View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1596_low_23 (Length: 455)
Name: NF1596_low_23
Description: NF1596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1596_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 2035161 - 2035414
Alignment:
| Q |
1 |
gttaatttatagtaatttataacttgtatgttactaaaaaatgaggatataagttatcatnnnnnnntcagttgagcaataaatttagatgcaatgtgta |
100 |
Q |
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| T |
2035161 |
gttaatttatagtaattcataacttgtatgttactaaaaaacgaggatataagttatcataaaaaaatcatttgagcaataaatttagatgcaatgtgta |
2035260 |
T |
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| Q |
101 |
tctaaatgaagtaaaaaagaaaataccacatggaaacaagagacagttaaaatgtaagttctggccctacattgattgtttagattactttatttagatg |
200 |
Q |
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| T |
2035261 |
tctaaatgaagtaaaaaagaaaataccacatggaaacaagagacagttaaaatgtaagttctggccctacattgattgtttagattactttatttagatg |
2035360 |
T |
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| Q |
201 |
aaacaagattaatttaagcatatgttataatttcttacttgatctaatcaaaat |
254 |
Q |
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| T |
2035361 |
aaacaagattaatttaagcatatgttataatttcttacatgatttaataaaaat |
2035414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 244 - 441
Target Start/End: Original strand, 2035605 - 2035802
Alignment:
| Q |
244 |
ctaatcaaaatccttatacattgtaagataagatttaattgcttgtttgtttgttatttgtacctgtgtcttgtgatggaggtgcagatagcatgttctt |
343 |
Q |
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| T |
2035605 |
ctaattaaaatccttatacattgtaagataagatttaattgcttgtttgtttgttatttgtacctgtgtcttgtgatggaggtgcagatagcatgttctt |
2035704 |
T |
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| Q |
344 |
ggcagcatcaaactcataaagaaataaaagcaaattgtaccaaatcatactttgcaagaaaacaatctgagctaacaagacaatagcttgatccttat |
441 |
Q |
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| T |
2035705 |
ggcagcatcaaactcataaagaaataaaagcaaattgtaccaaatcatactttgcaagaaaacaatctgagctaacaagacaatagcttcatccttat |
2035802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 345 - 414
Target Start/End: Original strand, 3217443 - 3217512
Alignment:
| Q |
345 |
gcagcatcaaactcataaagaaataaaagcaaattgtaccaaatcatactttgcaagaaaacaatctgag |
414 |
Q |
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| T |
3217443 |
gcagcatcaagctcatgaagaaacaaaagcaaattataccaaatcatactttgcaagaaaataatctgag |
3217512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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