View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1596_low_20 (Length: 468)

Name: NF1596_low_20
Description: NF1596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1596_low_20
NF1596_low_20
[»] chr1 (8 HSPs)
chr1 (13-450)||(52289723-52290150)
chr1 (283-357)||(19480656-19480730)
chr1 (362-438)||(49101734-49101809)
chr1 (281-348)||(11045617-11045684)
chr1 (364-450)||(19480550-19480636)
chr1 (357-439)||(37047019-37047100)
chr1 (280-316)||(39714650-39714686)
chr1 (385-437)||(44486145-44486197)
[»] chr2 (3 HSPs)
chr2 (378-450)||(26176306-26176378)
chr2 (372-431)||(18825383-18825442)
chr2 (279-316)||(20456797-20456834)
[»] chr5 (1 HSPs)
chr5 (372-439)||(37421319-37421386)
[»] chr7 (1 HSPs)
chr7 (357-431)||(2344338-2344412)
[»] chr4 (3 HSPs)
chr4 (385-439)||(56409985-56410039)
chr4 (378-438)||(25414195-25414255)
chr4 (363-435)||(34835560-34835632)
[»] chr3 (1 HSPs)
chr3 (280-336)||(26589611-26589667)


Alignment Details
Target: chr1 (Bit Score: 347; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 13 - 450
Target Start/End: Complemental strand, 52290150 - 52289723
Alignment:
Q  13 tcatcaaatgatttgtaatgattagcatggctgtaaattttaaactaagcttaagtttggtgcatagatgaatgttgttatttatcatgagattttgtca 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52290150 tcatcaaatgatttgtaatgattagcatggctgtaaattttaaactaagcttaagtttggtgcatagatgaatgttgttatttatcatgagattttgtca 52290051  T
Q  113 agctaatatgccatacgctcctggaaccgtaaaacagacttctagataagttctagactctccccactcttatttgataaaaatgattgtgcccaatttt 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  52290050 agctaatatgccatacgctcctggaaccgtaaaacagacttctagataagttctagactctccccactcttatttgataaaaatgattgtgccctatttt 52289951  T
Q  213 acttctctttatttagtatggacacgaaatagcccatactttccagtacnnnnnnngttttgtttgtaaaactcggtatccagcataaggaccgactaat 312  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||        ||||||||||||||||       |||||| |||||||||||||    
T  52289950 acttctctttatttagtatggacatgaaatagcccatactttccagtacttctt---ttttgtttgtaaaact-------cagcattaggaccgactaat 52289861  T
Q  313 ccgatggatctaattccaccgtccttttgcggggggacccatttagctttgtatggacttagcctaccaaatttggcaccagggagaatcaaatttgaga 412  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52289860 ccgatggatctaattccaccgtccatttgcggggggacccatttagctttgtatggacttagcctaccaaatttggcaccagggagaatcaaatttgaga 52289761  T
Q  413 gcttaagaggagcacactctaaggtcctaagttaacac 450  Q
     |||||||||||| ||||| |||||| ||||| |||||    
T  52289760 acttaagaggagcgcactccaaggtcataagtcaacac 52289723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 283 - 357
Target Start/End: Complemental strand, 19480730 - 19480656
Alignment:
Q  283 actcggtatccagcataaggaccgactaatccgatggatctaattccaccgtccttttgcggggggacccattta 357  Q
    |||||||||||||| |||||||||||||| |||| ||||| ||| |||||||||   |||||||| |||||||||    
T  19480730 actcggtatccagcctaaggaccgactaacccgagggatccaatcccaccgtccacgtgcgggggtacccattta 19480656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 362 - 438
Target Start/End: Original strand, 49101734 - 49101809
Alignment:
Q  362 tgtatggacttagcctaccaaatttggcaccagggagaatcaaatttgagagcttaagaggagcacactctaaggtc 438  Q
    ||||||||||||||| ||| |||| |||||||||| ||||||||| | ||| ||| |||||||||||||| ||||||    
T  49101734 tgtatggacttagcccaccgaatt-ggcaccagggggaatcaaatgtaagaccttgagaggagcacactccaaggtc 49101809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 281 - 348
Target Start/End: Original strand, 11045617 - 11045684
Alignment:
Q  281 aaactcggtatccagcataaggaccgactaatccgatggatctaattccaccgtccttttgcgggggg 348  Q
    ||||||||||||| ||  ||| |||||||||||||| ||||||||| ||||| |||  ||||||||||    
T  11045617 aaactcggtatccggctcaagaaccgactaatccgagggatctaatcccaccttccacttgcgggggg 11045684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 364 - 450
Target Start/End: Complemental strand, 19480636 - 19480550
Alignment:
Q  364 tatggacttagcctaccaaatttggcaccagggagaatcaaatttgagagcttaagaggagcacactctaaggtcctaagttaacac 450  Q
    ||||||||||||| || ||| ||||||||  || ||||| ||| ||||| ||| |||||||||||||| ||| ||| |||| |||||    
T  19480636 tatggacttagcccactaaaattggcaccgcggggaatcgaatgtgagaccttgagaggagcacactccaagatcccaagtcaacac 19480550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 439
Target Start/End: Complemental strand, 37047100 - 37047019
Alignment:
Q  357 agctttgtatggacttagcctaccaaatttggcaccagggagaatcaaatttgagagcttaagaggagcacactctaaggtcc 439  Q
    |||| |||||||||| |||| |||||| || | ||||||| ||||||||  ||||| ||| |||||||||||||| |||||||    
T  37047100 agctctgtatggact-agcccaccaaaatttgtaccagggggaatcaaacctgagaccttgagaggagcacactccaaggtcc 37047019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 280 - 316
Target Start/End: Original strand, 39714650 - 39714686
Alignment:
Q  280 aaaactcggtatccagcataaggaccgactaatccga 316  Q
    |||||||||||||||||  ||||||||||||||||||    
T  39714650 aaaactcggtatccagcccaaggaccgactaatccga 39714686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 385 - 437
Target Start/End: Original strand, 44486145 - 44486197
Alignment:
Q  385 ttggcaccagggagaatcaaatttgagagcttaagaggagcacactctaaggt 437  Q
    |||||||| ||||||||  ||||||||| ||| |||||||||||||| |||||    
T  44486145 ttggcaccggggagaattgaatttgagaccttgagaggagcacactccaaggt 44486197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 378 - 450
Target Start/End: Original strand, 26176306 - 26176378
Alignment:
Q  378 accaaatttggcaccagggagaatcaaatttgagagcttaagaggagcacactctaaggtcctaagttaacac 450  Q
    |||||| |||||||||||||||||| ||| ||||| ||| |||||||||||| | ||||||| |||| |||||    
T  26176306 accaaaattggcaccagggagaatcgaatctgagaccttgagaggagcacaccccaaggtcccaagtcaacac 26176378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 431
Target Start/End: Complemental strand, 18825442 - 18825383
Alignment:
Q  372 tagcctaccaaatttggcaccagggagaatcaaatttgagagcttaagaggagcacactc 431  Q
    ||||||||| || |||||||| |||| ||||||| |||||| ||| ||||||||||||||    
T  18825442 tagcctaccgaaattggcaccggggaaaatcaaacttgagaccttgagaggagcacactc 18825383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 316
Target Start/End: Complemental strand, 20456834 - 20456797
Alignment:
Q  279 taaaactcggtatccagcataaggaccgactaatccga 316  Q
    ||||||||||||||| || |||||||||||||||||||    
T  20456834 taaaactcggtatccggcctaaggaccgactaatccga 20456797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 439
Target Start/End: Complemental strand, 37421386 - 37421319
Alignment:
Q  372 tagcctaccaaatttggcaccagggagaatcaaatttgagagcttaagaggagcacactctaaggtcc 439  Q
    ||||| |||||| || ||||||||||||||| ||| ||||| | | ||||||||| ||||||||||||    
T  37421386 tagcccaccaaaattagcaccagggagaatcgaatctgagaccgtgagaggagcaaactctaaggtcc 37421319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 431
Target Start/End: Complemental strand, 2344412 - 2344338
Alignment:
Q  357 agctttgtatggacttagcctaccaaatttggcaccagggagaatcaaatttgagagcttaagaggagcacactc 431  Q
    |||| ||||||||||||||| |||||| ||||||||||   ||||| ||| |||||||||  |||||||| ||||    
T  2344412 agctctgtatggacttagcccaccaaaattggcaccagaaggaatcgaatctgagagctttggaggagcaaactc 2344338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 385 - 439
Target Start/End: Complemental strand, 56410039 - 56409985
Alignment:
Q  385 ttggcaccagggagaatcaaatttgagagcttaagaggagcacactctaaggtcc 439  Q
    |||||||||||||||||| ||  ||||| ||| |||||||||||||| |||||||    
T  56410039 ttggcaccagggagaatcgaacctgagaccttgagaggagcacactccaaggtcc 56409985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 378 - 438
Target Start/End: Original strand, 25414195 - 25414255
Alignment:
Q  378 accaaatttggcaccagggagaatcaaatttgagagcttaagaggagcacactctaaggtc 438  Q
    |||||| |||||||| ||||||||||||  |||||  || |||||||||||||| ||||||    
T  25414195 accaaaattggcaccggggagaatcaaacctgagactttgagaggagcacactccaaggtc 25414255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 435
Target Start/End: Complemental strand, 34835632 - 34835560
Alignment:
Q  363 gtatggacttagcctaccaaatttggcaccagggagaatcaaatttgagagcttaagaggagcacactctaag 435  Q
    |||||||||||||| ||| || ||| |||||| | ||||| ||  ||||| ||||||||||||| ||||||||    
T  34835632 gtatggacttagcccaccgaaattgacaccagagggaatcgaacatgagaccttaagaggagcaaactctaag 34835560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 280 - 336
Target Start/End: Original strand, 26589611 - 26589667
Alignment:
Q  280 aaaactcggtatccagcataaggaccgactaatccgatggatctaattccaccgtcc 336  Q
    ||||||||||||||||| ||||  | ||||||||||| || || |||||||||||||    
T  26589611 aaaactcggtatccagcttaagagcagactaatccgaagggtcaaattccaccgtcc 26589667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University