View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1596_low_30 (Length: 430)

Name: NF1596_low_30
Description: NF1596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1596_low_30
NF1596_low_30
[»] chr6 (13 HSPs)
chr6 (13-237)||(11376761-11376985)
chr6 (13-236)||(27747801-27748024)
chr6 (241-415)||(11374858-11375032)
chr6 (241-415)||(27749767-27749941)
chr6 (17-225)||(8997823-8998031)
chr6 (17-225)||(9006992-9007200)
chr6 (241-399)||(8995902-8996060)
chr6 (241-399)||(9005085-9005243)
chr6 (161-235)||(16901314-16901388)
chr6 (161-235)||(18163433-18163507)
chr6 (161-235)||(24929064-24929138)
chr6 (161-235)||(31360187-31360261)
chr6 (161-237)||(29562786-29562862)
[»] scaffold0049 (3 HSPs)
scaffold0049 (13-237)||(17954-18178)
scaffold0049 (241-415)||(16053-16229)
scaffold0049 (161-225)||(85426-85490)
[»] scaffold0021 (2 HSPs)
scaffold0021 (13-236)||(166243-166466)
scaffold0021 (245-415)||(164329-164499)
[»] chr3 (14 HSPs)
chr3 (13-237)||(25508161-25508385)
chr3 (240-415)||(25510116-25510291)
chr3 (17-225)||(19687774-19687982)
chr3 (49-215)||(48981688-48981854)
chr3 (241-342)||(5151104-5151205)
chr3 (161-235)||(6425676-6425750)
chr3 (161-235)||(8976214-8976288)
chr3 (161-235)||(9540503-9540577)
chr3 (161-235)||(16404977-16405051)
chr3 (119-216)||(28361587-28361684)
chr3 (179-226)||(5147728-5147775)
chr3 (85-215)||(4363909-4364039)
chr3 (254-323)||(2156214-2156283)
chr3 (254-323)||(40092594-40092663)
[»] scaffold0349 (1 HSPs)
scaffold0349 (241-415)||(753-927)
[»] chr5 (14 HSPs)
chr5 (13-225)||(18710973-18711185)
chr5 (17-225)||(725299-725507)
chr5 (56-225)||(15327617-15327786)
chr5 (251-407)||(727280-727436)
chr5 (241-405)||(15329519-15329683)
chr5 (241-405)||(18709076-18709240)
chr5 (49-215)||(5603585-5603751)
chr5 (89-216)||(24415613-24415740)
chr5 (161-235)||(18383108-18383182)
chr5 (161-235)||(20951229-20951303)
chr5 (161-235)||(26199224-26199298)
chr5 (161-235)||(27415516-27415590)
chr5 (161-235)||(33942688-33942762)
chr5 (161-216)||(30451539-30451594)
[»] chr8 (7 HSPs)
chr8 (13-225)||(45496025-45496237)
chr8 (17-226)||(19753682-19753890)
chr8 (241-413)||(45497967-45498139)
chr8 (161-237)||(22834104-22834180)
chr8 (161-235)||(21209869-21209943)
chr8 (161-235)||(14888588-14888662)
chr8 (85-215)||(25048237-25048367)
[»] chr4 (12 HSPs)
chr4 (13-225)||(14935282-14935494)
chr4 (17-225)||(115125-115333)
chr4 (251-407)||(113196-113352)
chr4 (241-413)||(14933380-14933552)
chr4 (96-216)||(26815275-26815395)
chr4 (161-235)||(6695586-6695660)
chr4 (166-235)||(7843362-7843431)
chr4 (171-235)||(16268469-16268533)
chr4 (89-216)||(54696651-54696778)
chr4 (161-235)||(17154785-17154859)
chr4 (85-215)||(18127805-18127935)
chr4 (254-323)||(14531077-14531146)
[»] scaffold0096 (2 HSPs)
scaffold0096 (17-225)||(51992-52200)
scaffold0096 (251-407)||(50063-50219)
[»] chr7 (13 HSPs)
chr7 (18-225)||(609709-609916)
chr7 (251-407)||(607780-607936)
chr7 (161-235)||(5388814-5388888)
chr7 (161-235)||(8504417-8504491)
chr7 (161-235)||(9542139-9542213)
chr7 (161-235)||(26306924-26306998)
chr7 (161-235)||(26359820-26359894)
chr7 (161-235)||(32101748-32101822)
chr7 (161-235)||(44900667-44900741)
chr7 (161-235)||(46500482-46500556)
chr7 (119-216)||(15178520-15178617)
chr7 (161-226)||(16139083-16139148)
chr7 (161-214)||(6537866-6537919)
[»] scaffold0028 (3 HSPs)
scaffold0028 (17-225)||(84799-85007)
scaffold0028 (241-407)||(82869-83035)
scaffold0028 (89-216)||(101165-101292)
[»] chr1 (2 HSPs)
chr1 (240-412)||(24052483-24052655)
chr1 (161-235)||(16158251-16158325)
[»] scaffold0500 (2 HSPs)
scaffold0500 (20-225)||(8920-9125)
scaffold0500 (241-407)||(4902-5068)
[»] chr2 (8 HSPs)
chr2 (20-226)||(24992029-24992235)
chr2 (241-407)||(24990292-24990458)
chr2 (49-215)||(1793970-1794136)
chr2 (161-235)||(9510663-9510737)
chr2 (161-235)||(18654586-18654660)
chr2 (161-235)||(22905513-22905587)
chr2 (161-235)||(27166879-27166953)
chr2 (161-235)||(45017718-45017792)
[»] scaffold1922 (1 HSPs)
scaffold1922 (13-99)||(287-373)
[»] scaffold0142 (1 HSPs)
scaffold0142 (161-237)||(33800-33876)
[»] scaffold0141 (1 HSPs)
scaffold0141 (161-225)||(29322-29386)
[»] scaffold0254 (1 HSPs)
scaffold0254 (170-235)||(4477-4542)
[»] scaffold0611 (1 HSPs)
scaffold0611 (183-235)||(1362-1414)
[»] scaffold0313 (1 HSPs)
scaffold0313 (161-219)||(12941-12999)
[»] scaffold0058 (1 HSPs)
scaffold0058 (161-235)||(51482-51556)
[»] scaffold0003 (1 HSPs)
scaffold0003 (161-219)||(148396-148454)
[»] scaffold0163 (2 HSPs)
scaffold0163 (254-323)||(12303-12372)
scaffold0163 (254-323)||(16847-16916)


Alignment Details
Target: chr6 (Bit Score: 181; Significance: 1e-97; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 13 - 237
Target Start/End: Complemental strand, 11376985 - 11376761
Alignment:
Q  13 aaggggtctttttgttgaaataaaatcttttggaggaaaactacttttgacttgttttcccttgatacatcattcacatattttatctttttcgaagttg 112  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||||||||| ||||||    
T  11376985 aaggggtctttttgttgaaataaaatctgttggaggaaaactacttttgacttgttttcccttgacacatgtttcacatattttatctttttcaaagttg 11376886  T
Q  113 atcttaggaagtcctctcactagaacaagtcttgatattttttagattgtttccatacttatatgtccaacccttttgtgccaaatccatttgtcttttt 212  Q
    ||||||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  11376885 atcttaggaagtcctcttactagaacaagtcttgatatttttgagattgtttccagacttatatgtccagcccttttgtgccaaatccatttgtcttttt 11376786  T
Q  213 caagagatataaaataggattcaac 237  Q
    ||||||||||||||  |||||||||    
T  11376785 caagagatataaaacgggattcaac 11376761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 13 - 236
Target Start/End: Original strand, 27747801 - 27748024
Alignment:
Q  13 aaggggtctttttgttgaaataaaatcttttggaggaaaactacttttgacttgttttcccttgatacatcattcacatattttatctttttcgaagttg 112  Q
    ||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||||||||| ||||  ||||||||||||||||||||| ||||||    
T  27747801 aaggggtctttttgttgaaatgaactcttttggagaaaaactacttttgacttgttttcccttgacacatgcttcacatattttatctttttcaaagttg 27747900  T
Q  113 atcttaggaagtcctctcactagaacaagtcttgatattttttagattgtttccatacttatatgtccaacccttttgtgccaaatccatttgtcttttt 212  Q
    ||||||||||||||||| |||||| ||||||||||||||||| | || ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  27747901 atcttaggaagtcctcttactagatcaagtcttgatatttttgaaatagtttccatacttatatgtccagcccttttgtgccaaatccatttgtcttttt 27748000  T
Q  213 caagagatataaaataggattcaa 236  Q
    | ||||| |||||| |||||||||    
T  27748001 cgagagaaataaaacaggattcaa 27748024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 241 - 415
Target Start/End: Complemental strand, 11375032 - 11374858
Alignment:
Q  241 tttggcagtgttgcattcttgtattctatcaaattcttccctgcttaaagtcatggttagaaataatttagctttaaagtttaatagaacacgtttacct 340  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  11375032 tttggcagtgttgcattcttgtattctatcaaattcttccctgcttaaagccatggttagaaataatttagctttaaagtttaatagaacacgtttacct 11374933  T
Q  341 tcttcctcttaccaatcttcctttttcttgacatttagatcttcatcatatgaaatgtaatttccatcttctatt 415  Q
    ||||| ||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  11374932 tcttcttctgaccaatcttcctttttattgacatttagatcttcatcatatggaatgtaatttccatcttctatt 11374858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 241 - 415
Target Start/End: Original strand, 27749767 - 27749941
Alignment:
Q  241 tttggcagtgttgcattcttgtattctatcaaattcttccctgcttaaagtcatggttagaaataatttagctttaaagtttaatagaacacgtttacct 340  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||     
T  27749767 tttggcattgttgcattcttgtattctatcaaattcttccctgcttaaagccatggttagaaacaatttagctttaaagtttaatagaacacgcttacca 27749866  T
Q  341 tcttcctcttaccaatcttcctttttcttgacatttagatcttcatcatatgaaatgtaatttccatcttctatt 415  Q
    ||||| ||| |||||||||||||||| || |||||||||||||||||||||| | |||||||||| |||||||||    
T  27749867 tcttcttctgaccaatcttcctttttttttacatttagatcttcatcatatggagtgtaatttccttcttctatt 27749941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 17 - 225
Target Start/End: Complemental strand, 8998031 - 8997823
Alignment:
Q  17 ggtctttttgttgaaataaaatcttttggaggaaaactacttttgacttgttttcccttgatacatcattcacatattttatctttttcgaagttgatct 116  Q
    ||||||||||||||||| || |||||||||||||||||||||||||||||||||||  |||  |||  ||||||||||||||| || ||  |||| ||||    
T  8998031 ggtctttttgttgaaatgaattcttttggaggaaaactacttttgacttgttttcctctgacgcatgcttcacatattttatccttctcatagttaatct 8997932  T
Q  117 taggaagtcctctcactagaacaagtcttgatattttttagattgtttccatacttatatgtccaacccttttgtgccaaatccatttgtctttttcaag 216  Q
    ||||||||||||| |||| | ||||| |||||||| |  | |||||||||||||||||||| ||  ||||||| |||||||||||||| || ||||||||    
T  8997931 taggaagtcctcttactaaatcaagttttgatattctggaaattgtttccatacttatatggcctgcccttttatgccaaatccatttatccttttcaag 8997832  T
Q  217 agatataaa 225  Q
     ||||||||    
T  8997831 ggatataaa 8997823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 17 - 225
Target Start/End: Complemental strand, 9007200 - 9006992
Alignment:
Q  17 ggtctttttgttgaaataaaatcttttggaggaaaactacttttgacttgttttcccttgatacatcattcacatattttatctttttcgaagttgatct 116  Q
    |||||| |||||||||| || || ||||||||||||||||||||||||||||||||  | |  |||  ||||||||||||||| || ||  |||| ||||    
T  9007200 ggtcttcttgttgaaatgaattcctttggaggaaaactacttttgacttgttttcctctaacgcatgcttcacatattttatccttctcatagttaatct 9007101  T
Q  117 taggaagtcctctcactagaacaagtcttgatattttttagattgtttccatacttatatgtccaacccttttgtgccaaatccatttgtctttttcaag 216  Q
    ||||||||||||| |||| | ||||| |||||||| |  | |||||||||||||||||||| ||  ||||||| |||||||||||||| || ||||||||    
T  9007100 taggaagtcctcttactaaatcaagttttgatattctggaaattgtttccatacttatatgacctgcccttttatgccaaatccatttatccttttcaag 9007001  T
Q  217 agatataaa 225  Q
     ||||||||    
T  9007000 ggatataaa 9006992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 241 - 399
Target Start/End: Complemental strand, 8996060 - 8995902
Alignment:
Q  241 tttggcagtgttgcattcttgtattctatcaaattcttccctgcttaaagtcatggttagaaataatttagctttaaagtttaatagaacacgtttacct 340  Q
    ||||||| | ||||||| ||||| ||||||| ||||||||||||| || | |||||||||||||| |||||||||||| |||||||  |  || ||||||    
T  8996060 tttggcatttttgcatttttgtactctatcatattcttccctgctcaatgccatggttagaaatagtttagctttaaaatttaataacatgcgcttacct 8995961  T
Q  341 tcttcctcttaccaatcttcctttttcttgacatttagatcttcatcatatgaaatgta 399  Q
    ||||| ||| |||| ||||||||||||||  ||||||||||||||||||||| ||||||    
T  8995960 tcttcttctgaccagtcttcctttttcttttcatttagatcttcatcatatggaatgta 8995902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 241 - 399
Target Start/End: Complemental strand, 9005243 - 9005085
Alignment:
Q  241 tttggcagtgttgcattcttgtattctatcaaattcttccctgcttaaagtcatggttagaaataatttagctttaaagtttaatagaacacgtttacct 340  Q
    ||||||| | ||||||| ||||| ||||||| ||||||||||||| || | |||||||||||||| |||||||||||| |||||||  |  || ||||||    
T  9005243 tttggcatttttgcattgttgtactctatcatattcttccctgctcaatgccatggttagaaatagtttagctttaaaatttaataacatgcgcttacct 9005144  T
Q  341 tcttcctcttaccaatcttcctttttcttgacatttagatcttcatcatatgaaatgta 399  Q
    ||||| ||| |||| ||||||||||||||  ||||||||||||||||||||| ||||||    
T  9005143 tcttcttctgaccagtcttcctttttcttttcatttagatcttcatcatatggaatgta 9005085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 161 - 235
Target Start/End: Complemental strand, 16901388 - 16901314
Alignment:
Q  161 gtttccatacttatatgtccaacccttttgtgccaaatccatttgtctttttcaagagatataaaataggattca 235  Q
    |||| ||| |||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||| | ||||||    
T  16901388 gttttcatgcttatatgaccagcccttttgtgccagatccatttgtctttttcaagagatataaaacaagattca 16901314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 161 - 235
Target Start/End: Complemental strand, 18163507 - 18163433
Alignment:
Q  161 gtttccatacttatatgtccaacccttttgtgccaaatccatttgtctttttcaagagatataaaataggattca 235  Q
    |||| ||| |||||||| ||| ||||||||||||| ||||||||||||||||||||||| |||||| | ||||||    
T  18163507 gttttcatgcttatatgaccagcccttttgtgccagatccatttgtctttttcaagagacataaaacaagattca 18163433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 161 - 235
Target Start/End: Original strand, 24929064 - 24929138
Alignment:
Q  161 gtttccatacttatatgtccaacccttttgtgccaaatccatttgtctttttcaagagatataaaataggattca 235  Q
    |||| ||| |||||||| ||| ||||||||||||| ||||||||||||||||||||||| |||||| | ||||||    
T  24929064 gttttcatgcttatatgaccagcccttttgtgccagatccatttgtctttttcaagagacataaaacaagattca 24929138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 161 - 235
Target Start/End: Complemental strand, 31360261 - 31360187
Alignment:
Q  161 gtttccatacttatatgtccaacccttttgtgccaaatccatttgtctttttcaagagatataaaataggattca 235  Q
    |||| ||| |||||||| ||| ||||||||||||| ||||||||||||||||||||||| |||||| | ||||||    
T  31360261 gttttcatgcttatatgaccagcccttttgtgccagatccatttgtctttttcaagagacataaaacaagattca 31360187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 161 - 237
Target Start/End: Complemental strand, 29562862 - 29562786
Alignment:
Q  161 gtttccatacttatatgtccaacccttttgtgccaaatccatttgtctttttcaagagatataaaataggattcaac 237  Q
    |||| ||| |||||||| ||| ||||||||||||| ||||||||||||||||||| ||| |||||| | ||||||||    
T  29562862 gttttcatgcttatatgaccagcccttttgtgccagatccatttgtctttttcaatagacataaaacaagattcaac 29562786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 173; Significance: 7e-93; HSPs: 3)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 13 - 237
Target Start/End: Complemental strand, 18178 - 17954
Alignment:
Q  13 aaggggtctttttgttgaaataaaatcttttggaggaaaactacttttgacttgttttcccttgatacatcattcacatattttatctttttcgaagttg 112  Q
    ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| ||| ||||  ||||||||||||||||||||| ||||||    
T  18178 aaggggtctttttgttgaaatgaactcttttggaggaaaactacttttgacttgttttcccatgacacatgcttcacatattttatctttttcaaagttg 18079  T
Q  113 atcttaggaagtcctctcactagaacaagtcttgatattttttagattgtttccatacttatatgtccaacccttttgtgccaaatccatttgtcttttt 212  Q
    ||||||||||||||||| |||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18078 atcttaggaagtcctcttactagatcaagtcttgatatttttgaaattgtttccatacttatatgtccaacccttttgtgccaaatccatttgtcttttt 17979  T
Q  213 caagagatataaaataggattcaac 237  Q
    | |||||||||||| ||||||||||    
T  17978 cgagagatataaaacaggattcaac 17954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 241 - 415
Target Start/End: Complemental strand, 16229 - 16053
Alignment:
Q  241 tttggcagtgttgcattcttgtattctatcaaattcttccctgcttaaagtcatggttagaaataatttagctttaaagtttaatagaacacgtttacct 340  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||     
T  16229 tttggcattgttgcattcttgtattctatcaaattcttccctgcttaaagccatggttagaaacaatttagctttaaagtttaatagaacacgcttacca 16130  T
Q  341 tcttcctcttaccaatc--ttcctttttcttgacatttagatcttcatcatatgaaatgtaatttccatcttctatt 415  Q
    ||||| ||| |||||||  ||  ||||| ||||||||||||||||||||||||| | |||||||||| |||||||||    
T  16129 tcttcttctgaccaatcttttttttttttttgacatttagatcttcatcatatggagtgtaatttccttcttctatt 16053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 161 - 225
Target Start/End: Original strand, 85426 - 85490
Alignment:
Q  161 gtttccatacttatatgtccaacccttttgtgccaaatccatttgtctttttcaagagatataaa 225  Q
    |||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||    
T  85426 gttttcatacttatatgaccagcccttttgtgccaaatccatttgtctttttcaagagacataaa 85490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 164; Significance: 2e-87; HSPs: 2)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 13 - 236
Target Start/End: Complemental strand, 166466 - 166243
Alignment:
Q  13 aaggggtctttttgttgaaataaaatcttttggaggaaaactacttttgacttgttttcccttgatacatcattcacatattttatctttttcgaagttg 112  Q
    ||||||||||||||||||||||  ||||| ||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||||||||| ||||||    
T  166466 aaggggtctttttgttgaaatattatcttgtggaggaaaactacttttgacttgttttcccttgacacatgcttcacatattttatctttttcaaagttg 166367  T
Q  113 atcttaggaagtcctctcactagaacaagtcttgatattttttagattgtttccatacttatatgtccaacccttttgtgccaaatccatttgtcttttt 212  Q
    ||||||||||||||||| |||| | ||||||||||||||||  |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  166366 atcttaggaagtcctcttactatatcaagtcttgatattttcgagattgtttccatacttatatgtccagcccttttgtgccaaatccatttgtcttttt 166267  T
Q  213 caagagatataaaataggattcaa 236  Q
    | |||||||||||| |||||||||    
T  166266 ctagagatataaaacaggattcaa 166243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #2
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 245 - 415
Target Start/End: Complemental strand, 164499 - 164329
Alignment:
Q  245 gcagtgttgcattcttgtattctatcaaattcttccctgcttaaagtcatggttagaaataatttagctttaaagtttaatagaacacgtttaccttctt 344  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  164499 gcagtgttgcattcttgtattctatcaaattcttccctgcttaaagccatggttagaaataatttagctttaaagtttaatagaacacgtttaccttctt 164400  T
Q  345 cctcttaccaatcttcctttttcttgacatttagatcttcatcatatgaaatgtaatttccatcttctatt 415  Q
    | ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  164399 cttctgaccaatcttcctttttcttgacatttagatcttcatcatatggaatgtaatttccttcttctatt 164329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 137; Significance: 2e-71; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 13 - 237
Target Start/End: Original strand, 25508161 - 25508385
Alignment:
Q  13 aaggggtctttttgttgaaataaaatcttttggaggaaaactacttttgacttgttttcccttgatacatcattcacatattttatctttttcgaagttg 112  Q
    ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||| ||||  |||||| ||||| || || || || |||    
T  25508161 aaggggtctttttgttgaaataaaatcttctggaagaaaactacttttgacttgttttcctttgacacatgcttcacaaattttgtccttctcaaaattg 25508260  T
Q  113 atcttaggaagtcctctcactagaacaagtcttgatattttttagattgtttccatacttatatgtccaacccttttgtgccaaatccatttgtcttttt 212  Q
    ||||||||||||||||| |||||| ||||| ||||||||||| | || ||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  25508261 atcttaggaagtcctcttactagatcaagttttgatatttttgaaatggtttcaatacttatatgtccagcccttttgtgccaaatccatttgtcttttt 25508360  T
Q  213 caagagatataaaataggattcaac 237  Q
    |||||||||| ||| ||||||||||    
T  25508361 caagagatattaaacaggattcaac 25508385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 240 - 415
Target Start/End: Original strand, 25510116 - 25510291
Alignment:
Q  240 ttttggcagtgttgcattcttgtattctatcaaattcttccctgcttaaagtcatggttagaaataatttagctttaaagtttaatagaacacgtttacc 339  Q
    |||||||| | ||| ||||||||| | |||||||||||||| |||| |||| ||| ||||||||||||||||||||||||||||||||||||| ||||      
T  25510116 ttttggcatttttgtattcttgtaatatatcaaattcttccttgctcaaagccatcgttagaaataatttagctttaaagtttaatagaacacatttagt 25510215  T
Q  340 ttcttcctcttaccaatcttcctttttcttgacatttagatcttcatcatatgaaatgtaatttccatcttctatt 415  Q
    |||||| ||| |||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  25510216 ttcttcttctgaccaatcttcttttttcttgacattttgatcttcatcatatggaatgtaatttccatcttctatt 25510291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 17 - 225
Target Start/End: Complemental strand, 19687982 - 19687774
Alignment:
Q  17 ggtctttttgttgaaataaaatcttttggaggaaaactacttttgacttgttttcccttgatacatcattcacatattttatctttttcgaagttgatct 116  Q
    ||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||  |||  || |||||||||||| || ||  |||| ||||    
T  19687982 ggtctttttgttgaaatgaattcttttggaggaaaactacttttgacttgttttcctttgacgcatgctttacatattttatccttctcatagttaatct 19687883  T
Q  117 taggaagtcctctcactagaacaagtcttgatattttttagattgtttccatacttatatgtccaacccttttgtgccaaatccatttgtctttttcaag 216  Q
    ||||||||||||| |||| | || || |||||||| |  | |||||||||||||||||||| ||  |||||||||||||||||||| | || ||||||||    
T  19687882 taggaagtcctcttactaaatcatgttttgatattctggaaattgtttccatacttatatggcctgcccttttgtgccaaatccatctatccttttcaag 19687783  T
Q  217 agatataaa 225  Q
     ||||||||    
T  19687782 ggatataaa 19687774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 49 - 215
Target Start/End: Complemental strand, 48981854 - 48981688
Alignment:
Q  49 aaaactacttttgacttgttttcc-cttgatacatcattcacatattttatctttttcgaagttgatcttaggaagtcctctcactagaacaagtcttga 147  Q
    |||||||||||||||||||||||| |||| | |||  |||||| ||||||||||||||  |  | || || ||||| ||||| |||||| |||||   ||    
T  48981854 aaaactacttttgacttgttttcctcttg-tgcatgcttcacagattttatctttttcataacttatttttggaagccctctaactagatcaagttggga 48981756  T
Q  148 tattttttagattgtttccatacttatatgtccaacccttttgtgccaaatccatttgtctttttcaa 215  Q
     |||||| | || |||| |||||||| ||||||| | |||||||||||||||||||||||||||||||    
T  48981755 aatttttgaaatagttttcatacttacatgtccagctcttttgtgccaaatccatttgtctttttcaa 48981688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 241 - 342
Target Start/End: Original strand, 5151104 - 5151205
Alignment:
Q  241 tttggcagtgttgcattcttgtattctatcaaattcttccctgcttaaagtcatggttagaaataatttagctttaaagtttaatagaacacgtttacct 340  Q
    ||||| ||| ||||||||||| | |||| |  |||||||||||||||||| |||||||||||||||||||  |||||||||||||| |||  ||||||||    
T  5151104 tttggtagttttgcattcttgaactctaacgtattcttccctgcttaaagccatggttagaaataatttaattttaaagtttaataaaacgtgtttacct 5151203  T
Q  341 tc 342  Q
    ||    
T  5151204 tc 5151205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 161 - 235
Target Start/End: Complemental strand, 6425750 - 6425676
Alignment:
Q  161 gtttccatacttatatgtccaacccttttgtgccaaatccatttgtctttttcaagagatataaaataggattca 235  Q
    |||| ||| |||||||| ||| ||||||||||||| ||||||||||||||||||||||| |||||| | ||||||    
T  6425750 gttttcatgcttatatgaccagcccttttgtgccagatccatttgtctttttcaagagacataaaacaagattca 6425676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 161 - 235
Target Start/End: Complemental strand, 8976288 - 8976214
Alignment:
Q  161 gtttccatacttatatgtccaacccttttgtgccaaatccatttgtctttttcaagagatataaaataggattca 235  Q
    |||| ||| |||||||| ||| ||||||||||||| ||||||||||||||||||||||| |||||| | ||||||    
T  8976288 gttttcatgcttatatgaccagcccttttgtgccagatccatttgtctttttcaagagacataaaacaagattca 8976214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 161 - 235
Target Start/End: Complemental strand, 9540577 - 9540503
Alignment:
Q  161 gtttccatacttatatgtccaacccttttgtgccaaatccatttgtctttttcaagagatataaaataggattca 235  Q
    |||| ||| |||||||| ||| ||||||||||||| ||||||||||||||||||||||| |||||| | ||||||    
T  9540577 gttttcatgcttatatgaccagcccttttgtgccagatccatttgtctttttcaagagacataaaacaagattca 9540503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 161 - 235
Target Start/End: Complemental strand, 16405051 - 16404977
Alignment:
Q  161 gtttccatacttatatgtccaacccttttgtgccaaatccatttgtctttttcaagagatataaaataggattca 235  Q
    |||| ||| |||||||| ||| ||||||||||||| ||||||||||||||||||||||| |||||| | ||||||    
T  16405051 gttttcatgcttatatgaccagcccttttgtgccagatccatttgtctttttcaagagacataaaacaagattca 16404977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 119 - 216
Target Start/End: Original strand, 28361587 - 28361684
Alignment:
Q  119 ggaagtcctctcactagaacaagtcttgatattttttagattgtttccatacttatatgtccaacccttttgtgccaaatccatttgtctttttcaag 216  Q
    ||||||||||| || ||| | ||| | || |||||| | || |||| |||||||||||||||| | |||||||||||||||||||| |||||||||||    
T  28361587 ggaagtcctcttacgagatccagtttggagatttttgaaatagttttcatacttatatgtccagctcttttgtgccaaatccatttatctttttcaag 28361684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 179 - 226
Target Start/End: Original strand, 5147728 - 5147775
Alignment:
Q  179 ccaacccttttgtgccaaatccatttgtctttttcaagagatataaaa 226  Q
    |||||||| ||||||||||||||||| |||||||||||||||||||||    
T  5147728 ccaaccctcttgtgccaaatccatttatctttttcaagagatataaaa 5147775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 85 - 215
Target Start/End: Original strand, 4363909 - 4364039
Alignment:
Q  85 ttcacatattttatctttttcgaagttgatcttaggaagtcctctcactagaacaagtcttgatattttttagattgtttccatacttatatgtccaacc 184  Q
    |||||||||| |||||||||| || || ||  | ||||||||||| |||||| | ||| | || |||||||| || |||| | |||||| |||| || |     
T  4363909 ttcacatattctatctttttcaaaattaattattggaagtcctcttactagatctagtttggaaattttttaaatagttttcgtacttacatgttcagct 4364008  T
Q  185 cttttgtgccaaatccatttgtctttttcaa 215  Q
    ||||||||| ||||| |||||||||||||||    
T  4364009 cttttgtgctaaatcgatttgtctttttcaa 4364039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 254 - 323
Target Start/End: Complemental strand, 2156283 - 2156214
Alignment:
Q  254 cattcttgtattctatcaaattcttccctgcttaaag-tcatggttagaaataatttagctttaaagttta 323  Q
    ||||||| |||||||||| ||||||||||||||||||  ||| ||||||||||||| ||||||| ||||||    
T  2156283 cattcttctattctatcatattcttccctgcttaaagcacat-gttagaaataattgagctttagagttta 2156214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 254 - 323
Target Start/End: Original strand, 40092594 - 40092663
Alignment:
Q  254 cattcttgtattctatcaaattcttccctgcttaaag-tcatggttagaaataatttagctttaaagttta 323  Q
    ||||||| |||||||||| ||||||||||||||||||  ||| ||||||||||||| ||||||| ||||||    
T  40092594 cattcttctattctatcatattcttccctgcttaaagcacat-gttagaaataattgagctttagagttta 40092663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 123; Significance: 5e-63; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 241 - 415
Target Start/End: Original strand, 753 - 927
Alignment:
Q  241 tttggcagtgttgcattcttgtattctatcaaattcttccctgcttaaagtcatggttagaaataatttagctttaaagtttaatagaacacgtttacct 340  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||| |||||     
T  753 tttggcattgttgcattcttgtattctatcaaattcttccctgcttaaggccatggttagaaataatttagctttaaaatttaatagaacacgcttacca 852  T
Q  341 tcttcctcttaccaatcttcctttttcttgacatttagatcttcatcatatgaaatgtaatttccatcttctatt 415  Q
    ||||| ||| |||||||||||||||| || |||||||||||||||||||||| | |||||||||| |||||||||    
T  853 tcttcttctgaccaatcttcctttttttttacatttagatcttcatcatatggagtgtaatttccttcttctatt 927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 121; Significance: 7e-62; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 13 - 225
Target Start/End: Complemental strand, 18711185 - 18710973
Alignment:
Q  13 aaggggtctttttgttgaaataaaatcttttggaggaaaactacttttgacttgttttcccttgatacatcattcacatattttatctttttcgaagttg 112  Q
    |||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||||  ||||||||| |||||||| || |||||     
T  18711185 aaggggtctttttgttgaaataaattcttttggagaaaaactgcttttgacttgttttcccttgatacatgcttcacatatcttatctttctcaaagttt 18711086  T
Q  113 atcttaggaagtcctctcactagaacaagtcttgatattttttagattgtttccatacttatatgtccaacccttttgtgccaaatccatttgtcttttt 212  Q
    ||||||||||||||||| |||||| | ||| |||| |||||  | || || |||||||||||||||||| ||||||| |||||||||||||| || ||||    
T  18711085 atcttaggaagtcctcttactagatctagttttgaaattttggaaatagtatccatacttatatgtccagcccttttatgccaaatccatttatcctttt 18710986  T
Q  213 caagagatataaa 225  Q
    |||||||||||||    
T  18710985 caagagatataaa 18710973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 17 - 225
Target Start/End: Original strand, 725299 - 725507
Alignment:
Q  17 ggtctttttgttgaaataaaatcttttggaggaaaactacttttgacttgttttcccttgatacatcattcacatattttatctttttcgaagttgatct 116  Q
    ||||||||||||||||| || |||||||||||||||||||||||||||||||||||  |||  |||  ||||||||||||||| || ||  |||| ||||    
T  725299 ggtctttttgttgaaatgaattcttttggaggaaaactacttttgacttgttttcctctgacgcatgcttcacatattttatccttctcatagttaatct 725398  T
Q  117 taggaagtcctctcactagaacaagtcttgatattttttagattgtttccatacttatatgtccaacccttttgtgccaaatccatttgtctttttcaag 216  Q
    ||||||||||||| |||| | ||||| |||||||| |  | |||||||||||||||||||| ||  ||||||| |||||||||||||| || ||||||||    
T  725399 taggaagtcctcttactaaatcaagttttgatattctggaaattgtttccatacttatatggcctgcccttttatgccaaatccatttatccttttcaag 725498  T
Q  217 agatataaa 225  Q
     ||||||||    
T  725499 ggatataaa 725507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 56 - 225
Target Start/End: Original strand, 15327617 - 15327786
Alignment:
Q  56 cttttgacttgttttcccttgatacatcattcacatattttatctttttcgaagttgatcttaggaagtcctctcactagaacaagtcttgatatttttt 155  Q
    |||||||||||||||||||||||||||  ||||||||| |||||||| || ||||| ||||||||||||||||| |||||| | ||| |||| |||||      
T  15327617 cttttgacttgttttcccttgatacatgcttcacatatcttatctttctcaaagtttatcttaggaagtcctcttactagatctagttttgaaattttgg 15327716  T
Q  156 agattgtttccatacttatatgtccaacccttttgtgccaaatccatttgtctttttcaagagatataaa 225  Q
    | || || |||||||||||||||||| ||||||| |||||||||||||| || |||||||| ||||||||    
T  15327717 aaatagtatccatacttatatgtccagcccttttatgccaaatccatttatccttttcaagggatataaa 15327786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 251 - 407
Target Start/End: Original strand, 727280 - 727436
Alignment:
Q  251 ttgcattcttgtattctatcaaattcttccctgcttaaagtcatggttagaaataatttagctttaaagtttaatagaacacgtttaccttcttcctctt 350  Q
    ||||||||||||| ||||||| ||||||||||||| || | |||||||||||||| |||||||||||| |||||||  |  || ||||||||||| |||     
T  727280 ttgcattcttgtactctatcatattcttccctgctcaacgccatggttagaaatagtttagctttaaaatttaataacatgcgcttaccttcttcttctg 727379  T
Q  351 accaatcttcctttttcttgacatttagatcttcatcatatgaaatgtaatttccat 407  Q
    |||| ||||||||||||||  ||||||||||||||||||||| |||||| |||||||    
T  727380 accagtcttcctttttcttttcatttagatcttcatcatatggaatgtagtttccat 727436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 241 - 405
Target Start/End: Original strand, 15329519 - 15329683
Alignment:
Q  241 tttggcagtgttgcattcttgtattctatcaaattcttccctgcttaaagtcatggttagaaataatttagctttaaagtttaatagaacacgtttacct 340  Q
    ||||||||| |||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||| || | |||| |||| ||||||    
T  15329519 tttggcagttttgctttcttgtactctatcaaattcttccctgcttaaagccatggttagaaataattttgctttaaaattaagtagagcacgcttacct 15329618  T
Q  341 tcttcctcttaccaatcttcctttttcttgacatttagatcttcatcatatgaaatgtaatttcc 405  Q
    || || ||  |||| ||||| | ||| || |  |||||||| |||||||||| |||||| |||||    
T  15329619 tcctcttccgaccagtcttcttgtttttttatgtttagatcctcatcatatgcaatgtagtttcc 15329683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 241 - 405
Target Start/End: Complemental strand, 18709240 - 18709076
Alignment:
Q  241 tttggcagtgttgcattcttgtattctatcaaattcttccctgcttaaagtcatggttagaaataatttagctttaaagtttaatagaacacgtttacct 340  Q
    ||||||||| |||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||| || | |||| |||| ||||||    
T  18709240 tttggcagttttgctttcttgtactctatcaaattcttccctgcttaaagccatggttagaaataattttgctttaaaattaagtagagcacgcttacct 18709141  T
Q  341 tcttcctcttaccaatcttcctttttcttgacatttagatcttcatcatatgaaatgtaatttcc 405  Q
    || || ||  |||| ||||| | ||| || |  |||||||| |||||||||| |||||| |||||    
T  18709140 tcctcttccgaccagtcttcttgtttttttatgtttagatcctcatcatatgcaatgtagtttcc 18709076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 49 - 215
Target Start/End: Complemental strand, 5603751 - 5603585
Alignment:
Q  49 aaaactacttttgacttgttttcc-cttgatacatcattcacatattttatctttttcgaagttgatcttaggaagtcctctcactagaacaagtcttga 147  Q
    |||||||||||||||||||||||| |||| | |||  |||||| ||||||||||||||  |  | || || ||||| ||||| |||||| |||||   ||    
T  5603751 aaaactacttttgacttgttttcctcttg-tgcatgcttcacagattttatctttttcataacttatttttggaagccctctaactagatcaagttggga 5603653  T
Q  148 tattttttagattgtttccatacttatatgtccaacccttttgtgccaaatccatttgtctttttcaa 215  Q
     |||||| | || |||| |||||||| ||||||| | |||||||||||||||||||||||||||||||    
T  5603652 aatttttgaaatagttttcatacttacatgtccagctcttttgtgccaaatccatttgtctttttcaa 5603585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 89 - 216
Target Start/End: Complemental strand, 24415740 - 24415613
Alignment:
Q  89 catattttatctttttcgaagttgatcttaggaagtcctctcactagaacaagtcttgatattttttagattgtttccatacttatatgtccaacccttt 188  Q
    |||||| |||||||||| || |  || || ||||||||||| || ||| | ||| | || |||||| | || |||| |||||||||||||||| | ||||    
T  24415740 catattctatctttttcaaaatcaatttttggaagtcctcttacaagatccagtttggagatttttgaaatagttttcatacttatatgtccagctcttt 24415641  T
Q  189 tgtgccaaatccatttgtctttttcaag 216  Q
    |||||||||||||||| |||||||||||    
T  24415640 tgtgccaaatccatttatctttttcaag 24415613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 161 - 235
Target Start/End: Complemental strand, 18383182 - 18383108
Alignment:
Q  161 gtttccatacttatatgtccaacccttttgtgccaaatccatttgtctttttcaagagatataaaataggattca 235  Q
    |||| ||| |||||||| ||| ||||||||||||| ||||||||||||||||||||||| |||||| | ||||||    
T  18383182 gttttcatgcttatatgaccagcccttttgtgccagatccatttgtctttttcaagagacataaaacaagattca 18383108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 161 - 235
Target Start/End: Complemental strand, 20951303 - 20951229
Alignment:
Q  161 gtttccatacttatatgtccaacccttttgtgccaaatccatttgtctttttcaagagatataaaataggattca 235  Q
    |||| |||||||||||| ||| | |||||||||||||||||||| |||||||||||||| |||||| | ||||||    
T  20951303 gttttcatacttatatgaccagctcttttgtgccaaatccatttatctttttcaagagaaataaaacatgattca 20951229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 161 - 235
Target Start/End: Original strand, 26199224 - 26199298
Alignment:
Q  161 gtttccatacttatatgtccaacccttttgtgccaaatccatttgtctttttcaagagatataaaataggattca 235  Q
    |||| ||| |||||||| ||| ||||||||||||| ||||||||||||||||||||||| |||||| | ||||||    
T  26199224 gttttcatgcttatatgaccagcccttttgtgccagatccatttgtctttttcaagagacataaaacaagattca 26199298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 161 - 235
Target Start/End: Complemental strand, 27415590 - 27415516
Alignment:
Q  161 gtttccatacttatatgtccaacccttttgtgccaaatccatttgtctttttcaagagatataaaataggattca 235  Q
    |||| ||| |||||||| ||| ||||||||||||| ||||||||||||||||||||||| |||||| | ||||||    
T  27415590 gttttcatgcttatatgaccagcccttttgtgccagatccatttgtctttttcaagagacataaaacaagattca 27415516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 161 - 235
Target Start/End: Complemental strand, 33942762 - 33942688
Alignment:
Q  161 gtttccatacttatatgtccaacccttttgtgccaaatccatttgtctttttcaagagatataaaataggattca 235  Q
    |||| ||| |||||||| ||| ||||||||||||| ||||||||||||||||||||||| |||||| | ||||||    
T  33942762 gttttcatgcttatatgaccagcccttttgtgccagatccatttgtctttttcaagagacataaaacaagattca 33942688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 161 - 216
Target Start/End: Original strand, 30451539 - 30451594
Alignment:
Q  161 gtttccatacttatatgtccaacccttttgtgccaaatccatttgtctttttcaag 216  Q
    |||| |||||||||||||||| | |||||||||||||||||||| |||||||||||    
T  30451539 gttttcatacttatatgtccagctcttttgtgccaaatccatttatctttttcaag 30451594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 109; Significance: 1e-54; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 13 - 225
Target Start/End: Original strand, 45496025 - 45496237
Alignment:
Q  13 aaggggtctttttgttgaaataaaatcttttggaggaaaactacttttgacttgttttcccttgatacatcattcacatattttatctttttcgaagttg 112  Q
    |||||| || |||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||||  ||||||||| |||||||| || |||||     
T  45496025 aaggggcctctttgttgaaataaattcttttggagaaaaactgcttttgacttgttttcccttgatacatgcttcacatatcttatctttctcaaagttt 45496124  T
Q  113 atcttaggaagtcctctcactagaacaagtcttgatattttttagattgtttccatacttatatgtccaacccttttgtgccaaatccatttgtcttttt 212  Q
    ||||||||||||||||| |||||| | ||| |||| |||||  | || || | |||||||||||||||||||||||| |||||||||||||| || ||||    
T  45496125 atcttaggaagtcctcttactagatctagttttgaaattttggaaatagtatacatacttatatgtccaacccttttatgccaaatccatttatcctttt 45496224  T
Q  213 caagagatataaa 225  Q
    |||| ||||||||    
T  45496225 caagggatataaa 45496237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 17 - 226
Target Start/End: Complemental strand, 19753890 - 19753682
Alignment:
Q  17 ggtctttttgttgaaataaaatcttttggaggaaaactacttttgacttgttttcccttgatacatcattcacatattttatctttttcgaagttgatct 116  Q
    |||||||||||||||||||||||||| ||||||||| | |||||||||||||||||   || ||||  ||||||||| ||||| || ||  |||| ||||    
T  19753890 ggtctttttgttgaaataaaatctttaggaggaaaattgcttttgacttgttttcctccgacacatgtttcacatatcttatccttctcatagttaatct 19753791  T
Q  117 taggaagtcctctcactagaacaagtcttgatattttttagattgtttccatacttatatgtccaacccttttgtgccaaatccatttgtctttttcaag 216  Q
    ||| ||||||||| |||||| ||||| |||||||| |  | |||||||||||||||||||| ||| || |||| |||||||||||||| || ||||||||    
T  19753790 tag-aagtcctcttactagatcaagttttgatattctagaaattgtttccatacttatatggccagcctttttatgccaaatccatttatccttttcaag 19753692  T
Q  217 agatataaaa 226  Q
     |||||||||    
T  19753691 ggatataaaa 19753682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 241 - 413
Target Start/End: Original strand, 45497967 - 45498139
Alignment:
Q  241 tttggcagtgttgcattcttgtattctatcaaattcttccctgcttaaagtcatggttagaaataatttagctttaaagtttaatagaacacgtttacct 340  Q
    ||||||||| |||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||| || | |||| |||||||||||    
T  45497967 tttggcagttttgctttcttgtactctatcaaattcttccctgcttaaagccatggttagaaataattttgctttaaaattaagtagagcacgtttacct 45498066  T
Q  341 tcttcctcttaccaatcttcctttttcttgacatttagatcttcatcatatgaaatgtaatttccatcttcta 413  Q
    || || ||  |||||||||| | ||| || |  ||||||||||||||||||| || ||| ||||||| |||||    
T  45498067 tcctcttccgaccaatcttcttctttttttatgtttagatcttcatcatatgcaacgtagtttccattttcta 45498139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 161 - 237
Target Start/End: Complemental strand, 22834180 - 22834104
Alignment:
Q  161 gtttccatacttatatgtccaacccttttgtgccaaatccatttgtctttttcaagagatataaaataggattcaac 237  Q
    |||| |||||||||||| ||| ||||||||||||||||| ||||||||||||||||||| |||||| | ||||||||    
T  22834180 gttttcatacttatatgaccagcccttttgtgccaaatctatttgtctttttcaagagacataaaacaagattcaac 22834104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 161 - 235
Target Start/End: Original strand, 21209869 - 21209943
Alignment:
Q  161 gtttccatacttatatgtccaacccttttgtgccaaatccatttgtctttttcaagagatataaaataggattca 235  Q
    |||| ||| |||||||| ||| ||||||||||||| ||||||||||||||||||||||| |||||| | ||||||    
T  21209869 gttttcatgcttatatgaccagcccttttgtgccagatccatttgtctttttcaagagacataaaacaagattca 21209943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 161 - 235
Target Start/End: Original strand, 14888588 - 14888662
Alignment:
Q  161 gtttccatacttatatgtccaacccttttgtgccaaatccatttgtctttttcaagagatataaaataggattca 235  Q
    |||| ||| |||||||| ||| ||||||| ||||| ||||||||||||||||||| ||| |||||  ||||||||    
T  14888588 gttttcatgcttatatgaccagcccttttatgccagatccatttgtctttttcaatagacataaagcaggattca 14888662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 85 - 215
Target Start/End: Original strand, 25048237 - 25048367
Alignment:
Q  85 ttcacatattttatctttttcgaagttgatcttaggaagtcctctcactagaacaagtcttgatattttttagattgtttccatacttatatgtccaacc 184  Q
    |||||||||||||||||| || || || || || ||||| ||||| ||||   | |||  ||| |||||| | ||||||| |||||| | ||||||| |     
T  25048237 ttcacatattttatctttctcaaaattaatttttggaagacctcttactaagtctagttgtgagatttttgaaattgttttcatactaacatgtccagct 25048336  T
Q  185 cttttgtgccaaatccatttgtctttttcaa 215  Q
    ||||| |||||||| ||||||||||| ||||    
T  25048337 cttttatgccaaattcatttgtctttatcaa 25048367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 109; Significance: 1e-54; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 13 - 225
Target Start/End: Complemental strand, 14935494 - 14935282
Alignment:
Q  13 aaggggtctttttgttgaaataaaatcttttggaggaaaactacttttgacttgttttcccttgatacatcattcacatattttatctttttcgaagttg 112  Q
    |||||| || |||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||||  ||||| |||||||||||| || |||||     
T  14935494 aaggggcctctttgttgaaataaattcttttggagaaaaactgcttttgacttgttttcccttgatacatgcttcacgtattttatctttctcaaagttt 14935395  T
Q  113 atcttaggaagtcctctcactagaacaagtcttgatattttttagattgtttccatacttatatgtccaacccttttgtgccaaatccatttgtcttttt 212  Q
    ||||||||||||||||| |||||| | ||| |||| |||||  | || || |||||||||||||||||| ||||||| |||||||||||||| || ||||    
T  14935394 atcttaggaagtcctcttactagatctagttttgaaattttggaaatagtatccatacttatatgtccagcccttttatgccaaatccatttatcctttt 14935295  T
Q  213 caagagatataaa 225  Q
    |||| ||||||||    
T  14935294 caagggatataaa 14935282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 17 - 225
Target Start/End: Complemental strand, 115333 - 115125
Alignment:
Q  17 ggtctttttgttgaaataaaatcttttggaggaaaactacttttgacttgttttcccttgatacatcattcacatattttatctttttcgaagttgatct 116  Q
    ||||||||||||||||| || |||||||||||||||||||||||||||||||||||  |||  |||  ||||||||||||||| || ||  |||| ||||    
T  115333 ggtctttttgttgaaatgaattcttttggaggaaaactacttttgacttgttttcctctgacgcatgcttcacatattttatccttctcatagttaatct 115234  T
Q  117 taggaagtcctctcactagaacaagtcttgatattttttagattgtttccatacttatatgtccaacccttttgtgccaaatccatttgtctttttcaag 216  Q
    ||||||||||||| |||| | ||||| |||||||| |  | |||||||||||||||||||| ||  ||||||| |||||||||||||| || ||||||||    
T  115233 taggaagtcctcttactaaatcaagttttgatattctggaaattgtttccatacttatatggcctgcccttttatgccaaatccatttatccttttcaag 115134  T
Q  217 agatataaa 225  Q
     ||||||||    
T  115133 ggatataaa 115125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 251 - 407
Target Start/End: Complemental strand, 113352 - 113196
Alignment:
Q  251 ttgcattcttgtattctatcaaattcttccctgcttaaagtcatggttagaaataatttagctttaaagtttaatagaacacgtttaccttcttcctctt 350  Q
    ||||||||||||| ||||||| ||||||||||||| || | |||||||||||||| |||||||||||| |||||||  |  || ||||||||||| |||     
T  113352 ttgcattcttgtactctatcatattcttccctgctcaacgccatggttagaaatagtttagctttaaaatttaataacatgcgcttaccttcttcttctg 113253  T
Q  351 accaatcttcctttttcttgacatttagatcttcatcatatgaaatgtaatttccat 407  Q
    |||| ||||||||||||||  ||||||||||||||||||||| |||||| |||||||    
T  113252 accagtcttcctttttcttttcatttagatcttcatcatatggaatgtagtttccat 113196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 241 - 413
Target Start/End: Complemental strand, 14933552 - 14933380
Alignment:
Q  241 tttggcagtgttgcattcttgtattctatcaaattcttccctgcttaaagtcatggttagaaataatttagctttaaagtttaatagaacacgtttacct 340  Q
    ||||||||| |||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||| || | |||| |||||||||||    
T  14933552 tttggcagttttgctttcttgtactctatcaaattcttccctgcttaaagccatggttagaaataattttgctttaaaattaagtagagcacgtttacct 14933453  T
Q  341 tcttcctcttaccaatcttcctttttcttgacatttagatcttcatcatatgaaatgtaatttccatcttcta 413  Q
    || || ||  |||||||||| | ||| || |  ||||||||||||||||||| || ||| ||||||| |||||    
T  14933452 tcctcttccgaccaatcttcttgtttttttatgtttagatcttcatcatatgcaacgtagtttccattttcta 14933380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 96 - 216
Target Start/End: Complemental strand, 26815395 - 26815275
Alignment:
Q  96 tatctttttcgaagttgatcttaggaagtcctctcactagaacaagtcttgatattttttagattgtttccatacttatatgtccaacccttttgtgcca 195  Q
    |||||||||| || || || || ||||||||||| || ||| | ||| | || |||||| | || |||| |||||||||||||||| | |||||||||||    
T  26815395 tatctttttcaaaattaatttttggaagtcctcttacaagatccagtttggagatttttgaaatagttttcatacttatatgtccagctcttttgtgcca 26815296  T
Q  196 aatccatttgtctttttcaag 216  Q
    ||||||||| |||||||||||    
T  26815295 aatccatttatctttttcaag 26815275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 161 - 235
Target Start/End: Complemental strand, 6695660 - 6695586
Alignment:
Q  161 gtttccatacttatatgtccaacccttttgtgccaaatccatttgtctttttcaagagatataaaataggattca 235  Q
    |||| ||| |||||||| ||| ||||||||||||| ||||||||||||||||||||||| |||||| | ||||||    
T  6695660 gttttcatgcttatatgaccagcccttttgtgccagatccatttgtctttttcaagagacataaaacaagattca 6695586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 166 - 235
Target Start/End: Original strand, 7843362 - 7843431
Alignment:
Q  166 catacttatatgtccaacccttttgtgccaaatccatttgtctttttcaagagatataaaataggattca 235  Q
    |||||||||||| ||| ||||||||||||| ||||||||||||||||||| ||| |||||  ||||||||    
T  7843362 catacttatatgaccagcccttttgtgccagatccatttgtctttttcaatagacataaagcaggattca 7843431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 171 - 235
Target Start/End: Complemental strand, 16268533 - 16268469
Alignment:
Q  171 ttatatgtccaacccttttgtgccaaatccatttgtctttttcaagagatataaaataggattca 235  Q
    ||||||| ||| ||||||||||||| ||||||||||||||||||| ||| |||||| ||||||||    
T  16268533 ttatatgaccagcccttttgtgccagatccatttgtctttttcaatagacataaaacaggattca 16268469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 89 - 216
Target Start/End: Original strand, 54696651 - 54696778
Alignment:
Q  89 catattttatctttttcgaagttgatcttaggaagtcctctcactagaacaagtcttgatattttttagattgtttccatacttatatgtccaacccttt 188  Q
    |||||| |||||||||| || |  || || ||||||||||| || ||| | ||| | || |||||| | || |||| ||||||||||||||||   ||||    
T  54696651 catattctatctttttcaaaatcaatttttggaagtcctcttacaagatccagtttggagatttttgaaatagttttcatacttatatgtccagttcttt 54696750  T
Q  189 tgtgccaaatccatttgtctttttcaag 216  Q
    |||||||||||||||| |||||||||||    
T  54696751 tgtgccaaatccatttatctttttcaag 54696778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 161 - 235
Target Start/End: Complemental strand, 17154859 - 17154785
Alignment:
Q  161 gtttccatacttatatgtccaacccttttgtgccaaatccatttgtctttttcaagagatataaaataggattca 235  Q
    |||| ||| |||||||| ||| | ||||||||||||||||||||||||||||||| ||| |||||| | ||||||    
T  17154859 gttttcatgcttatatgaccagctcttttgtgccaaatccatttgtctttttcaatagaaataaaacaagattca 17154785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 85 - 215
Target Start/End: Original strand, 18127805 - 18127935
Alignment:
Q  85 ttcacatattttatctttttcgaagttgatcttaggaagtcctctcactagaacaagtcttgatattttttagattgtttccatacttatatgtccaacc 184  Q
    |||||||||| |||||||||| || || ||  | ||||||||||| |||||| | ||| | || |||||||| || |||| | |||||| |||| || |     
T  18127805 ttcacatattctatctttttcaaaattaattattggaagtcctcttactagatctagtttggaaattttttaaatagttttcgtacttacatgttcagct 18127904  T
Q  185 cttttgtgccaaatccatttgtctttttcaa 215  Q
    ||||||||| ||||| |||||||||||||||    
T  18127905 cttttgtgctaaatcgatttgtctttttcaa 18127935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 254 - 323
Target Start/End: Complemental strand, 14531146 - 14531077
Alignment:
Q  254 cattcttgtattctatcaaattcttccctgcttaaag-tcatggttagaaataatttagctttaaagttta 323  Q
    ||||||| |||||||||| ||||||||||||||||||  ||| ||||||||||||| ||||||| ||||||    
T  14531146 cattcttctattctatcatattcttccctgcttaaagcacat-gttagaaataattgagctttagagttta 14531077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 97; Significance: 2e-47; HSPs: 2)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 17 - 225
Target Start/End: Complemental strand, 52200 - 51992
Alignment:
Q  17 ggtctttttgttgaaataaaatcttttggaggaaaactacttttgacttgttttcccttgatacatcattcacatattttatctttttcgaagttgatct 116  Q
    ||||||||||||||||| || |||||||||||||||||||||||||||||||||||  |||  |||  ||||||||||||||| || ||  |||| ||||    
T  52200 ggtctttttgttgaaatgaattcttttggaggaaaactacttttgacttgttttcctctgacgcatgcttcacatattttatccttctcatagttaatct 52101  T
Q  117 taggaagtcctctcactagaacaagtcttgatattttttagattgtttccatacttatatgtccaacccttttgtgccaaatccatttgtctttttcaag 216  Q
    ||||||||||||| |||| | ||||| |||||||| |  | |||||||||||||||||||| ||  ||||||| |||||||||||||| || ||||||||    
T  52100 taggaagtcctcttactaaatcaagttttgatattctggaaattgtttccatacttatatggcctgcccttttatgccaaatccatttatccttttcaag 52001  T
Q  217 agatataaa 225  Q
     ||||||||    
T  52000 ggatataaa 51992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 251 - 407
Target Start/End: Complemental strand, 50219 - 50063
Alignment:
Q  251 ttgcattcttgtattctatcaaattcttccctgcttaaagtcatggttagaaataatttagctttaaagtttaatagaacacgtttaccttcttcctctt 350  Q
    ||||||||||||| ||||||| ||||||||||||| || | |||||||||||||| |||||||||||| |||||||  |  || ||||||||||| |||     
T  50219 ttgcattcttgtactctatcatattcttccctgctcaacgccatggttagaaatagtttagctttaaaatttaataacatgcgcttaccttcttcttctg 50120  T
Q  351 accaatcttcctttttcttgacatttagatcttcatcatatgaaatgtaatttccat 407  Q
    |||| ||||||||||||||  ||||||||||||||||||||| |||||| |||||||    
T  50119 accagtcttcctttttcttttcatttagatcttcatcatatggaatgtagtttccat 50063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 96; Significance: 6e-47; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 609916 - 609709
Alignment:
Q  18 gtctttttgttgaaataaaatcttttggaggaaaactacttttgacttgttttcccttgatacatcattcacatattttatctttttcgaagttgatctt 117  Q
    |||||||||||||||| || |||||||||||||||||||||||||||||||||||  |||  |||  ||||||||||||||| || ||  |||| |||||    
T  609916 gtctttttgttgaaatgaattcttttggaggaaaactacttttgacttgttttcctctgacgcatgcttcacatattttatccttctcatagttaatctt 609817  T
Q  118 aggaagtcctctcactagaacaagtcttgatattttttagattgtttccatacttatatgtccaacccttttgtgccaaatccatttgtctttttcaaga 217  Q
    |||||||||||| |||| | ||||| |||||||| |  | |||||||||||||||||||| ||  ||||||| |||||||||||||| || ||||||||     
T  609816 aggaagtcctcttactaaatcaagttttgatattctggaaattgtttccatacttatatggcctgcccttttatgccaaatccatttatccttttcaagg 609717  T
Q  218 gatataaa 225  Q
    ||||||||    
T  609716 gatataaa 609709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 251 - 407
Target Start/End: Complemental strand, 607936 - 607780
Alignment:
Q  251 ttgcattcttgtattctatcaaattcttccctgcttaaagtcatggttagaaataatttagctttaaagtttaatagaacacgtttaccttcttcctctt 350  Q
    ||||||||||||| ||||||| ||||||||||||| || | |||||||||||||| |||||||||||| |||||||  |  || ||||||||||| |||     
T  607936 ttgcattcttgtactctatcatattcttccctgctcaacgccatggttagaaatagtttagctttaaaatttaataacatgcgcttaccttcttcttctg 607837  T
Q  351 accaatcttcctttttcttgacatttagatcttcatcatatgaaatgtaatttccat 407  Q
    |||| ||||||||||||||  ||||||||||||||||||||| |||||| |||||||    
T  607836 accagtcttcctttttcttttcatttagatcttcatcatatggaatgtagtttccat 607780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 161 - 235
Target Start/End: Original strand, 5388814 - 5388888
Alignment:
Q  161 gtttccatacttatatgtccaacccttttgtgccaaatccatttgtctttttcaagagatataaaataggattca 235  Q
    |||| ||| |||||||| ||| ||||||||||||| ||||||||||||||||||||||| |||||| | ||||||    
T  5388814 gttttcatgcttatatgaccagcccttttgtgccagatccatttgtctttttcaagagacataaaacaagattca 5388888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 161 - 235
Target Start/End: Complemental strand, 8504491 - 8504417
Alignment:
Q  161 gtttccatacttatatgtccaacccttttgtgccaaatccatttgtctttttcaagagatataaaataggattca 235  Q
    |||| ||| |||||||| ||| ||||||||||||| ||||||||||||||||||||||| |||||| | ||||||    
T  8504491 gttttcatgcttatatgaccagcccttttgtgccagatccatttgtctttttcaagagacataaaacaagattca 8504417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 161 - 235
Target Start/End: Original strand, 9542139 - 9542213
Alignment:
Q  161 gtttccatacttatatgtccaacccttttgtgccaaatccatttgtctttttcaagagatataaaataggattca 235  Q
    |||| ||| |||||||| ||| ||||||||||||| ||||||||||||||||||||||| |||||| | ||||||    
T  9542139 gttttcatgcttatatgaccagcccttttgtgccagatccatttgtctttttcaagagacataaaacaagattca 9542213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 161 - 235
Target Start/End: Complemental strand, 26306998 - 26306924
Alignment:
Q  161 gtttccatacttatatgtccaacccttttgtgccaaatccatttgtctttttcaagagatataaaataggattca 235  Q
    |||| ||| |||||||| ||| ||||||||||||| ||||||||||||||||||||||| |||||| | ||||||    
T  26306998 gttttcatgcttatatgaccagcccttttgtgccagatccatttgtctttttcaagagacataaaacaagattca 26306924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 161 - 235
Target Start/End: Original strand, 26359820 - 26359894
Alignment:
Q  161 gtttccatacttatatgtccaacccttttgtgccaaatccatttgtctttttcaagagatataaaataggattca 235  Q
    |||| ||| |||||||| ||| ||||||||||||| ||||||||||||||||||||||| |||||| | ||||||    
T  26359820 gttttcatgcttatatgaccagcccttttgtgccagatccatttgtctttttcaagagacataaaacaagattca 26359894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 161 - 235
Target Start/End: Complemental strand, 32101822 - 32101748
Alignment:
Q  161 gtttccatacttatatgtccaacccttttgtgccaaatccatttgtctttttcaagagatataaaataggattca 235  Q
    |||| ||| |||||||| ||| ||||||||||||| ||||||||||||||||||||||| |||||| | ||||||    
T  32101822 gttttcatgcttatatgaccagcccttttgtgccagatccatttgtctttttcaagagacataaaacaagattca 32101748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 161 - 235
Target Start/End: Complemental strand, 44900741 - 44900667
Alignment:
Q  161 gtttccatacttatatgtccaacccttttgtgccaaatccatttgtctttttcaagagatataaaataggattca 235  Q
    |||| ||| |||||||| ||| ||||||||||||| ||||||||||||||||||||||| |||||| | ||||||    
T  44900741 gttttcatgcttatatgaccagcccttttgtgccagatccatttgtctttttcaagagacataaaacaagattca 44900667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 161 - 235
Target Start/End: Complemental strand, 46500556 - 46500482
Alignment:
Q  161 gtttccatacttatatgtccaacccttttgtgccaaatccatttgtctttttcaagagatataaaataggattca 235  Q
    |||| ||| |||||||| ||| ||||||||||||| ||||||||||||||||||||||| |||||| | ||||||    
T  46500556 gttttcatgcttatatgaccagcccttttgtgccagatccatttgtctttttcaagagacataaaacaagattca 46500482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 119 - 216
Target Start/End: Complemental strand, 15178617 - 15178520
Alignment:
Q  119 ggaagtcctctcactagaacaagtcttgatattttttagattgtttccatacttatatgtccaacccttttgtgccaaatccatttgtctttttcaag 216  Q
    ||||||||||| || ||| | ||| | || |||||| | || |||| |||||||||||||||| | |||||||||||||||||||| |||||||||||    
T  15178617 ggaagtcctcttacaagatccagtttggagatttttgaaatagttttcatacttatatgtccagctcttttgtgccaaatccatttatctttttcaag 15178520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 161 - 226
Target Start/End: Original strand, 16139083 - 16139148
Alignment:
Q  161 gtttccatacttatatgtccaacccttttgtgccaaatccatttgtctttttcaagagatataaaa 226  Q
    |||| ||| |||||||| ||| ||||||||||||| ||||||||||||||||||||||| ||||||    
T  16139083 gttttcatgcttatatgaccagcccttttgtgccagatccatttgtctttttcaagagacataaaa 16139148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 161 - 214
Target Start/End: Complemental strand, 6537919 - 6537866
Alignment:
Q  161 gtttccatacttatatgtccaacccttttgtgccaaatccatttgtctttttca 214  Q
    |||| ||| |||||||| ||| ||||||||||||| ||||||||||||||||||    
T  6537919 gttttcatgcttatatgaccagcccttttgtgccagatccatttgtctttttca 6537866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 89; Significance: 9e-43; HSPs: 3)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 17 - 225
Target Start/End: Complemental strand, 85007 - 84799
Alignment:
Q  17 ggtctttttgttgaaataaaatcttttggaggaaaactacttttgacttgttttcccttgatacatcattcacatattttatctttttcgaagttgatct 116  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||  ||| ||||  ||||||||||||||| || ||  |||| ||||    
T  85007 ggtctttttgttgaaataaattcttttgaaggaaaactacttttgacttgttttcctctgacacatgcttcacatattttatccttctcatagttaatct 84908  T
Q  117 taggaagtcctctcactagaacaagtcttgatattttttagattgtttccatacttatatgtccaacccttttgtgccaaatccatttgtctttttcaag 216  Q
    |||||||| |||  |||| | ||||| |||||||| |  | |||||||||||||||||||| ||  ||||||| |||||||| ||||| || ||||||||    
T  84907 taggaagtactcctactaaatcaagttttgatattctggaaattgtttccatacttatatggcctgcccttttatgccaaatgcatttatccttttcaag 84808  T
Q  217 agatataaa 225  Q
     ||||||||    
T  84807 ggatataaa 84799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 241 - 407
Target Start/End: Complemental strand, 83035 - 82869
Alignment:
Q  241 tttggcagtgttgcattcttgtattctatcaaattcttccctgcttaaagtcatggttagaaataatttagctttaaagtttaatagaacacgtttacct 340  Q
    ||||||| | ||||||||||||| ||||||| ||||||||||||| || | |||||||||||||| |||||||||||| |||||||| |  || ||||||    
T  83035 tttggcatttttgcattcttgtactctatcatattcttccctgctcaatgccatggttagaaatagtttagctttaaaatttaatagcatgcgcttacct 82936  T
Q  341 tcttcctcttaccaatcttcctttttcttgacatttagatcttcatcatatgaaatgtaatttccat 407  Q
    ||||| ||| |||| ||||||||||||||  ||||||||||| ||||||||| |||||| |||||||    
T  82935 tcttcttctgaccagtcttcctttttcttttcatttagatctacatcatatggaatgtagtttccat 82869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 89 - 216
Target Start/End: Original strand, 101165 - 101292
Alignment:
Q  89 catattttatctttttcgaagttgatcttaggaagtcctctcactagaacaagtcttgatattttttagattgtttccatacttatatgtccaacccttt 188  Q
    |||||| |||||||||| || |  || || ||||||||||| || ||| | ||| | || |||||| | || |||| |||||||||||||||| | ||||    
T  101165 catattctatctttttcaaaatcaatttttggaagtcctcttacaagatccagtttggagatttttgaaatagttttcatacttatatgtccagctcttt 101264  T
Q  189 tgtgccaaatccatttgtctttttcaag 216  Q
    |||||||||||||||| |||||||||||    
T  101265 tgtgccaaatccatttatctttttcaag 101292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 89; Significance: 9e-43; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 240 - 412
Target Start/End: Complemental strand, 24052655 - 24052483
Alignment:
Q  240 ttttggcagtgttgcattcttgtattctatcaaattcttccctgcttaaagtcatggttagaaataatttagctttaaagtttaatagaacacgtttacc 339  Q
    |||||||| | ||||||||||||| ||||||| |||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||| |||||||    
T  24052655 ttttggcatttttgcattcttgtactctatcatattcttccatgcttaaagtcattgttagaaataatttagctttaaaatttaatagaacatgtttacc 24052556  T
Q  340 ttcttcctcttaccaatcttcctttttcttgacatttagatcttcatcatatgaaatgtaatttccatcttct 412  Q
    ||| || | | |||| ||||  | ||| |||| |||| ||||||||||||||| |||||||||| ||||||||    
T  24052555 ttcctcttttgaccagtcttattgttttttgatatttcgatcttcatcatatggaatgtaatttgcatcttct 24052483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 161 - 235
Target Start/End: Complemental strand, 16158325 - 16158251
Alignment:
Q  161 gtttccatacttatatgtccaacccttttgtgccaaatccatttgtctttttcaagagatataaaataggattca 235  Q
    |||| ||| ||||| || ||| ||||||||||||| ||||||||||||||||||||||| |||||| | ||||||    
T  16158325 gttttcatgcttatgtgaccagcccttttgtgccagatccatttgtctttttcaagagacataaaacaagattca 16158251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0500 (Bit Score: 86; Significance: 6e-41; HSPs: 2)
Name: scaffold0500
Description:

Target: scaffold0500; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 20 - 225
Target Start/End: Complemental strand, 9125 - 8920
Alignment:
Q  20 ctttttgttgaaataaaatcttttggaggaaaactacttttgacttgttttcccttgatacatcattcacatattttatctttttcgaagttgatcttag 119  Q
    |||||||||||||| ||||||||||||||||| |||||||| |||||||||||  |||  |||  ||||||||| ||||  || ||  |||| |||||||    
T  9125 ctttttgttgaaatgaaatcttttggaggaaagctacttttaacttgttttcctctgacgcatgcttcacatatcttattcttctcctagttaatcttag 9026  T
Q  120 gaagtcctctcactagaacaagtcttgatattttttagattgtttccatacttatatgtccaacccttttgtgccaaatccatttgtctttttcaagaga 219  Q
    |||||||||| |||| | ||||| |||||||| |  | |||||||||||||||||||| ||| ||||||| |||||||||||||| || |||||||| ||    
T  9025 gaagtcctcttactaaatcaagttttgatattctagaaattgtttccatacttatatggccatcccttttatgccaaatccatttatccttttcaaggga 8926  T
Q  220 tataaa 225  Q
    ||||||    
T  8925 tataaa 8920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0500; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 241 - 407
Target Start/End: Complemental strand, 5068 - 4902
Alignment:
Q  241 tttggcagtgttgcattcttgtattctatcaaattcttccctgcttaaagtcatggttagaaataatttagctttaaagtttaatagaacacgtttacct 340  Q
    ||||||| | ||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||| |||||||||||| |||||||  |  || ||||||    
T  5068 tttggcatttttgcattcttgtactctatcatattcttccctgctcaaagtcatggttagaaatagtttagctttaaaatttaataacatgcgcttacct 4969  T
Q  341 tcttcctcttaccaatcttcctttttcttgacatttagatcttcatcatatgaaatgtaatttccat 407  Q
    ||||| ||| |||||||||||||||||||  | || |||||||||||||||| ||| || |||||||    
T  4968 tcttcgtctgaccaatcttcctttttcttttcgttcagatcttcatcatatggaatatagtttccat 4902  T

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Target: chr2 (Bit Score: 83; Significance: 4e-39; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 20 - 226
Target Start/End: Complemental strand, 24992235 - 24992029
Alignment:
Q  20 ctttttgttgaaataaaatcttttggaggaaaactacttttgacttgttttcccttgatacatcattcacatattttatctttttcgaagttgatcttag 119  Q
    ||||||||| |||| || ||||| |||||||||||||||||||||||||||||  |||  |||  ||||||||||||||| || ||  |||| |||||||    
T  24992235 ctttttgttaaaatgaattctttgggaggaaaactacttttgacttgttttcctctgacgcatgcttcacatattttatccttctcatagttaatcttag 24992136  T
Q  120 gaagtcctctcactagaacaagtcttgatattttttagattgtttccatacttatatgtccaacccttttgtgccaaatccatttgtctttttcaagaga 219  Q
    |||||||||| |||| | ||||| |||||||| |  | |||||||||||||||||||| ||  ||||||| |||||||||||||| ||  ||||||| ||    
T  24992135 gaagtcctcttactaaatcaagttttgatattctggaaattgtttccatacttatatggcctgcccttttatgccaaatccatttatccctttcaaggga 24992036  T
Q  220 tataaaa 226  Q
    |||||||    
T  24992035 tataaaa 24992029  T

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Target: chr2; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 241 - 407
Target Start/End: Complemental strand, 24990458 - 24990292
Alignment:
Q  241 tttggcagtgttgcattcttgtattctatcaaattcttccctgcttaaagtcatggttagaaataatttagctttaaagtttaatagaacacgtttacct 340  Q
    ||||||| | ||||||||||||| ||||||| |||||||||||||||| | |||||||||||||| |||| ||||||| |||||||  |  || ||||||    
T  24990458 tttggcatttttgcattcttgtactctatcatattcttccctgcttaacgccatggttagaaatagtttaactttaaaatttaataacatgcgcttacct 24990359  T
Q  341 tcttcctcttaccaatcttcctttttcttgacatttagatcttcatcatatgaaatgtaatttccat 407  Q
    ||||| ||| |||| ||||||||||||||  ||||||||||||||||||||| ||| || |||||||    
T  24990358 tcttcttctgaccagtcttcctttttcttttcatttagatcttcatcatatggaatatagtttccat 24990292  T

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Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 49 - 215
Target Start/End: Complemental strand, 1794136 - 1793970
Alignment:
Q  49 aaaactacttttgacttgttttcc-cttgatacatcattcacatattttatctttttcgaagttgatcttaggaagtcctctcactagaacaagtcttga 147  Q
    |||||||||||||||||||||||| |||| | |||  |||||| ||||||||||||||  |  | || || ||||| ||||| |||||| |||||   ||    
T  1794136 aaaactacttttgacttgttttcctcttg-tgcatgcttcacagattttatctttttcataacttatttttggaagccctctaactagatcaagttggga 1794038  T
Q  148 tattttttagattgtttccatacttatatgtccaacccttttgtgccaaatccatttgtctttttcaa 215  Q
     |||||| | || |||| |||||||| ||||||| | |||||||||||||||||||||||||||||||    
T  1794037 aatttttgaaatagttttcatacttacatgtccagctcttttgtgccaaatccatttgtctttttcaa 1793970  T

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Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 161 - 235
Target Start/End: Original strand, 9510663 - 9510737
Alignment:
Q  161 gtttccatacttatatgtccaacccttttgtgccaaatccatttgtctttttcaagagatataaaataggattca 235  Q
    |||| ||| |||||||| ||| ||||||||||||| ||||||||||||||||||||||| |||||| | ||||||    
T  9510663 gttttcatgcttatatgaccagcccttttgtgccagatccatttgtctttttcaagagacataaaacaagattca 9510737  T

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Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 161 - 235
Target Start/End: Complemental strand, 18654660 - 18654586
Alignment:
Q  161 gtttccatacttatatgtccaacccttttgtgccaaatccatttgtctttttcaagagatataaaataggattca 235  Q
    |||| ||| |||||||| ||| ||||||||||||| ||||||||||||||||||||||| |||||| | ||||||    
T  18654660 gttttcatgcttatatgaccagcccttttgtgccagatccatttgtctttttcaagagacataaaacaagattca 18654586  T

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Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 161 - 235
Target Start/End: Complemental strand, 22905587 - 22905513
Alignment:
Q  161 gtttccatacttatatgtccaacccttttgtgccaaatccatttgtctttttcaagagatataaaataggattca 235  Q
    |||| |||||||||||| ||| | |||||||||||||||||||| |||||||||||||| |||||| | ||||||    
T  22905587 gttttcatacttatatgaccagctcttttgtgccaaatccatttatctttttcaagagaaataaaacatgattca 22905513  T

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Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 161 - 235
Target Start/End: Original strand, 27166879 - 27166953
Alignment:
Q  161 gtttccatacttatatgtccaacccttttgtgccaaatccatttgtctttttcaagagatataaaataggattca 235  Q
    |||| |||||||||||| ||| | |||||||||||||||||||| |||||||||||||| |||||| | ||||||    
T  27166879 gttttcatacttatatgaccagctcttttgtgccaaatccatttatctttttcaagagaaataaaacatgattca 27166953  T

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Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 161 - 235
Target Start/End: Complemental strand, 45017792 - 45017718
Alignment:
Q  161 gtttccatacttatatgtccaacccttttgtgccaaatccatttgtctttttcaagagatataaaataggattca 235  Q
    |||| ||| |||||||| ||| ||||||||||||| ||||||||||||||||||||||| |||||| | ||||||    
T  45017792 gttttcatgcttatatgaccagcccttttgtgccagatccatttgtctttttcaagagacataaaacaagattca 45017718  T

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Target: scaffold1922 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: scaffold1922
Description:

Target: scaffold1922; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 13 - 99
Target Start/End: Complemental strand, 373 - 287
Alignment:
Q  13 aaggggtctttttgttgaaataaaatcttttggaggaaaactacttttgacttgttttcccttgatacatcattcacatattttatc 99  Q
    |||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||| ||| ||||| |||||    
T  373 aaggggtcttttcgttgaaataaaatcttttggatgaaaactacttttaacttgttttcccttgacacatccttcccatatcttatc 287  T

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Target: scaffold0142 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0142
Description:

Target: scaffold0142; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 161 - 237
Target Start/End: Original strand, 33800 - 33876
Alignment:
Q  161 gtttccatacttatatgtccaacccttttgtgccaaatccatttgtctttttcaagagatataaaataggattcaac 237  Q
    |||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||| | ||||||||    
T  33800 gttttcatacttatatgaccaacccttttgtgccaaatccatttatctttttcaagagacataaaacatgattcaac 33876  T

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Target: scaffold0141 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 161 - 225
Target Start/End: Complemental strand, 29386 - 29322
Alignment:
Q  161 gtttccatacttatatgtccaacccttttgtgccaaatccatttgtctttttcaagagatataaa 225  Q
    |||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||    
T  29386 gttttcatacttatatgaccagcccttttgtgccaaatccatttgtctttttcaagagacataaa 29322  T

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Target: scaffold0254 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0254
Description:

Target: scaffold0254; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 170 - 235
Target Start/End: Original strand, 4477 - 4542
Alignment:
Q  170 cttatatgtccaacccttttgtgccaaatccatttgtctttttcaagagatataaaataggattca 235  Q
    |||||||| ||| ||||||||||||| ||||||||||||||||||||||| |||||| | ||||||    
T  4477 cttatatgaccagcccttttgtgccagatccatttgtctttttcaagagacataaaacaagattca 4542  T

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Target: scaffold0611 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0611
Description:

Target: scaffold0611; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 183 - 235
Target Start/End: Complemental strand, 1414 - 1362
Alignment:
Q  183 cccttttgtgccaaatccatttgtctttttcaagagatataaaataggattca 235  Q
    ||||||||||||| ||||||||||||||||||| ||| |||||||||||||||    
T  1414 cccttttgtgccagatccatttgtctttttcaatagacataaaataggattca 1362  T

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Target: scaffold0313 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0313
Description:

Target: scaffold0313; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 161 - 219
Target Start/End: Complemental strand, 12999 - 12941
Alignment:
Q  161 gtttccatacttatatgtccaacccttttgtgccaaatccatttgtctttttcaagaga 219  Q
    |||| |||||||||||| ||| | |||||||||||||||||||| ||||||||||||||    
T  12999 gttttcatacttatatgaccagctcttttgtgccaaatccatttatctttttcaagaga 12941  T

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Target: scaffold0058 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 161 - 235
Target Start/End: Original strand, 51482 - 51556
Alignment:
Q  161 gtttccatacttatatgtccaacccttttgtgccaaatccatttgtctttttcaagagatataaaataggattca 235  Q
    |||| ||| |||||||| ||| ||||||||||||| ||||||||||||||||||| ||| |||||  ||||||||    
T  51482 gttttcatgcttatatgaccagcccttttgtgccagatccatttgtctttttcaatagacataaagcaggattca 51556  T

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Target: scaffold0003 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 161 - 219
Target Start/End: Complemental strand, 148454 - 148396
Alignment:
Q  161 gtttccatacttatatgtccaacccttttgtgccaaatccatttgtctttttcaagaga 219  Q
    |||| |||||||||||| ||| | |||||||||||||||||||| ||||||||||||||    
T  148454 gttttcatacttatatgaccagctcttttgtgccaaatccatttatctttttcaagaga 148396  T

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Target: scaffold0163 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 254 - 323
Target Start/End: Complemental strand, 12372 - 12303
Alignment:
Q  254 cattcttgtattctatcaaattcttccctgcttaaag-tcatggttagaaataatttagctttaaagttta 323  Q
    ||||||| |||||||||| ||||||||||||||||||  ||| ||||||||||||| ||||||| ||||||    
T  12372 cattcttctattctatcatattcttccctgcttaaagcacat-gttagaaataattgagctttagagttta 12303  T

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Target: scaffold0163; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 254 - 323
Target Start/End: Complemental strand, 16916 - 16847
Alignment:
Q  254 cattcttgtattctatcaaattcttccctgcttaaag-tcatggttagaaataatttagctttaaagttta 323  Q
    ||||||| |||||||||| ||||||||||||||||||  ||| ||||||||||||| ||||||| ||||||    
T  16916 cattcttctattctatcatattcttccctgcttaaagcacat-gttagaaataattgagctttagagttta 16847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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