Q  33 taggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||| ||| ||||| ||||||||||||| |||||||||    
T  25480575 taggttaagtacagctagacgagttaacatttataagtaagagat 25480619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 5427419 - 5427475
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  5427419 taagaaataaaataggttaagtatagcaagacgggttaacatttataagtaagagat 5427475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 19321245 - 19321189
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  19321245 taagaaataaaataggttaagtatagcaagacgggttaacatttataagtaagagat 19321189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 28572249 - 28572305
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  28572249 taagaaataaaataggttaagtatagcaagacgggttaacatttataagtaagagat 28572305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 52311285 - 52311341
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  52311285 taagaaataaaataggttaagtatagcaagacgggttaacatttataagtaagagat 52311341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 1827551 - 1827607
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  1827551 taagaaataaaataagttaagtatagcaagacgggttaacatttataagtaagagat 1827607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 16301389 - 16301445
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||    
T  16301389 taagaaataaaataggttaagtatagcaagacgggttaacattaataagtaagagat 16301445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 47136965 - 47137021
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  47136965 taagaaataaaataggttaagtatagtaagacgggttaacatttataagtaagagat 47137021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 50562505 - 50562561
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  50562505 taagaaataaaataggttaagtatagcaagacgagttaacatttataagtaagagat 50562561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 21 - 74
Target Start/End: Complemental strand, 22198191 - 22198138
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaacatttatatgtaaga 74  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  22198191 taagaaataaaataggttaagtattgcaagacgggttaacatttataagtaaga 22198138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 21 - 74
Target Start/End: Complemental strand, 33074942 - 33074889
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaacatttatatgtaaga 74  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  33074942 taagaaataaaataggttaagtattgcaagacgggttaacatttataagtaaga 33074889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 4892541 - 4892597
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||||||||||||||||||||| || |||||||||||| |||||||||    
T  4892541 taagaaataaaataggttaagtatagcaagagggattaacatttataagtaagagat 4892597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 28571506 - 28571562
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||    
T  28571506 taagaaataaaataggctaagtatagcaagacgggttaacatttataaataagagat 28571562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 29185946 - 29185890
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||||||||||||||||||||| || |||||||||||| |||||||||    
T  29185946 taagaaataaaataggttaagtatagcaagagggattaacatttataagtaagagat 29185890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 33362144 - 33362200
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||||||||||||||||||||| || |||||||||||| |||||||||    
T  33362144 taagaaataaaataggttaagtatagcaagagggattaacatttataagtaagagat 33362200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 38895920 - 38895972
Alignment:
Q  25 aaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||||||||||| ||||||||||||||||||||| |||||||||    
T  38895920 aaataaaataggttaagtataacaagacgggttaacatttataagtaagagat 38895972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 46624303 - 46624251
Alignment:
Q  25 aaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||| ||||||||||||||||||||||||||||||| |||||||||    
T  46624303 aaataaaatagcttaagtatagcaagacgggttaacatttataagtaagagat 46624251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 31 - 77
Target Start/End: Original strand, 28946791 - 28946837
Alignment:
Q  31 aataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||    
T  28946791 aataggttaagtatagcaagacgggttaacatttataagtaagagat 28946837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 31 - 77
Target Start/End: Original strand, 28947144 - 28947190
Alignment:
Q  31 aataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||||    
T  28947144 aataggttaagtatagcgagacgggttaacatttataagtaagagat 28947190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 31 - 77
Target Start/End: Complemental strand, 50290011 - 50289965
Alignment:
Q  31 aataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||||||||||||||||||| ||||||| |||||||||    
T  50290011 aataggttaagtatagcaagacgggttaagatttataagtaagagat 50289965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 86 - 134
Target Start/End: Complemental strand, 50428134 - 50428086
Alignment:
Q  86 attaaattaaagatgagtatgaattttatcatggattgtctacatcata 134  Q
    ||||||||||||| |||||| ||||||||||||||||||||||| ||||    
T  50428134 attaaattaaagaggagtattaattttatcatggattgtctacaccata 50428086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 77
Target Start/End: Original strand, 45914202 - 45914248
Alignment:
Q  31 aataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    |||||||||||||||| || ||||||||||||||||| |||||||||    
T  45914202 aataggttaagtatagtaaaacgggttaacatttataagtaagagat 45914248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 77
Target Start/End: Original strand, 28946965 - 28947009
Alignment:
Q  33 taggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||||| ||| ||||||||||||||| |||||||||    
T  28946965 taggttaagtatagcgagaagggttaacatttataagtaagagat 28947009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 67
Target Start/End: Original strand, 21008076 - 21008110
Alignment:
Q  33 taggttaagtatagcaagacgggttaacatttata 67  Q
    ||||||||||||||| |||||||||||||||||||    
T  21008076 taggttaagtatagcgagacgggttaacatttata 21008110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 77
Target Start/End: Original strand, 39268437 - 39268483
Alignment:
Q  31 aataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    |||||||||| |||||| || |||||||||||||||| |||||||||    
T  39268437 aataggttaaatatagcgagccgggttaacatttataagtaagagat 39268483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 37 - 77
Target Start/End: Original strand, 39268720 - 39268760
Alignment:
Q  37 ttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    |||| |||||||||||| ||||||||||||| |||||||||    
T  39268720 ttaaatatagcaagacgcgttaacatttataagtaagagat 39268760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 33 - 77
Target Start/End: Original strand, 50562746 - 50562790
Alignment:
Q  33 taggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||||| |||||| |||||||||||| |||| ||||    
T  50562746 taggttaagtatagcgagacggattaacatttataagtaatagat 50562790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2127 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: scaffold2127
Description:

Target: scaffold2127; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 807 - 863
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  807 taagaaataaaataggttaagtatagtaagacgggttaacatttataagtaagagat 863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 8e-19; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 33320371 - 33320315
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  33320371 taagaaataaaataggttaagtctagcaagacgggttaacatttataagtaagagat 33320315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 21 - 74
Target Start/End: Complemental strand, 4896781 - 4896728
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaacatttatatgtaaga 74  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  4896781 taagaaataaaataggttaagtattgcaagacgggttaacatttataagtaaga 4896728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 1220961 - 1221017
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||||||||||||||||||||| || |||||||||||| |||||||||    
T  1220961 taagaaataaaataggttaagtatagcaagagggattaacatttataagtaagagat 1221017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 21054950 - 21055006
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    |||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||    
T  21054950 taagaaataaaataggttaagtatagcaagacggattaacatatataagtaagagat 21055006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 24446368 - 24446424
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||||||||||||||||||||| || |||||||||||| |||||||||    
T  24446368 taagaaataaaataggttaagtatagcaagagggattaacatttataagtaagagat 24446424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 35159293 - 35159349
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||||||||||||||||||||| || |||||||||||| |||||||||    
T  35159293 taagaaataaaataggttaagtatagcaagatggtttaacatttataagtaagagat 35159349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 4109160 - 4109216
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||| |||| ||||    
T  4109160 taagaaataaaataggttaagtatagcaagatgtgttaacatttataagtaatagat 4109216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 77
Target Start/End: Original strand, 19989470 - 19989516
Alignment:
Q  31 aataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    |||||||||| |||||| ||||||||||||||||||| |||||||||    
T  19989470 aataggttaaatatagcgagacgggttaacatttataagtaagagat 19989516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 33007571 - 33007612
Alignment:
Q  36 gttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    |||||||||||| ||||||||||||||||||| |||||||||    
T  33007571 gttaagtatagcgagacgggttaacatttataagtaagagat 33007612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 77
Target Start/End: Original strand, 19989294 - 19989338
Alignment:
Q  33 taggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||||| | ||||||||||||||||| |||||||||    
T  19989294 taggttaagtatagcgaaacgggttaacatttataagtaagagat 19989338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 77
Target Start/End: Original strand, 35159350 - 35159394
Alignment:
Q  33 taggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||||| ||||||||||||||||||| |||| ||||    
T  35159350 taggttaagtatagcgagacgggttaacatttataagtaatagat 35159394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 77
Target Start/End: Original strand, 19989115 - 19989161
Alignment:
Q  31 aataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    |||||| |||||||||| ||| ||||||||||||||| |||||||||    
T  19989115 aataggataagtatagcgagatgggttaacatttataagtaagagat 19989161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 37 - 77
Target Start/End: Original strand, 14366077 - 14366117
Alignment:
Q  37 ttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||| |||||| |||||||||||| |||||||||    
T  14366077 ttaagtatagcgagacggattaacatttataagtaagagat 14366117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 37 - 77
Target Start/End: Original strand, 14366378 - 14366418
Alignment:
Q  37 ttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||  ||||||||||||||||||| |||||||||    
T  14366378 ttaagtatagagagacgggttaacatttataagtaagagat 14366418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 8e-19; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 6931235 - 6931291
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  6931235 taagaaataaaataggttaagtatagcaagacggggtaacatttataagtaagagat 6931291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 9543461 - 9543405
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  9543461 taagaaataaaataggttaagtatagcaagacggattaacatttataagtaagagat 9543405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 18091539 - 18091483
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||    
T  18091539 taagaaataaaataggttaagtatagcaagacaggttaacatttataagtaagagat 18091483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 19485117 - 19485065
Alignment:
Q  25 aaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  19485117 aaataaaataggttaagtatagcaagacgggttaacatttataagtaagagat 19485065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 19487380 - 19487432
Alignment:
Q  25 aaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  19487380 aaataaaataggttaagtatagcaagacgggttaacatttataagtaagagat 19487432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 42781786 - 42781838
Alignment:
Q  25 aaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  42781786 aaataaaataggttaagtatagcaagacgggttaacatttataagtaagagat 42781838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 28609051 - 28609098
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaacatttatat 68  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  28609051 taagaaataaaataggttaagtatagcaagacgggttaacatttatat 28609098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 1513698 - 1513642
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||||||||||||||||||| || |||||||||||||| |||||||||    
T  1513698 taagaaataaaataggttaagtatagcaaaacaggttaacatttataagtaagagat 1513642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 4290494 - 4290438
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||||||||||||||||||||| || |||||||||||| |||||||||    
T  4290494 taagaaataaaataggttaagtatagcaagagggattaacatttataagtaagagat 4290438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 32676472 - 32676416
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||    
T  32676472 taagaaataaaataggttaattatagtaagacgggttaacatttataagtaagagat 32676416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 31 - 77
Target Start/End: Complemental strand, 25236540 - 25236494
Alignment:
Q  31 aataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||    
T  25236540 aataggttaagtatagcaagacgggttaacatttataagtaagagat 25236494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 10875338 - 10875286
Alignment:
Q  25 aaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||| ||||||||||||||||| ||||||||||||| |||||||||    
T  10875338 aaataaaatagcttaagtatagcaagacgagttaacatttataagtaagagat 10875286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 33 - 77
Target Start/End: Original strand, 25883087 - 25883131
Alignment:
Q  33 taggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||||| ||||||||||||||||||| |||||||||    
T  25883087 taggttaagtatagcgagacgggttaacatttataagtaagagat 25883131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 31 - 67
Target Start/End: Complemental strand, 37995273 - 37995237
Alignment:
Q  31 aataggttaagtatagcaagacgggttaacatttata 67  Q
    ||||||||||||||| |||||||||||||||||||||    
T  37995273 aataggttaagtatatcaagacgggttaacatttata 37995237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 65
Target Start/End: Original strand, 10128748 - 10128782
Alignment:
Q  31 aataggttaagtatagcaagacgggttaacattta 65  Q
    ||||||||||||||||| |||||||||||||||||    
T  10128748 aataggttaagtatagcgagacgggttaacattta 10128782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 86 - 134
Target Start/End: Complemental strand, 20992007 - 20991959
Alignment:
Q  86 attaaattaaagatgagtatgaattttatcatggattgtctacatcata 134  Q
    |||| |||||||| |||||| ||||||||||||||||| ||||| ||||    
T  20992007 attagattaaagaggagtattaattttatcatggattgcctacaccata 20991959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 33 - 77
Target Start/End: Original strand, 25883244 - 25883288
Alignment:
Q  33 taggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||| | |||||||||||||||||||  ||||||||    
T  25883244 taggttaagtataccgagacgggttaacatttataaataagagat 25883288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 29529681 - 29529630
Alignment:
Q  25 aaataaaataggttaagtatagcaagacgggttaacatttatatgtaagaga 76  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  29529681 aaataaaataggttaagtatagcaagacgggttaacatttataagtaagaga 29529630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 8526996 - 8526944
Alignment:
Q  25 aaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    |||||||||||||||||||||||||||| |||||||||||||| |||||||||    
T  8526996 aaataaaataggttaagtatagcaagacaggttaacatttataagtaagagat 8526944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 26101600 - 26101548
Alignment:
Q  25 aaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  26101600 aaataaaataggttaagtatagcaagacgagttaacatttataagtaagagat 26101548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 21 - 67
Target Start/End: Complemental strand, 55293600 - 55293554
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaacatttata 67  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||    
T  55293600 taagaaataaaataggttatgtatagcaagacgggttaacatttata 55293554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 19361556 - 19361504
Alignment:
Q  25 aaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||||||||||||||||||| ||||| ||||||| |||||||||    
T  19361556 aaataaaataggttaagtatagcaagacgagttaatatttataagtaagagat 19361504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 31 - 77
Target Start/End: Original strand, 47757043 - 47757089
Alignment:
Q  31 aataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||||    
T  47757043 aataggttaagtatagcaagacgggttaacattaataagtaagagat 47757089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 19368262 - 19368221
Alignment:
Q  25 aaataaaataggttaagtatagcaagacgggttaacatttat 66  Q
    ||||||||||| ||||||||||||||||||||||||||||||    
T  19368262 aaataaaatagcttaagtatagcaagacgggttaacatttat 19368221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 33 - 77
Target Start/End: Complemental strand, 11585894 - 11585850
Alignment:
Q  33 taggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||||| ||||||||||||||||||| |||||||||    
T  11585894 taggttaagtatagcgagacgggttaacatttataagtaagagat 11585850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 35856004 - 35856056
Alignment:
Q  25 aaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    |||||||||| ||||| ||||||||||||| |||||||||||| |||||||||    
T  35856004 aaataaaataagttaaatatagcaagacggattaacatttataagtaagagat 35856056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 77
Target Start/End: Complemental strand, 13495750 - 13495704
Alignment:
Q  31 aataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||| ||||||||||| ||||| |||||||||||||||||||||||    
T  13495750 aatagattaagtatagcgagacgcgttaacatttatatgtaagagat 13495704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 77
Target Start/End: Complemental strand, 8235092 - 8235046
Alignment:
Q  31 aataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||||||| |||| | |||||||||||| |||||||||    
T  8235092 aataggttaagtatagcgagacagattaacatttataagtaagagat 8235046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 77
Target Start/End: Complemental strand, 13495577 - 13495528
Alignment:
Q  28 taaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    |||| ||||||||||||||  | ||||||||||||||||| |||||||||    
T  13495577 taaattaggttaagtatagttaaacgggttaacatttataagtaagagat 13495528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 51657172 - 51657131
Alignment:
Q  36 gttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    |||||||||| | ||||||||||||||||||| |||||||||    
T  51657172 gttaagtatatcgagacgggttaacatttataagtaagagat 51657131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 37 - 77
Target Start/End: Original strand, 9770650 - 9770690
Alignment:
Q  37 ttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||| || |||||||||||||| |||||||||    
T  9770650 ttaagtatagcaaaacaggttaacatttataagtaagagat 9770690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 37 - 77
Target Start/End: Complemental strand, 11583488 - 11583448
Alignment:
Q  37 ttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||| |||||| |||||||||||| |||||||||    
T  11583488 ttaagtatagcgagacggattaacatttataagtaagagat 11583448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 33 - 77
Target Start/End: Complemental strand, 11586053 - 11586009
Alignment:
Q  33 taggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||| | ||||| ||||||||||||| |||||||||    
T  11586053 taggttaagtataacgagacgagttaacatttataagtaagagat 11586009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 86 - 134
Target Start/End: Complemental strand, 43768747 - 43768699
Alignment:
Q  86 attaaattaaagatgagtatgaattttatcatggattgtctacatcata 134  Q
    |||| |||||||| |||||| ||||||||||||||||| ||||| ||||    
T  43768747 attagattaaagaggagtattaattttatcatggattgcctacaccata 43768699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0381 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 10326 - 10382
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||    
T  10326 taagaaataaaataggctaagtatagcaagacgggttaacatttataaataagagat 10382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 9533 - 9477
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    |||||||||||||||||||||||||||||||||  |||||||||||| |||||||||    
T  9533 taagaaataaaataggttaagtatagcaagacgatttaacatttataagtaagagat 9477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 18226 - 18170
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||||||||||||||||||||| || |||||||||||| |||||||||    
T  18226 taagaaataaaataggttaagtatagcaagagggattaacatttataagtaagagat 18170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 24 - 74
Target Start/End: Complemental strand, 3771 - 3721
Alignment:
Q  24 gaaataaaataggttaagtatagcaagacgggttaacatttatatgtaaga 74  Q
    ||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  3771 gaaataaaataggttaagtctagcaagacgggttaacatttataagtaaga 3721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 72
Target Start/End: Original strand, 232414 - 232465
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaacatttatatgtaa 72  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||| ||||    
T  232414 taagaaataaaataggttaagtatggcaagacgagttaacatttataagtaa 232465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1155 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: scaffold1155
Description:

Target: scaffold1155; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 31 - 77
Target Start/End: Original strand, 260 - 306
Alignment:
Q  31 aataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||||    
T  260 aataggttaagtatagcgagacgggttaacatttataagtaagagat 306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1155; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 67
Target Start/End: Original strand, 443 - 477
Alignment:
Q  33 taggttaagtatagcaagacgggttaacatttata 67  Q
    ||||||||||||||| |||||||||||||||||||    
T  443 taggttaagtatagcgagacgggttaacatttata 477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0345 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 31 - 77
Target Start/End: Complemental strand, 9957 - 9911
Alignment:
Q  31 aataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||||    
T  9957 aataggttaagtatagcgagacgggttaacatttataagtaagagat 9911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0345; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 67
Target Start/End: Complemental strand, 9774 - 9740
Alignment:
Q  33 taggttaagtatagcaagacgggttaacatttata 67  Q
    ||||||||||||||| |||||||||||||||||||    
T  9774 taggttaagtatagcgagacgggttaacatttata 9740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 21 - 67
Target Start/End: Original strand, 3847 - 3893
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaacatttata 67  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||    
T  3847 taagaaataaaataggttaagtatagcaagactgattaacatttata 3893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 21 - 67
Target Start/End: Original strand, 11587 - 11633
Alignment:
Q  21 taagaaataaaataggttaagtatagcaagacgggttaacatttata 67  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||    
T  11587 taagaaataaaataggttaagtatagcaagactgattaacatttata 11633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 31 - 77
Target Start/End: Original strand, 29023 - 29069
Alignment:
Q  31 aataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||||    
T  29023 aataggttaagtatagcgagacgggttaacatttataagtaagagat 29069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 67
Target Start/End: Original strand, 29206 - 29240
Alignment:
Q  33 taggttaagtatagcaagacgggttaacatttata 67  Q
    ||||||||||||||| |||||||||||||||||||    
T  29206 taggttaagtatagcgagacgggttaacatttata 29240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0642 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0642
Description:

Target: scaffold0642; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 31 - 76
Target Start/End: Complemental strand, 46 - 1
Alignment:
Q  31 aataggttaagtatagcaagacgggttaacatttatatgtaagaga 76  Q
    ||||||||||||||||| ||||||||||||||||||| ||||||||    
T  46 aataggttaagtatagcgagacgggttaacatttataagtaagaga 1  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0484 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0484
Description:

Target: scaffold0484; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 8986 - 8934
Alignment:
Q  25 aaataaaataggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    |||||||||||||||| ||||||||||||| |||||||||||| | |||||||    
T  8986 aaataaaataggttaactatagcaagacggtttaacatttataagcaagagat 8934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 31 - 67
Target Start/End: Complemental strand, 87733 - 87697
Alignment:
Q  31 aataggttaagtatagcaagacgggttaacatttata 67  Q
    |||||||||||||||||||||||||||||||||||||    
T  87733 aataggttaagtatagcaagacgggttaacatttata 87697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 77
Target Start/End: Complemental strand, 87552 - 87508
Alignment:
Q  33 taggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    |||||||| |||||| ||||||||||||||||||| |||||||||    
T  87552 taggttaactatagcgagacgggttaacatttataagtaagagat 87508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 35 - 77
Target Start/End: Complemental strand, 17558 - 17516
Alignment:
Q  35 ggttaagtatagcaagacgggttaacatttatatgtaagagat 77  Q
    ||||||||||||| ||||||||||||||||||| |||||||||    
T  17558 ggttaagtatagcgagacgggttaacatttataagtaagagat 17516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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