View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1596_low_28 (Length: 431)

Name: NF1596_low_28
Description: NF1596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1596_low_28
NF1596_low_28
[»] chr6 (4 HSPs)
chr6 (19-420)||(7809768-7810169)
chr6 (127-171)||(7795597-7795641)
chr6 (366-420)||(11714245-11714299)
chr6 (305-388)||(33189578-33189664)
[»] chr3 (3 HSPs)
chr3 (172-334)||(10896265-10896428)
chr3 (184-334)||(8868529-8868679)
chr3 (366-417)||(5528340-5528391)
[»] chr4 (3 HSPs)
chr4 (212-290)||(43543103-43543181)
chr4 (344-420)||(13119489-13119564)
chr4 (344-420)||(53402563-53402638)
[»] chr2 (4 HSPs)
chr2 (259-334)||(13778962-13779037)
chr2 (369-420)||(40800196-40800247)
chr2 (366-420)||(17560837-17560891)
chr2 (219-263)||(37171816-37171860)


Alignment Details
Target: chr6 (Bit Score: 378; Significance: 0; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 19 - 420
Target Start/End: Original strand, 7809768 - 7810169
Alignment:
Q  19 tgaaacacatgaagttgtttggtatcgattttgtaatggaccttcctttgattgttggacactttcttactagttctcaaaaagtttgaaattagtaact 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  7809768 tgaaacacatgaagttgtttggtatcgattttgtaatggaccttcctttgattgttgtacactttcttactagttctcaaaaagtttgaaattagtaact 7809867  T
Q  119 gtcaatgatcaagtggaaaggatgttattgtagaggcttctctgcttgaaagttgttatggacatgctagagcatcaatcccatgatgaccaaggaccca 218  Q
    || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7809868 gtgaatggtcaagtggaaaggatgttattgtagaggcttctctgcttgaaagttgttatggacatgctagagcatcaatcccatgatgaccaaggaccca 7809967  T
Q  219 aaaccctcgaaacatgacattacgtcctgagtgagcatgctagttccagtgcgtaccttcgcactgaagcacaaccccacacttcttgcaccgtacacat 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7809968 aaaccctcgaaacatgacattacgtcctgagtgagcatgctagttccggtgcgtaccttcgcactgaagcacaaccccacacttcttgcaccgtacacat 7810067  T
Q  319 gacctccaatggctccctgatcgctgcatttcacggaagccgataaacgcctccttctcctatgtaagggtgactccgagtcaccctgaaggtacgattc 418  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  7810068 gacctccaatggctccctgatcgctgcatttcaaggaagccgataaacgcctccttctcctatgtaagggtgactccgagtcaccctgaaggtatgattc 7810167  T
Q  419 at 420  Q
    ||    
T  7810168 at 7810169  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 127 - 171
Target Start/End: Original strand, 7795597 - 7795641
Alignment:
Q  127 tcaagtggaaaggatgttattgtagaggcttctctgcttgaaagt 171  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||    
T  7795597 tcaagtggaaaggatgttattgtagaagcttctctgctcgaaagt 7795641  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 366 - 420
Target Start/End: Complemental strand, 11714299 - 11714245
Alignment:
Q  366 cgcctccttctcctatgtaagggtgactccgagtcaccctgaaggtacgattcat 420  Q
    ||||| |||||||||| |||||||||||||  |||||||| ||||||| ||||||    
T  11714299 cgccttcttctcctatataagggtgactccacgtcaccctcaaggtacaattcat 11714245  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 388
Target Start/End: Complemental strand, 33189664 - 33189578
Alignment:
Q  305 tgcaccgtacacatgacctccaatggctccctgat----cgctgcatttcacggaagccgataaacgcctccttctcctatgtaaggg 388  Q
    |||| ||||||| || ||||||| |||| ||||||    ||||||||||||||||||| | ||  |||||||||||||||||||||||    
T  33189664 tgcatcgtacacgtggcctccaacggctgcctgatgaggcgctgcatttcacggaagcagttag-cgcctccttctcctatgtaaggg 33189578  T

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Target: chr3 (Bit Score: 64; Significance: 8e-28; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 172 - 334
Target Start/End: Complemental strand, 10896428 - 10896265
Alignment:
Q  172 tgttatggacatgctagagcatcaatcccatgatgac-caaggacccaaaaccctcgaaacatgacattacgtcctgagtgagcatgctagttccagtgc 270  Q
    |||| |||||| ||||||||  |||| |||||| ||| |  |||||||||||| || ||||| ||| ||||  |||||||||||| ||||||||| ||||    
T  10896428 tgttctggacaggctagagcgccaattccatgaagacacgtggacccaaaaccgtcaaaacaagacgttacagcctgagtgagcacgctagttccggtgc 10896329  T
Q  271 gtaccttcgcactgaagcacaaccccacacttcttgcaccgtacacatgacctccaatggctcc 334  Q
      |||  | |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  10896328 acaccaccacactgaagcacacccccacacttcttgcaccgtacacatgtcctccaatggctcc 10896265  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 184 - 334
Target Start/End: Complemental strand, 8868679 - 8868529
Alignment:
Q  184 gctagagcatcaatcccatgatgac-caaggacccaaaaccctcgaaacatgacattacgtcctgagtgagcatgctagttccagtgcgtaccttcgcac 282  Q
    ||||||||  ||||||||||| ||| |  |||||||||||| |||||||| ||| ||||   ||||||||||| ||||||||| ||||  | |  | |||    
T  8868679 gctagagcgccaatcccatgaagacacgtggacccaaaaccgtcgaaacaagacgttacagactgagtgagcacgctagttccggtgcacaacaccacac 8868580  T
Q  283 tgaagcacaaccccacacttcttgcaccgtacacatgacctccaatggctcc 334  Q
    |||||||| |||||   ||||||||||||||||| || ||||||| ||||||    
T  8868579 tgaagcac-accccgtgcttcttgcaccgtacacgtgtcctccaacggctcc 8868529  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 417
Target Start/End: Original strand, 5528340 - 5528391
Alignment:
Q  366 cgcctccttctcctatgtaagggtgactccgagtcaccctgaaggtacgatt 417  Q
    |||||||||||||||| ||||||||| || | |||||||| |||||||||||    
T  5528340 cgcctccttctcctatataagggtgattctgcgtcaccctcaaggtacgatt 5528391  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 212 - 290
Target Start/End: Original strand, 43543103 - 43543181
Alignment:
Q  212 ggacccaaaaccctcgaaacatgacattacgtcctgagtgagcatgctagttccagtgcgtaccttcgcactgaagcac 290  Q
    ||||||||||||||||||| | ||||||||  ||||||||||||||||||||||  |||||| |  ||||| |||||||    
T  43543103 ggacccaaaaccctcgaaataagacattacaacctgagtgagcatgctagttccgatgcgtatcaccgcacggaagcac 43543181  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 344 - 420
Target Start/End: Complemental strand, 13119564 - 13119489
Alignment:
Q  344 gcatttcacggaagccgataaacgcctccttctcctatgtaagggtgactccgagtcaccctgaaggtacgattcat 420  Q
    |||||| |||||||||| ||| |||||||||| ||||| ||||||||||||   ||||| || ||||||||||||||    
T  13119564 gcattttacggaagccgttaa-cgcctccttcacctatataagggtgactcaacgtcactctcaaggtacgattcat 13119489  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 344 - 420
Target Start/End: Complemental strand, 53402638 - 53402563
Alignment:
Q  344 gcatttcacggaagccgataaacgcctccttctcctatgtaagggtgactccgagtcaccctgaaggtacgattcat 420  Q
    |||||||||||||| || ||  |||||| ||||||||| ||||||||| | || |||||||| ||||||||||||||    
T  53402638 gcatttcacggaagacgttag-cgcctcattctcctatataagggtgatttcgcgtcaccctcaaggtacgattcat 53402563  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 334
Target Start/End: Original strand, 13778962 - 13779037
Alignment:
Q  259 tagttccagtgcgtaccttcgcactgaagcacaaccccacacttcttgcaccgtacacatgacctccaatggctcc 334  Q
    ||||||||| |||||||  | |||||||||||  |||||  |||| |||||||||||  |||||||||||||||||    
T  13778962 tagttccagcgcgtaccaccacactgaagcacgcccccatgcttcctgcaccgtacatgtgacctccaatggctcc 13779037  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 420
Target Start/End: Complemental strand, 40800247 - 40800196
Alignment:
Q  369 ctccttctcctatgtaagggtgactccgagtcaccctgaaggtacgattcat 420  Q
    ||||||||||||| ||||||||| | || |||||||| ||||||||||||||    
T  40800247 ctccttctcctatataagggtgatttcgcgtcaccctcaaggtacgattcat 40800196  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 366 - 420
Target Start/End: Complemental strand, 17560891 - 17560837
Alignment:
Q  366 cgcctccttctcctatgtaagggtgactccgagtcaccctgaaggtacgattcat 420  Q
    |||||||||||||||| ||||||||| || | |||||||| ||||||| ||||||    
T  17560891 cgcctccttctcctatataagggtgattctgcgtcaccctcaaggtacaattcat 17560837  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 219 - 263
Target Start/End: Complemental strand, 37171860 - 37171816
Alignment:
Q  219 aaaccctcgaaacatgacattacgtcctgagtgagcatgctagtt 263  Q
    |||||||||||||||||||  ||||||||||| |||| |||||||    
T  37171860 aaaccctcgaaacatgacacaacgtcctgagtaagcacgctagtt 37171816  T

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