View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1596_low_24 (Length: 450)
Name: NF1596_low_24
Description: NF1596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1596_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 12 - 435
Target Start/End: Complemental strand, 27524400 - 27523971
Alignment:
| Q |
12 |
atgaaaggtactcttatgcagagagacagctagttgcaaatgattctgagtcacaggtttgccatt----tcatccattattctgataacataacctatt |
107 |
Q |
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| T |
27524400 |
atgaaaggtactcctatgcagagagacagctagttgcaaatgattctgagtcacaggtttgccattcagatcagtcatgtttaagatgtta-aacctatt |
27524302 |
T |
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| Q |
108 |
attaatcgaaaaccaaaataataatgacgatataattttaaattgtggtccgcaactgcaattgtgtcgttaagacaaaagttttagaagtcaacatcgg |
207 |
Q |
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| T |
27524301 |
attaatcgaaaaccaaaataataatgacgatataattttaaattgtggtccgcaactgcaattgtgtcgttaagacaaaagttttagaagtcaacatcgg |
27524202 |
T |
|
| Q |
208 |
cattaccaatatcaaggctcacaaaataatctcaaccacgattgcagggaaactggactattgagtatacgcgactgaaggcaaagattgatcttttgca |
307 |
Q |
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| T |
27524201 |
cattaccaatatcaaggctcacaaaataatctcaaccgcgaatgcagggaaactggactattgagtatacgcgactgaaggcaaagattgatcttttgca |
27524102 |
T |
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| Q |
308 |
aagaaactataggtatattattta---tcattatgtactttattaaactttcaacattcactagtcacactgaattattatgacactaaaccctaattag |
404 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
27524101 |
aagaaactataggtatattatttatcatcattatgtactttattaaactttcaacattcattagtcacactgaattattatgacactaaaccctaattag |
27524002 |
T |
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| Q |
405 |
gcactacatgggagaagatttgggatcaatg |
435 |
Q |
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| T |
27524001 |
gcactacatgggagaagatttgggatcaatg |
27523971 |
T |
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