View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1596_low_21 (Length: 468)
Name: NF1596_low_21
Description: NF1596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1596_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 54 - 411
Target Start/End: Original strand, 16374780 - 16375129
Alignment:
| Q |
54 |
tataaatgggcgttcgtccttctcaagaagagcgtatataatagtgggagttgtcaaggccccgtcccatatccatcggtcgatgggctcctc--ctggg |
151 |
Q |
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| T |
16374780 |
tataaatgggtgttcgtccgtctcaagaagagtgtatatagtagtgggagtcgtcaaggccccgtcccatatccatcggtcgatgggctcctcaactggg |
16374879 |
T |
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| Q |
152 |
atatgattatcgttt-cttgccatatcaaacctaaaagggaaagatggaaaaataaattaaaattcaaaccaacctttccttcactgatcgagtcgattt |
250 |
Q |
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| T |
16374880 |
atatgattatgattttcttgccatatcaaacctaaaagggaaagatggaaaaataaattaaaattcaaatcaccctttccttcactgatcgagtcgattt |
16374979 |
T |
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| Q |
251 |
gatgaggagaagtataaatgtttctcgctaacgacgagacccctatggaaaaataaagacacccaaatacctaaaaattctaaggccacaatggtgacca |
350 |
Q |
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| T |
16374980 |
gatgaggagaagtataaatgtttctcgctaacgacgagacccctatggaaaaataaagacacccaaatacctaaaaattctaaggccacaatggcgacca |
16375079 |
T |
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| Q |
351 |
ccttttacagtggaacttgattagactctaagtcataaaccatcgtctaacatcagcattc |
411 |
Q |
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| T |
16375080 |
ccttttactg-----------tagactctaagtcataaaccaccgtctaacatcagcattc |
16375129 |
T |
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