View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1596_low_29 (Length: 431)
Name: NF1596_low_29
Description: NF1596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1596_low_29 |
 | |
|
| [»] scaffold0373 (1 HSPs) |
| |
|
| [»] scaffold0294 (1 HSPs) |
| | |
|
| [»] scaffold0729 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 23)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 9 - 360
Target Start/End: Complemental strand, 6756561 - 6756210
Alignment:
| Q |
9 |
gacatcatcaagcactagaagtaccctattctgggccagtctttgcttcaatatatttttccctgattctatgtcacgtatcttgaatgtcgttgtttcg |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6756561 |
gacatcatcaagcactagaagtaccctattctgggccagtctttgcttcaatatatttttccctgattctatgtcacgtatcttgaatgtcgttgtttcg |
6756462 |
T |
|
| Q |
109 |
taaacatccgaaagtacctgttgttgtagtgaaacttgattagtatctgtctcccaaaactctcttatattcagaaggaagcttcttccctcaaattttc |
208 |
Q |
| |
|
||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
6756461 |
taagcatcgcagagtacctgttgttgtagtgaaacttgattagtatctgtctcccaaaactctcttatattcagaaggaagctccttccctcaaattttc |
6756362 |
T |
|
| Q |
209 |
ttccaatttcattataaatggctttggcaatggttgttttacccataccccccattccccatatccc---cagaattataacatcttctgatttttggat |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
6756361 |
ttccaatttcattataaatggctttggcaatggttgttttacccataccccccattccccatatccccagcagaattataaca---tctgatttttggat |
6756265 |
T |
|
| Q |
306 |
gtttaatagagtagttgcagcttctactcgagattctacacccactggatgttga |
360 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6756264 |
gtttaagagagtagttgcagcttctactcgagattctacacccactggatgttga |
6756210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 10 - 416
Target Start/End: Complemental strand, 6750942 - 6750536
Alignment:
| Q |
10 |
acatcatcaagcactagaagtaccctattctgggccagtctttgcttcaatatatttttccctgattctatgtcacgtatcttgaatgtcgttgtttcgt |
109 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||| || |
|
|
| T |
6750942 |
acatcatcaagcacaagaagtaccctattctgggcaagtctttgcttcaatatgtttttccctgattctatgtcacgtatcttgaattttgttgttttgt |
6750843 |
T |
|
| Q |
110 |
aaacatccgaaagtacctgttgttgtagtgaaacttgattagtatctgtctcccaaaactctcttatattcagaaggaagcttcttccctcaaattttct |
209 |
Q |
| |
|
||||||| | ||||| ||||| |||||||||||||||||||||| |||||||||||| || ||||||| || ||||||||| |||||||||||||| || |
|
|
| T |
6750842 |
aaacatcacagagtacttgttgctgtagtgaaacttgattagtatgtgtctcccaaaattcccttatatccataaggaagctccttccctcaaatttgct |
6750743 |
T |
|
| Q |
210 |
tccaatttcattataaatggctttggcaatggttgttttacccataccccccattccccatatccccagaattataacatcttctgatttttggatgttt |
309 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| || || | ||||||||||||||||||||||| |
|
|
| T |
6750742 |
cccaatttcattgtaaatggctttggcaatggttgttttacccgtaccccccattccccatatccctagcataaacacatcttctgatttttggatgtta |
6750643 |
T |
|
| Q |
310 |
aatagagtagttgcagcttctactcgagattctacacccactggatgttgagcaacgaataactctgtcctagcttgcaaacgggtgacatgttgaacaa |
409 |
Q |
| |
|
| || |||| |||||||| || ||||||||||||||||| ||||||| |||||| ||||||||||||||| || ||||||| ||||||||| ||||| |
|
|
| T |
6750642 |
aggagcttagtcgcagcttccacacgagattctacacccaccggatgttcagcaacaaataactctgtcctatctaacaaacggatgacatgttcaacaa |
6750543 |
T |
|
| Q |
410 |
tattctt |
416 |
Q |
| |
|
||||||| |
|
|
| T |
6750542 |
tattctt |
6750536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 10 - 431
Target Start/End: Original strand, 6589909 - 6590330
Alignment:
| Q |
10 |
acatcatcaagcactagaagtaccctattctgggccagtctttgcttcaatatatttttccctgattctatgtcacgtatcttgaatgtcgttgtttcgt |
109 |
Q |
| |
|
|||||||||| ||| ||||| ||||||||||||| ||| ||| |||||| |||||||| |||||||||| |||||||||||||||||| ||||| || |
|
|
| T |
6589909 |
acatcatcaaacacaagaagaaccctattctgggaaagtttttccttcaacatatttttgcctgattctagatcacgtatcttgaatgtcaatgttttgt |
6590008 |
T |
|
| Q |
110 |
aaacatccgaaagtacctgttgttgtagtgaaacttgattagtatctgtctcccaaaactctcttatattcagaaggaagcttcttccctcaaattttct |
209 |
Q |
| |
|
||||||| ||||| || ||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||| || |
|
|
| T |
6590009 |
aaacatcatcaagtatcttttgctgtagagaaacttgattagtatctgtctcccataactctcttatattcagaagaaagctccttccctcaaatttgct |
6590108 |
T |
|
| Q |
210 |
tccaatttcattataaatggctttggcaatggttgttttacccataccccccattccccatatccccagaattataacatcttctgatttttggatgttt |
309 |
Q |
| |
|
||||||| ||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||| ||||| |||||| ||||| |||||||||||| |
|
|
| T |
6590109 |
cccaatttgattataaattgctttggcaagggttgttttccccataccccccattccccatatccccaaaattaaaacatcatctgagttttggatgttt |
6590208 |
T |
|
| Q |
310 |
aatagagtagttgcagcttctactcgagattctacacccactggatgttgagcaacgaataactctgtcctagcttgcaaacgggtgacatgttgaacaa |
409 |
Q |
| |
|
| ||| |||| ||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||| |||| ||||| |
|
|
| T |
6590209 |
agtagcttagtcacagcttccacacgagattctacacccactggatgttcagcaacgaataactctgtcctatctaacaaacgggtgatgtgttcaacaa |
6590308 |
T |
|
| Q |
410 |
tattcttgatatcagcactttc |
431 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
6590309 |
tattcttgatatcagcactttc |
6590330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 10 - 431
Target Start/End: Complemental strand, 6813869 - 6813448
Alignment:
| Q |
10 |
acatcatcaagcactagaagtaccctattctgggccagtctttgcttcaatatatttttccctgattctatgtcacgtatcttgaatgtcgttgtttcgt |
109 |
Q |
| |
|
|||||||||||||| ||||||||| | ||||||| ||||||| |||||||||||||||||||||||| |||||| |||||||||||| |||||||| | |
|
|
| T |
6813869 |
acatcatcaagcacaagaagtaccttcttctgggaaagtctttccttcaatatatttttccctgattcgatgtcatgtatcttgaatgccgttgttttgc |
6813770 |
T |
|
| Q |
110 |
aaacatccgaaagtacctgttgttgtagtgaaacttgattagtatctgtctcccaaaactctcttatattcagaaggaagcttcttccctcaaattttct |
209 |
Q |
| |
|
||||||| |||||| ||||| ||||| |||||||||||||||||||||||||||| || || || |||||||| ||||| |||||||||||||| || |
|
|
| T |
6813769 |
aaacatcacaaagtatttgttgctgtagagaaacttgattagtatctgtctcccaaagttccctaatgttcagaagaaagctccttccctcaaatttgct |
6813670 |
T |
|
| Q |
210 |
tccaatttcattataaatggctttggcaatggttgttttacccataccccccattccccatatccccagaattataacatcttctgatttttggatgttt |
309 |
Q |
| |
|
||||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |||| || |||||||||||| |||| ||||||| |
|
|
| T |
6813669 |
cccaatttgattataaattgctttggcaagggttgttttacccataccccccattccccatatccctagaagtaaaacatcttctgagttttcgatgttt |
6813570 |
T |
|
| Q |
310 |
aatagagtagttgcagcttctactcgagattctacacccactggatgttgagcaacgaataactctgtcctagcttgcaaacgggtgacatgttgaacaa |
409 |
Q |
| |
|
| ||| |||| ||| ||| || ||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||||||| ||||| |
|
|
| T |
6813569 |
agtagtttagtcacagtttccacgcgagattctacacccactggatgttcagcaacgaataactctgtcctatctaacaaacgggtgacatgttcaacaa |
6813470 |
T |
|
| Q |
410 |
tattcttgatatcagcactttc |
431 |
Q |
| |
|
||||||||| |||| ||||||| |
|
|
| T |
6813469 |
tattcttgacatcatcactttc |
6813448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 10 - 431
Target Start/End: Original strand, 6535524 - 6535945
Alignment:
| Q |
10 |
acatcatcaagcactagaagtaccctattctgggccagtctttgcttcaatatatttttccctgattctatgtcacgtatcttgaatgtcgttgtttcgt |
109 |
Q |
| |
|
||||||||||| || | || |||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| || |
|
|
| T |
6535524 |
acatcatcaagtacaaaaaatacccttttctgggaaagtctttgcttcaatatatttttccctgattcaatgtcacgtatcttgaatgaagttgttttgt |
6535623 |
T |
|
| Q |
110 |
aaacatccgaaagtacctgttgttgtagtgaaacttgattagtatctgtctcccaaaactctcttatattcagaaggaagcttcttccctcaaattttct |
209 |
Q |
| |
|
||||||| ||||||| ||||| ||||||||||||||||||||| ||||||||||||| || |||||||||||||||||||| |||| ||||| || || |
|
|
| T |
6535624 |
aaacatcacaaagtacttgttgctgtagtgaaacttgattagtacctgtctcccaaaattcccttatattcagaaggaagctctttccatcaaacttgct |
6535723 |
T |
|
| Q |
210 |
tccaatttcattataaatggctttggcaatggttgttttacccataccccccattccccatatccccagaattataacatcttctgatttttggatgttt |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||| || |||||||||| |||||||||||| |
|
|
| T |
6535724 |
accaatttcattataaatggctttggcaatggttgttttgcctataccccccattccccatatccctagaagtaagacatcttctgcgttttggatgttt |
6535823 |
T |
|
| Q |
310 |
aatagagtagttgcagcttctactcgagattctacacccactggatgttgagcaacgaataactctgtcctagcttgcaaacgggtgacatgttgaacaa |
409 |
Q |
| |
|
||||| |||||||||||| || |||||||| | ||||||||||||| |||||| ||||||||| ||||| || ||||||| || ||||||| ||||| |
|
|
| T |
6535824 |
aatagcttagttgcagcttgcacacgagattcaattcccactggatgttcagcaacaaataactctttcctatctagcaaacgagtaacatgttcaacaa |
6535923 |
T |
|
| Q |
410 |
tattcttgatatcagcactttc |
431 |
Q |
| |
|
||||||||||||| ||||||| |
|
|
| T |
6535924 |
cattcttgatatcatcactttc |
6535945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 10 - 431
Target Start/End: Original strand, 6500220 - 6500641
Alignment:
| Q |
10 |
acatcatcaagcactagaagtaccctattctgggccagtctttgcttcaatatatttttccctgattctatgtcacgtatcttgaatgtcgttgtttcgt |
109 |
Q |
| |
|
|||||||||||||| | ||||||| | ||||| | ||||||||| ||||||| ||||||||||||||||||||||||||||||||| | ||||||| || |
|
|
| T |
6500220 |
acatcatcaagcacaaaaagtacctttttctgagaaagtctttgcctcaatatgtttttccctgattctatgtcacgtatcttgaattttgttgttttgt |
6500319 |
T |
|
| Q |
110 |
aaacatccgaaagtacctgttgttgtagtgaaacttgattagtatctgtctcccaaaactctcttatattcagaaggaagcttcttccctcaaattttct |
209 |
Q |
| |
|
||||||| |||| |||| ||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| || |||||||||| || |
|
|
| T |
6500320 |
aaacatcacaaagcaccttttgctgtagtgaaacttgattagtatctgtttcccaaaactcccttatattcagaaggaagctcctaccctcaaattcgct |
6500419 |
T |
|
| Q |
210 |
tccaatttcattataaatggctttggcaatggttgttttacccataccccccattccccatatccccagaattataacatcttctgatttttggatgttt |
309 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| || ||| |||||||||||||||||||||| ||||||| ||||||| || |||| |||||| |
|
|
| T |
6500420 |
cccaatttgattataaatggctttggcaatggttgtcttgcccgtaccccccattccccatatccctagaattaagacatcttttgtgttttttatgttt |
6500519 |
T |
|
| Q |
310 |
aatagagtagttgcagcttctactcgagattctacacccactggatgttgagcaacgaataactctgtcctagcttgcaaacgggtgacatgttgaacaa |
409 |
Q |
| |
|
| || |||| |||||||| || |||||||||| |||||||||||||| |||||| ||||||||||||||| || ||||||||||||| ||||||||| |
|
|
| T |
6500520 |
agcagcttagtcgcagcttccacacgagattctaaacccactggatgttcagcaacaaataactctgtcctatctagcaaacgggtgacgcgttgaacaa |
6500619 |
T |
|
| Q |
410 |
tattcttgatatcagcactttc |
431 |
Q |
| |
|
||||||||||||| ||||||| |
|
|
| T |
6500620 |
tattcttgatatcttcactttc |
6500641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 10 - 429
Target Start/End: Complemental strand, 6672750 - 6672331
Alignment:
| Q |
10 |
acatcatcaagcactagaagtaccctattctgggccagtctttgcttcaatatatttttccctgattctatgtcacgtatcttgaatgtcgttgtttcgt |
109 |
Q |
| |
|
|||||||||||||| ||||||||| | ||||||| ||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||| || |
|
|
| T |
6672750 |
acatcatcaagcacaagaagtaccttgctctgggcaagtctttccttcagtatatttttccttgattctatgtcacgtatcttgaatgtcgttgttttgt |
6672651 |
T |
|
| Q |
110 |
aaacatccgaaagtacctgttgttgtagtgaaacttgattagtatctgtctcccaaaactctcttatattcagaaggaagcttcttccctcaaattttct |
209 |
Q |
| |
|
| ||||| ||||||||||||| ||||| |||||| ||||| || |||||||||||| || |||||| ||||||||||||| |||||||||||||| || |
|
|
| T |
6672650 |
agacatcacaaagtacctgttgctgtagagaaactagattaatacatgtctcccaaaattcccttataatcagaaggaagctccttccctcaaatttgct |
6672551 |
T |
|
| Q |
210 |
tccaatttcattataaatggctttggcaatggttgttttacccataccccccattccccatatccccagaattataacatcttctgatttttggatgttt |
309 |
Q |
| |
|
||||||| ||| |||||||||||||||||| |||| || |||||||||||||||||||||||||| |||| || |||||||||||| || |||||||| |
|
|
| T |
6672550 |
cccaatttgattgtaaatggctttggcaatgtttgtcttgcccataccccccattccccatatccctagaagtaaaacatcttctgaattctggatgtta |
6672451 |
T |
|
| Q |
310 |
aatagagtagttgcagcttctactcgagattctacacccactggatgttgagcaacgaataactctgtcctagcttgcaaacgggtgacatgttgaacaa |
409 |
Q |
| |
|
| ||| |||| | |||||| || | ||||||||||||||| ||||||| || |||||||||||||||| || || | |||||||||||| ||| ||||| |
|
|
| T |
6672450 |
agtagcttagtggaagcttccacacaagattctacacccaccggatgttcagtaacgaataactctgtcttatctaggaaacgggtgacacgttcaacaa |
6672351 |
T |
|
| Q |
410 |
tattcttgatatcagcactt |
429 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
6672350 |
tattcttgatatcagcactt |
6672331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 10 - 431
Target Start/End: Complemental strand, 6649150 - 6648729
Alignment:
| Q |
10 |
acatcatcaagcactagaagtaccctattctgggccagtctttgcttcaatatatttttccctgattctatgtcacgtatcttgaatgtcgttgtttcgt |
109 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||| || |
|
|
| T |
6649150 |
acatcatcaagcacaataagtaccctattctgggaaagtctttctttcaatgtatttttccctgattctatgtcacgtatcttgaatgtcgtagttttgt |
6649051 |
T |
|
| Q |
110 |
aaacatccgaaagtacctgttgttgtagtgaaacttgattagtatctgtctcccaaaactctcttatattcagaaggaagcttcttccctcaaattttct |
209 |
Q |
| |
|
||||||| |||| | ||||||||||| |||||| ||||| ||| |||||||||||| ||||||||||||||||||||||| || ||||||||||| | |
|
|
| T |
6649050 |
aaacatcacaaagaagttgttgttgtagagaaactagattaatatttgtctcccaaaattctcttatattcagaaggaagctcctcccctcaaatttgtt |
6648951 |
T |
|
| Q |
210 |
tccaatttcattataaatggctttggcaatggttgttttacccataccccccattccccatatccccagaattataacatcttctgatttttggatgttt |
309 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||||| || | |||||||||||||| ||||| |||| | |||||||||||| | |||||||||| |
|
|
| T |
6648950 |
cccaatttgattataaatggctttggcaatggtagtttttccagttccccccattccccagatcccaagaagtgaaacatcttctgaatattggatgttt |
6648851 |
T |
|
| Q |
310 |
aatagagtagttgcagcttctactcgagattctacacccactggatgttgagcaacgaataactctgtcctagcttgcaaacgggtgacatgttgaacaa |
409 |
Q |
| |
|
| ||| ||||||||||||| || |||| || ||||||||||||||||| ||||| ||||||||||||||| || ||||| |||||| ||||| ||||| |
|
|
| T |
6648850 |
agtagcttagttgcagcttccacacgaggttgtacacccactggatgttcggcaacaaataactctgtcctatctagcaaatgggtgatatgttcaacaa |
6648751 |
T |
|
| Q |
410 |
tattcttgatatcagcactttc |
431 |
Q |
| |
|
||||||||||||| |||||||| |
|
|
| T |
6648750 |
tattcttgatatctgcactttc |
6648729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 10 - 431
Target Start/End: Complemental strand, 6794539 - 6794118
Alignment:
| Q |
10 |
acatcatcaagcactagaagtaccctattctgggccagtctttgcttcaatatatttttccctgattctatgtcacgtatcttgaatgtcgttgtttcgt |
109 |
Q |
| |
|
|||||||||||||| ||||||| ||| |||||||| ||||||| ||||||||||||||||||||||||||| |||||||| ||||||||| || || || |
|
|
| T |
6794539 |
acatcatcaagcacaagaagtatccttttctgggcaagtctttccttcaatatatttttccctgattctatatcacgtattttgaatgtcagtgctttgt |
6794440 |
T |
|
| Q |
110 |
aaacatccgaaagtacctgttgttgtagtgaaacttgattagtatctgtctcccaaaactctcttatattcagaaggaagcttcttccctcaaattttct |
209 |
Q |
| |
|
||||||| ||||| |||||| ||||| |||||||||||||||||||| ||||||| || || || |||| ||||||||| |||||||||||||| || |
|
|
| T |
6794439 |
aaacatcatgaagtatctgttgctgtagagaaacttgattagtatctgtgtcccaaacttccctaatgttcaaaaggaagctccttccctcaaatttgct |
6794340 |
T |
|
| Q |
210 |
tccaatttcattataaatggctttggcaatggttgttttacccataccccccattccccatatccccagaattataacatcttctgatttttggatgttt |
309 |
Q |
| |
|
||||||| ||||| ||||||||| |||| ||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||| |||| ||||||| |
|
|
| T |
6794339 |
cccaatttgattatgaatggctttagcaagggttgtttttcccataccccccattccccatatccctagaattaatacatcttctgagtttttgatgttt |
6794240 |
T |
|
| Q |
310 |
aatagagtagttgcagcttctactcgagattctacacccactggatgttgagcaacgaataactctgtcctagcttgcaaacgggtgacatgttgaacaa |
409 |
Q |
| |
|
| || |||| ||| |||| || |||||||||| |||||||||||||| |||||| ||||||||||||||| | |||||| ||||||||||| ||||| |
|
|
| T |
6794239 |
agcagcttagtcgcaacttccacacgagattctaaacccactggatgttcagcaacaaataactctgtcctaccaagcaaaccggtgacatgttcaacaa |
6794140 |
T |
|
| Q |
410 |
tattcttgatatcagcactttc |
431 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
6794139 |
tattcttgatatcagcactttc |
6794118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 10 - 428
Target Start/End: Original strand, 6624301 - 6624719
Alignment:
| Q |
10 |
acatcatcaagcactagaagtaccctattctgggccagtctttgcttcaatatatttttccctgattctatgtcacgtatcttgaatgtcgttgtttcgt |
109 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||| || || ||||||||||||| |||||||| || |
|
|
| T |
6624301 |
acatcatcaagcacaagaagtaccctattctgggcaagtctttccttcaatatatttttccctgattcgatatcgcgtatcttgaatgccgttgttttgt |
6624400 |
T |
|
| Q |
110 |
aaacatccgaaagtacctgttgttgtagtgaaacttgattagtatctgtctcccaaaactctcttatattcagaaggaagcttcttccctcaaattttct |
209 |
Q |
| |
|
||||||| |||||| |||||||| || ||||| ||||| | ||||||||| ||||| ||||||||||||| ||| ||||| | ||| || |||||||| |
|
|
| T |
6624401 |
aaacatcacaaagtatttgttgttgcagagaaacatgattggcatctgtctcgcaaaattctcttatattcaaaagaaagctccgtccatcgaattttct |
6624500 |
T |
|
| Q |
210 |
tccaatttcattataaatggctttggcaatggttgttttacccataccccccattccccatatccccagaattataacatcttctgatttttggatgttt |
309 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||||| || | || || ||||||||| || |||||||| || |
|
|
| T |
6624501 |
cccaatttgattataaatcgctttggcaatggttgttttacccacaccccccattccccatattcctaaaagtaaaacatcttcggagttttggatattg |
6624600 |
T |
|
| Q |
310 |
aatagagtagttgcagcttctactcgagattctacacccactggatgttgagcaacgaataactctgtcctagcttgcaaacgggtgacatgttgaacaa |
409 |
Q |
| |
|
| ||| |||| |||| || || ||||||||||||||||||||||||| |||||||||||| ||||||||| || |||||||||| || |||| ||||| |
|
|
| T |
6624601 |
agtagcttagtcacagcatccacacgagattctacacccactggatgttcagcaacgaataattctgtcctatctagcaaacgggtcacgtgtttaacaa |
6624700 |
T |
|
| Q |
410 |
tattcttgatatcagcact |
428 |
Q |
| |
|
||||||||||||| ||||| |
|
|
| T |
6624701 |
tattcttgatatctgcact |
6624719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 10 - 416
Target Start/End: Complemental strand, 6726025 - 6725619
Alignment:
| Q |
10 |
acatcatcaagcactagaagtaccctattctgggccagtctttgcttcaatatatttttccctgattctatgtcacgtatcttgaatgtcgttgtttcgt |
109 |
Q |
| |
|
|||||||| ||||| |||||||| ||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| || |
|
|
| T |
6726025 |
acatcatctagcacaagaagtacactagtctgggaaagtctttccttcaatatatttttccctgattctatgtcacgtatcttgaatgttaatgttttgt |
6725926 |
T |
|
| Q |
110 |
aaacatccgaaagtacctgttgttgtagtgaaacttgattagtatctgtctcccaaaactctcttatattcagaaggaagcttcttccctcaaattttct |
209 |
Q |
| |
|
||||||| ||||||||| ||| ||||| |||||| |||| |||| |||||||||||| || || ||||| |||| ||||| |||||||||||||| || |
|
|
| T |
6725925 |
aaacatcacaaagtaccttttgctgtagagaaactagattggtatttgtctcccaaaattccctgatatttagaacaaagctccttccctcaaatttgct |
6725826 |
T |
|
| Q |
210 |
tccaatttcattataaatggctttggcaatggttgttttacccataccccccattccccatatccccagaattataacatcttctgatttttggatgttt |
309 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||||||||| |||||||||| ||||| ||||| |||| || |||||||||||||||||||||||| |
|
|
| T |
6725825 |
accaatttgattataaatggctttggcaagggttgttttacccgtaccccccataccccaaatccctagaagtaaaacatcttctgatttttggatgttc |
6725726 |
T |
|
| Q |
310 |
aatagagtagttgcagcttctactcgagattctacacccactggatgttgagcaacgaataactctgtcctagcttgcaaacgggtgacatgttgaacaa |
409 |
Q |
| |
|
||||| |||||||||||| || ||| |||||| || |||||||||| |||||||||||||||||||||| | ||||||| ||||||| || ||||| |
|
|
| T |
6725725 |
aatagcttagttgcagcttgcacacgatgttctactcctactggatgttcagcaacgaataactctgtcctatccagcaaacgagtgacatattcaacaa |
6725626 |
T |
|
| Q |
410 |
tattctt |
416 |
Q |
| |
|
||||||| |
|
|
| T |
6725625 |
tattctt |
6725619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 10 - 431
Target Start/End: Complemental strand, 6834269 - 6833851
Alignment:
| Q |
10 |
acatcatcaagcactagaagtaccctattctgggccagtctttgcttcaatatatttttccctgattctatgtcacgtatcttgaatgtcgttgtttcgt |
109 |
Q |
| |
|
|||||||||||||| | ||| ||||| ||||| || |||||||||||||||||| ||||||||||||| |||||| |||||||| |||| ||||||| || |
|
|
| T |
6834269 |
acatcatcaagcacaaaaagcacccttttctgagcaagtctttgcttcaatataattttccctgattcgatgtcatgtatcttggatgttgttgttttgt |
6834170 |
T |
|
| Q |
110 |
aaacatccgaaagtacctgttgttgtagtgaaacttgattagtatctgtctcccaaaactctcttatattcagaaggaagcttcttccctcaaattttct |
209 |
Q |
| |
|
||||||| ||||||||||||| || ||||||||| ||||||||| ||||||||| || || | || | || ||||||||| ||||||||||||| || |
|
|
| T |
6834169 |
aaacatcacaaagtacctgttgctgcagtgaaactagattagtatgtgtctcccagaattcccgtacacccaaaaggaagctcattccctcaaatttgct |
6834070 |
T |
|
| Q |
210 |
tccaatttcattataaatggctttggcaatggttgttttacccataccccccattccccatatccccagaattataacatcttctgatttttggatgttt |
309 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| || |||| |||||||||| |||||| |
|
|
| T |
6834069 |
cccaatttgattataaatggctttggcaatggttgttttacctgtaccccccattccccatatcccaagaagtaaaaca---tctgatttttttatgttt |
6833973 |
T |
|
| Q |
310 |
aatagagtagttgcagcttctactcgagattctacacccactggatgttgagcaacgaataactctgtcctagcttgcaaacgggtgacatgttgaacaa |
409 |
Q |
| |
|
||||| || | ||| || || |||||||||| |||||||||||||| |||||| ||||||| ||||||| | ||||| | |||||| ||| ||||| |
|
|
| T |
6833972 |
aatagcttaatcacagtgtccacacgagattctaaacccactggatgttcagcaacaaataactttgtcctatcaagcaaatgtgtgacacgttcaacaa |
6833873 |
T |
|
| Q |
410 |
tattcttgatatcagcactttc |
431 |
Q |
| |
|
| || ||||||||||||||||| |
|
|
| T |
6833872 |
tgtttttgatatcagcactttc |
6833851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 10 - 431
Target Start/End: Original strand, 6547775 - 6548187
Alignment:
| Q |
10 |
acatcatcaagcactagaagtaccctattctgggccagtctttgcttcaatatatttttccctgattctatgtcacgtatcttgaatgtcgttgtttcgt |
109 |
Q |
| |
|
|||||||||||||||| ||| || ||||| | || ||||||| ||| ||| |||||||||||||||| ||||||||||||||||||| ||||||| || |
|
|
| T |
6547775 |
acatcatcaagcactaaaagcactctattatcggagagtctttcctttaatgtatttttccctgattcaatgtcacgtatcttgaatgaagttgttttgt |
6547874 |
T |
|
| Q |
110 |
aaacatccgaaagtacctgttgttgtagtgaaacttgattagtatctgtctcccaaaactctcttatattcagaaggaagcttcttccctcaaattttct |
209 |
Q |
| |
|
||||||| ||||||| ||||| ||||||||||||||||||||| ||||||||||||| || |||||||||||||||||||| |||| ||||| || || |
|
|
| T |
6547875 |
aaacatcacaaagtacttgttgctgtagtgaaacttgattagtacctgtctcccaaaattcccttatattcagaaggaagctctttccgtcaaacttgct |
6547974 |
T |
|
| Q |
210 |
tccaatttcattataaatggctttggcaatggttgttttacccataccccccattccccatatccccagaattataacatcttctgatttttggatgttt |
309 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||| | || || |||||||||||| |||||||| ||| |
|
|
| T |
6547975 |
accaatttcattataaatggatttggctatggttgtttt---------gcccattccccatatccctaaaagtaaaacatcttctgacttttggatcttt |
6548065 |
T |
|
| Q |
310 |
aatagagtagttgcagcttctactcgagattctacacccactggatgttgagcaacgaataactctgtcctagcttgcaaacgggtgacatgttgaacaa |
409 |
Q |
| |
|
||||| | |||||||||| || ||||||||||| ||||||||||||| ||||| ||||||| ||||||| || ||||||| || ||||| ||||| |
|
|
| T |
6548066 |
aatagcttggttgcagcttgcacacgagattctactcccactggatgttcggcaacaaataactgtgtcctatctagcaaacgagtaacatgactaacaa |
6548165 |
T |
|
| Q |
410 |
tattcttgatatcagcactttc |
431 |
Q |
| |
|
|| | |||| |||||||||||| |
|
|
| T |
6548166 |
tactgttgacatcagcactttc |
6548187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 10 - 431
Target Start/End: Complemental strand, 6713906 - 6713485
Alignment:
| Q |
10 |
acatcatcaagcactagaagtaccctattctgggccagtctttgcttcaatatatttttccctgattctatgtcacgtatcttgaatgtcgttgtttcgt |
109 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||| || ||||||| |||||||| ||||||||||||||| |||||| ||||||||| | ||||||| || |
|
|
| T |
6713906 |
acatcatcaagcacaagaagtacccttttctgagcaagtctttccttcaataaatttttccctgattcaatgtcaagtatcttgagttctgttgttttgt |
6713807 |
T |
|
| Q |
110 |
aaacatccgaaagtacctgttgttgtagtgaaacttgattagtatctgtctcccaaaactctcttatattcagaaggaagcttcttccctcaaattttct |
209 |
Q |
| |
|
||||||| |||||| ||||| ||||| |||||||||||||||||||||||||||| || || || || ||||| ||||| |||||||||||||| | |
|
|
| T |
6713806 |
aaacatcacaaagtatttgttgctgtagagaaacttgattagtatctgtctcccaaacttccctaatgtttagaagaaagctccttccctcaaatttgat |
6713707 |
T |
|
| Q |
210 |
tccaatttcattataaatggctttggcaatggttgttttacccataccccccattccccatatccccagaattataacatcttctgatttttggatgttt |
309 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||||| |||| |||||||||||||| ||||| | || || |||||| | ||| |||||||| ||| |
|
|
| T |
6713706 |
accaatttgattataaatggctttggcaagggttgttttgcccaagccccccattccccagatccctaaaagtaaaacatcatttgaattttggatattt |
6713607 |
T |
|
| Q |
310 |
aatagagtagttgcagcttctactcgagattctacacccactggatgttgagcaacgaataactctgtcctagcttgcaaacgggtgacatgttgaacaa |
409 |
Q |
| |
|
| || | |||| || |||| ||||||||| ||||| ||||||| || | |||| ||||| |||||| || || |||||||||||||||||| ||| | |
|
|
| T |
6713606 |
agtaaattagtcacatcttccactcgagatctgacaccgactggatattcaacaacaaataagtctgtcttatctagcaaacgggtgacatgttcaacta |
6713507 |
T |
|
| Q |
410 |
tattcttgatatcagcactttc |
431 |
Q |
| |
|
||||||||||||| |||||||| |
|
|
| T |
6713506 |
tattcttgatatctgcactttc |
6713485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 27 - 238
Target Start/End: Complemental strand, 8412941 - 8412730
Alignment:
| Q |
27 |
aagtaccctattctgggccagtctttgcttcaatatatttttccctgattctatgtcacgtatcttgaatgtcgttgtttcgtaaacatccgaaagtacc |
126 |
Q |
| |
|
|||||||||| ||||||| ||||||| ||||| |||| ||||||||||| |||||||| |||||||| ||||| ||||| ||||| ||| |||||||| |
|
|
| T |
8412941 |
aagtaccctagtctgggcaagtctttccttcagtatacttttccctgatactatgtcatgtatcttgtatgtcaatgttttgtaaaaatcacaaagtacc |
8412842 |
T |
|
| Q |
127 |
tgttgttgtagtgaaacttgattagtatctgtctcccaaaactctcttatattcagaaggaagcttcttccctcaaattttcttccaatttcattataaa |
226 |
Q |
| |
|
|||| ||||| |||||| ||||||||| | |||||||||| || |||||||| |||| ||||| |||||||||||||||| ||||||| |||||||| |
|
|
| T |
8412841 |
agttgctgtagagaaactagattagtatttttctcccaaaattcccttatatttagaacgaagcactttccctcaaattttctaccaatttgattataaa |
8412742 |
T |
|
| Q |
227 |
tggctttggcaa |
238 |
Q |
| |
|
|||||||||||| |
|
|
| T |
8412741 |
tggctttggcaa |
8412730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 285 - 411
Target Start/End: Complemental strand, 8412711 - 8412585
Alignment:
| Q |
285 |
aacatcttctgatttttggatgtttaatagagtagttgcagcttctactcgagattctacacccactggatgttgagcaacgaataactctgtcctagct |
384 |
Q |
| |
|
|||||||||||| ||||| ||||||| ||| ||| ||| || ||| |||||||||||||| |||||||||| |||||| ||||||||||| ||| || |
|
|
| T |
8412711 |
aacatcttctgaattttgcatgtttagtagctcagtcacagattttacacgagattctacaccgactggatgttcagcaacaaataactctgtgctatct |
8412612 |
T |
|
| Q |
385 |
tgcaaacgggtgacatgttgaacaata |
411 |
Q |
| |
|
|||||||||||| || || ||||||| |
|
|
| T |
8412611 |
agcaaacgggtgatatattaaacaata |
8412585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 303
Target Start/End: Complemental strand, 25567919 - 25567827
Alignment:
| Q |
211 |
ccaatttcattataaatggctttggcaatggttgttttacccataccccccattccccatatccccagaattataacatcttctgatttttgg |
303 |
Q |
| |
|
||||||| ||| ||||||||||| |||||||| ||||| || || || ||||| ||||| ||||| |||| || |||||||| ||||| |||| |
|
|
| T |
25567919 |
ccaattttattgtaaatggcttttgcaatggtggttttgccaatccctcccataccccacatccctagaagtagaacatcttttgattcttgg |
25567827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 278
Target Start/End: Original strand, 4126523 - 4126590
Alignment:
| Q |
211 |
ccaatttcattataaatggctttggcaatggttgttttacccataccccccattccccatatccccag |
278 |
Q |
| |
|
||||||| ||| ||||||||||| |||||||| |||||||| || || ||||| ||||| |||||||| |
|
|
| T |
4126523 |
ccaattttattgtaaatggcttttgcaatggtggttttaccaattccacccatcccccacatccccag |
4126590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 377
Target Start/End: Complemental strand, 6755833 - 6755803
Alignment:
| Q |
347 |
ccactggatgttgagcaacgaataactctgt |
377 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
6755833 |
ccactggatgttgagcaacgaataactctgt |
6755803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 275
Target Start/End: Complemental strand, 4342858 - 4342794
Alignment:
| Q |
211 |
ccaatttcattataaatggctttggcaatggttgttttacccataccccccattccccatatccc |
275 |
Q |
| |
|
||||||| ||| ||||||||||| |||||||| ||||| ||||| || ||||| ||||| ||||| |
|
|
| T |
4342858 |
ccaattttattgtaaatggcttttgcaatggtggttttccccattccacccatcccccacatccc |
4342794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 251
Target Start/End: Original strand, 6550700 - 6550740
Alignment:
| Q |
211 |
ccaatttcattataaatggctttggcaatggttgttttacc |
251 |
Q |
| |
|
||||||| || ||||||||||| |||||||||||||||||| |
|
|
| T |
6550700 |
ccaatttgatgataaatggcttgggcaatggttgttttacc |
6550740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 219 - 275
Target Start/End: Complemental strand, 6646851 - 6646795
Alignment:
| Q |
219 |
attataaatggctttggcaatggttgttttacccataccccccattccccatatccc |
275 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||| || || |||| ||||||||||| |
|
|
| T |
6646851 |
attataaatggcttcggcaatggttgatttaccgatccctgccatcccccatatccc |
6646795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 275
Target Start/End: Complemental strand, 6792180 - 6792116
Alignment:
| Q |
211 |
ccaatttcattataaatggctttggcaatggttgttttacccataccccccattccccatatccc |
275 |
Q |
| |
|
||||||| || ||||||||||||||||||||||| |||||| || || ||| ||||||||||| |
|
|
| T |
6792180 |
ccaatttgatcataaatggctttggcaatggttgatttaccaatccctgtcatcccccatatccc |
6792116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0373 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: scaffold0373
Description:
Target: scaffold0373; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 10 - 431
Target Start/End: Original strand, 11764 - 12186
Alignment:
| Q |
10 |
acatcatcaagcactagaagtaccctattctgggccagtctttgcttcaatatatttttccctgattctatgtcacgtatcttgaatgtcgttgtttcgt |
109 |
Q |
| |
|
|||||||||||||| ||||||| ||| |||||||| ||||||| ||||||||||||||||||||||||||| |||||||| ||||||||| || || || |
|
|
| T |
11764 |
acatcatcaagcacaagaagtatccttttctgggcaagtctttccttcaatatatttttccctgattctatatcacgtattttgaatgtcagtgctttgt |
11863 |
T |
|
| Q |
110 |
aaacatccgaaagtacctgttgttgtagtgaaacttgattagtatctgtctcccaaaact-ctcttatattcagaaggaagcttcttccctcaaattttc |
208 |
Q |
| |
|
||||||| ||||| |||||| |||| ||||||||||||||||||| |||| ||||| | || || |||| ||||||||| |||||||||||||| | |
|
|
| T |
11864 |
aaacatcatgaagtatctgttgctgtacacaaacttgattagtatctgtgtccccaaacttccctaatgttcaaaaggaagctccttccctcaaatttgc |
11963 |
T |
|
| Q |
209 |
ttccaatttcattataaatggctttggcaatggttgttttacccataccccccattccccatatccccagaattataacatcttctgatttttggatgtt |
308 |
Q |
| |
|
| ||||||| ||||| ||||||||| |||| ||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||| |||| |||||| |
|
|
| T |
11964 |
tcccaatttgattatgaatggctttagcaagggttgtttttcccataccccccattccccatatccctagaattaatacatcttctgagtttttgatgtt |
12063 |
T |
|
| Q |
309 |
taatagagtagttgcagcttctactcgagattctacacccactggatgttgagcaacgaataactctgtcctagcttgcaaacgggtgacatgttgaaca |
408 |
Q |
| |
|
|| || |||| ||| |||| || |||||||||| |||||||||||||| |||||| ||||||||||||||| | |||||| ||||||||||| |||| |
|
|
| T |
12064 |
tagcagcttagtcgcaacttccacacgagattctaaacccactggatgttcagcaacaaataactctgtcctaccaagcaaaccggtgacatgttcaaca |
12163 |
T |
|
| Q |
409 |
atattcttgatatcagcactttc |
431 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
12164 |
atattcttgatatcagcactttc |
12186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 13)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 183 - 278
Target Start/End: Complemental strand, 5368404 - 5368309
Alignment:
| Q |
183 |
aaggaagcttcttccctcaaattttcttccaatttcattataaatggctttggcaatggttgttttacccataccccccattccccatatccccag |
278 |
Q |
| |
|
|||||||||||| || ||||| || | ||||||| ||| ||||| ||||||||||||||||||||||| | |||||||| ||||| |||||||| |
|
|
| T |
5368404 |
aaggaagcttctaccttcaaaattgcggccaattttattgtaaatagctttggcaatggttgttttaccaactccccccataccccacatccccag |
5368309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 211 - 275
Target Start/End: Complemental strand, 5093957 - 5093893
Alignment:
| Q |
211 |
ccaatttcattataaatggctttggcaatggttgttttacccataccccccattccccatatccc |
275 |
Q |
| |
|
|||||||||||||| || ||||| ||||||||||||||||| || |||||||| ||||| ||||| |
|
|
| T |
5093957 |
ccaatttcattatagatagcttttgcaatggttgttttaccaatcccccccataccccacatccc |
5093893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 183 - 275
Target Start/End: Complemental strand, 5423697 - 5423605
Alignment:
| Q |
183 |
aaggaagcttcttccctcaaattttcttccaatttcattataaatggctttggcaatggttgttttacccataccccccattccccatatccc |
275 |
Q |
| |
|
|||||||||||| || ||||| || | ||||||| ||| ||||| ||||||||||||||||||||||| | |||||||| ||||| ||||| |
|
|
| T |
5423697 |
aaggaagcttctaccttcaaaattgcgaccaattttattgtaaatagctttggcaatggttgttttaccaactccccccataccccacatccc |
5423605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 211 - 290
Target Start/End: Original strand, 5133991 - 5134070
Alignment:
| Q |
211 |
ccaatttcattataaatggctttggcaatggttgttttacccataccccccattccccatatccccagaattataacatc |
290 |
Q |
| |
|
||||||| ||| ||||||||||| ||||||||||||||||| | || ||||| ||||| ||||| |||| ||||||||| |
|
|
| T |
5133991 |
ccaattttattgtaaatggctttcgcaatggttgttttaccaacgcctcccataccccacatccctagaagtataacatc |
5134070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 183 - 288
Target Start/End: Original strand, 5184010 - 5184115
Alignment:
| Q |
183 |
aaggaagcttcttccctcaaattttcttccaatttcattataaatggctttggcaatggttgttttacccataccccccattccccatatccccagaatt |
282 |
Q |
| |
|
||||||||| || |||||||| || | ||||||||||| ||||||| |||||| | ||||||||||| ||||| ||||| ||||| ||||| || | | |
|
|
| T |
5184010 |
aaggaagctcctaccctcaaaattgcgaccaatttcattgtaaatggatttggctaacgttgttttaccaatacctcccataccccagatccctagtagt |
5184109 |
T |
|
| Q |
283 |
ataaca |
288 |
Q |
| |
|
|||||| |
|
|
| T |
5184110 |
ataaca |
5184115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 275
Target Start/End: Original strand, 5159587 - 5159651
Alignment:
| Q |
211 |
ccaatttcattataaatggctttggcaatggttgttttacccataccccccattccccatatccc |
275 |
Q |
| |
|
|||||||||||||| || ||||| |||||||||||||| || || |||||||| ||||| ||||| |
|
|
| T |
5159587 |
ccaatttcattatagatagcttttgcaatggttgttttgccaatcccccccataccccacatccc |
5159651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 280
Target Start/End: Original strand, 5069129 - 5069226
Alignment:
| Q |
183 |
aaggaagcttcttccctcaaattttcttccaatttcattataaatggctttggcaatggttgttttacccataccccccattccccatatccccagaa |
280 |
Q |
| |
|
|||||||||||| || ||||| || | ||||||| ||| ||||| |||||||||||||| |||||||| | || ||||| ||||| ||||| |||| |
|
|
| T |
5069129 |
aaggaagcttctaccttcaaaattgcggccaattttattgtaaatagctttggcaatggtcgttttaccaactcctcccataccccacatccctagaa |
5069226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 275
Target Start/End: Complemental strand, 5431320 - 5431259
Alignment:
| Q |
214 |
atttcattataaatggctttggcaatggttgttttacccataccccccattccccatatccc |
275 |
Q |
| |
|
|||||||||||||| ||||| ||||| |||||||| || || |||||||| ||||| ||||| |
|
|
| T |
5431320 |
atttcattataaattgcttttgcaatagttgtttttccgattccccccataccccacatccc |
5431259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 275
Target Start/End: Original strand, 5075817 - 5075881
Alignment:
| Q |
211 |
ccaatttcattataaatggctttggcaatggttgttttacccataccccccattccccatatccc |
275 |
Q |
| |
|
||||||| ||| ||||||||||| |||||||| |||||||| || || ||||| ||||| ||||| |
|
|
| T |
5075817 |
ccaattttattgtaaatggcttttgcaatggtggttttaccaatcccacccataccccaaatccc |
5075881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 251
Target Start/End: Original strand, 5104958 - 5104998
Alignment:
| Q |
211 |
ccaatttcattataaatggctttggcaatggttgttttacc |
251 |
Q |
| |
|
||||||| ||| ||||| ||||||||||||||||||||||| |
|
|
| T |
5104958 |
ccaattttattgtaaatagctttggcaatggttgttttacc |
5104998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 183 - 275
Target Start/End: Original strand, 5262201 - 5262293
Alignment:
| Q |
183 |
aaggaagcttcttccctcaaattttcttccaatttcattataaatggctttggcaatggttgttttacccataccccccattccccatatccc |
275 |
Q |
| |
|
||||||||| ||||| ||||| || | ||||| | ||| ||||||||||| | |||||||||||| || || |||||||| ||||| ||||| |
|
|
| T |
5262201 |
aaggaagctccttccatcaaaattgcggccaatcttattgtaaatggctttcgtaatggttgttttgccaattccccccataccccacatccc |
5262293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 5348355 - 5348287
Alignment:
| Q |
183 |
aaggaagcttcttccctcaaattttcttccaatttcattataaatggctttggcaatggttgttttacc |
251 |
Q |
| |
|
|||||||||||| || ||||| || | ||||||| ||| ||||| |||||||||||||| |||||||| |
|
|
| T |
5348355 |
aaggaagcttctaccttcaaaattgcggccaattttattgtaaatagctttggcaatggtcgttttacc |
5348287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 183 - 275
Target Start/End: Original strand, 5692169 - 5692261
Alignment:
| Q |
183 |
aaggaagcttcttccctcaaattttcttccaatttcattataaatggctttggcaatggttgttttacccataccccccattccccatatccc |
275 |
Q |
| |
|
||||||||| ||||| ||||| || | ||||||| ||| ||||||||||| |||||||| ||||| || || || ||||| ||||| ||||| |
|
|
| T |
5692169 |
aaggaagctccttccttcaaaattgcggccaattttattgtaaatggcttttgcaatggtggttttgccaattcctcccatgccccacatccc |
5692261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 275
Target Start/End: Original strand, 10754 - 10815
Alignment:
| Q |
214 |
atttcattataaatggctttggcaatggttgttttacccataccccccattccccatatccc |
275 |
Q |
| |
|
||||| || ||||| ||||| ||||||||||||||||| || |||||||| ||||| ||||| |
|
|
| T |
10754 |
atttctttgtaaattgcttttgcaatggttgttttaccaattccccccataccccaaatccc |
10815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0729 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0729
Description:
Target: scaffold0729; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 275
Target Start/End: Original strand, 6449 - 6513
Alignment:
| Q |
211 |
ccaatttcattataaatggctttggcaatggttgttttacccataccccccattccccatatccc |
275 |
Q |
| |
|
||||||| || ||||||||||||||||||||||| |||||| || || ||| ||||||||||| |
|
|
| T |
6449 |
ccaatttgatcataaatggctttggcaatggttgatttaccaatccctgtcatcccccatatccc |
6513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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