View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1596_low_31 (Length: 422)

Name: NF1596_low_31
Description: NF1596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1596_low_31
NF1596_low_31
[»] chr3 (1 HSPs)
chr3 (12-405)||(19665296-19665686)
[»] chr1 (9 HSPs)
chr1 (21-402)||(48653134-48653512)
chr1 (22-405)||(11547246-11547626)
chr1 (22-299)||(48618046-48618320)
chr1 (71-326)||(48628930-48629184)
chr1 (171-324)||(48661716-48661866)
chr1 (149-324)||(48667289-48667461)
chr1 (72-402)||(48656633-48656960)
chr1 (133-299)||(48585453-48585616)
chr1 (133-267)||(48640026-48640160)
[»] chr8 (2 HSPs)
chr8 (77-390)||(27228237-27228553)
chr8 (77-405)||(27224046-27224365)
[»] chr2 (1 HSPs)
chr2 (93-261)||(44044493-44044661)


Alignment Details
Target: chr3 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 12 - 405
Target Start/End: Complemental strand, 19665686 - 19665296
Alignment:
Q  12 atgaatatttactaaaaggatgtagaaaatccggtatttcgttatgtttaagagctacgaaaggtaattgagcatcaatataaggttctttttccgaagg 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19665686 atgaatatttactaaaaggatgtagaaaatccggtatttcgttatgtttaagagctacgaaaggtaattgagcatcaatataaggttctttttccgaagg 19665587  T
Q  112 gaaacgtaccgttttatgaaaatagttatagtaagcagtgaaaacagcagtggattgaatccataacaaagcagaaggaatatcatgttgagaagctaca 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19665586 gaaacgtaccgttttatgaaaatagttatagtaagcagtgaaaacagcagtggattgaatccataacaaagcagaaggaatatcatgttgagaagctaca 19665487  T
Q  212 tcacaaacccaaggaagaaaaggattgtttatgatacaagaaataggtttctttgactcatcatgatgattcttaatcatttgagaaagaaactttgtcc 311  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||   |||| |||||||||||||||||||||||||||||||||||    
T  19665486 tcacaaacccatggaagaaaaggattgtttatgatgcaagaaataggtttgtttgac---tcattatgattcttaatcatttgagaaagaaactttgtcc 19665390  T
Q  312 caacaagctcaagctgtgttgagtatccaccaagacttcttctaatgggatcatcatcttctaaaccatcatcaaagaagtgaaaagtgagaga 405  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  19665389 caacaagctcaagctgtgttgagtatccaccaagacttgctctaatgggatcatcatcttctaaaccatcatcaaagaagtggaaaatgagaga 19665296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 136; Significance: 8e-71; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 21 - 402
Target Start/End: Original strand, 48653134 - 48653512
Alignment:
Q  21 tactaaaaggatgtagaaaatccggtatttcgttatgtttaagagctacgaaaggtaattgagcatcaatataaggttctttttccgaagggaaacgtac 120  Q
    ||||||||||||| |||||||| || ||||| |||||||||||| |||| |||||||||||| ||||||||||||||||||  |  ||||||||||||||    
T  48653134 tactaaaaggatgcagaaaatctgggatttcattatgtttaagaactacaaaaggtaattgaacatcaatataaggttcttcatttgaagggaaacgtac 48653233  T
Q  121 cgttttatgaaaatagttatagtaagcagtgaaaacagcagtggattgaatccataacaaagcagaaggaatatcatgttgagaagctacatcacaaacc 220  Q
    |  ||| || |||||||| |||||||| || | |||||| |||||||||| |||||| ||| ||||||||||| |||||| |  ||||||||||||||||    
T  48653234 cagtttgtggaaatagttgtagtaagcggtaagaacagcggtggattgaacccataataaaacagaaggaataccatgttcatcagctacatcacaaacc 48653333  T
Q  221 caaggaagaaaaggattgtttatgatacaagaaataggtttctttgactcatcatgatgattcttaatcatttgagaaagaaactttgtcccaacaagct 320  Q
    ||||||||||| ||||| ||||||| ||| ||||| ||||| ||||||||| |   ||||||||| ||||||||||||| |||   | | |||||||| |    
T  48653334 caaggaagaaagggattatttatgagacatgaaattggtttgtttgactcagc---atgattcttgatcatttgagaaacaaagggttttccaacaagtt 48653430  T
Q  321 caagctgtgttgagtatccaccaagacttcttctaatgggatcatcatcttctaaaccatcatcaaagaagtgaaaagtgag 402  Q
      ||||||| |  ||| |||  || |  || |||||| ||||||||||||||||||| |||||||||||| | |||||||||    
T  48653431 tgagctgtgctatgtagccagtaatatctcctctaataggatcatcatcttctaaacaatcatcaaagaactcaaaagtgag 48653512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 22 - 405
Target Start/End: Original strand, 11547246 - 11547626
Alignment:
Q  22 actaaaaggatgtagaaaatccggtatttcgttatgtttaagagctacgaaaggtaattgagcatcaatataaggttctttttccgaagggaaacgtacc 121  Q
    |||||||||||| |||||||| || ||||| || | ||||||  ||   |||||||||||| ||||||||||||||||||||||| |||| ||| |||||    
T  11547246 actaaaaggatgaagaaaatctgggatttcattgtatttaaggacttgaaaaggtaattgaacatcaatataaggttctttttccaaaggaaaatgtacc 11547345  T
Q  122 gttttatgaaaatagttatagtaagcagtgaaaacagcagtggattgaatccataacaaagcagaaggaatatcatgttgagaagctacatcacaaaccc 221  Q
      ||| |  |||||||||||||||||||  ||||| ||||||||||||| |||||| ||| ||||||||||| |||||| |  |||||||||||||||||    
T  11547346 agtttgttgaaatagttatagtaagcagcaaaaactgcagtggattgaacccataataaaacagaaggaataccatgttcatgagctacatcacaaaccc 11547445  T
Q  222 aaggaagaaaaggattgtttatgatacaagaaataggtttctttgactcatcatgatgattcttaatcatttgagaaagaaactttgtcccaacaagctc 321  Q
    |||||| ||||||||||||||||||||||||||| ||||| ||||||||| |   ||||||||| ||||||||||| | |||   | |||||| ||| |     
T  11547446 aaggaacaaaaggattgtttatgatacaagaaattggtttgtttgactcaac---atgattcttgatcatttgagacaaaaaaggtttcccaaaaagttt 11547542  T
Q  322 aagctgtgttgagtatccaccaagacttcttctaatgggatcatcatcttctaaaccatcatcaaagaagtgaaaagtgagaga 405  Q
     || |||  |  ||| |||| |||| ||   ||||| ||||||||||||| |||||||||||||||||| | ||||||||||||    
T  11547543 tagttgttctatgtagccacaaagatttgccctaataggatcatcatcttgtaaaccatcatcaaagaactcaaaagtgagaga 11547626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 22 - 299
Target Start/End: Complemental strand, 48618320 - 48618046
Alignment:
Q  22 actaaaaggatgtagaaaatccggtatttcgttatgtttaagagctacgaaaggtaattgagcatcaatataaggttctttttccgaagggaaacgtacc 121  Q
    |||||||||||| |||||||| || ||||| || | ||||||| ||   |||||||||||| ||||||||||||||||| |||  |||||||||||||||    
T  48618320 actaaaaggatgaagaaaatctgggatttcattgtatttaagaacttgaaaaggtaattgaacatcaatataaggttctgtttgtgaagggaaacgtacc 48618221  T
Q  122 gttttatgaaaatagttatagtaagcagtgaaaacagcagtggattgaatccataacaaagcagaaggaatatcatgttgagaagctacatcacaaaccc 221  Q
      ||| || |||||||||||||||||||  ||||||||||| |||||||||||||||||||||||||||||| |||||| |  |||||||||||||||||    
T  48618220 agtttgtggaaatagttatagtaagcagaaaaaacagcagttgattgaatccataacaaagcagaaggaataccatgttcatcagctacatcacaaaccc 48618121  T
Q  222 aaggaagaaaaggattgtttatgatacaagaaataggtttctttgactcatcatgatgattcttaatcatttgagaaa 299  Q
    | |||| ||||||||||||||||||||| ||||  ||||| |||||   ||||  ||||||||| |||||||||||||    
T  48618120 atggaacaaaaggattgtttatgatacatgaaaatggtttgtttga---atcagcatgattcttgatcatttgagaaa 48618046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 71 - 326
Target Start/End: Original strand, 48628930 - 48629184
Alignment:
Q  71 aaaggtaattgagcatcaatataaggttctttttccgaagggaaacgtaccgttttatgaaaatagttatagtaagcagtgaaaacagcagtggattgaa 170  Q
    ||||| || ||| ||||||||||||||||| |||| ||||| ||| ||||   ||| || | ||||||||||||||  | |||||||||| | || | |     
T  48628930 aaaggcaaatgaacatcaatataaggttctgtttctgaaggaaaaggtacaagtttgtggacatagttatagtaagtggcgaaaacagcactagaattat 48629029  T
Q  171 tccataacaaagcagaaggaatatcatgttgagaagctacatcacaaacccaaggaagaaaaggattgtttatgatacaagaaataggtttctttgactc 270  Q
    ||||| | |||||||||||||| ||||||| | |||||||||| |||||||| |||||||||||||||| ||||||||| ||||| |||||  ||||       
T  48629030 tccatgataaagcagaaggaatgtcatgttcaaaagctacatcgcaaacccatggaagaaaaggattgtatatgatacatgaaattggtttacttga--- 48629126  T
Q  271 atcatgatgattcttaatcattt--gagaaagaaactttgtcccaacaagctcaagct 326  Q
    ||||  ||||||||| |||||||  || ||| |||||   ||||||||||||||||||    
T  48629127 atcagcatgattcttgatcattttagaaaaaaaaactgcctcccaacaagctcaagct 48629184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 171 - 324
Target Start/End: Original strand, 48661716 - 48661866
Alignment:
Q  171 tccataacaaagcagaaggaatatcatgttgagaagctacatcacaaacccaaggaagaaaaggattgtttatgatacaagaaataggtttctttgactc 270  Q
    ||||||| ||||||||||||||||  |||| | |||||| |||||||||||| |||||||| ||||||||||||| ||| ||||| ||||| |||||       
T  48661716 tccataataaagcagaaggaatattgtgttcaaaagctatatcacaaacccatggaagaaatggattgtttatgacacatgaaattggtttgtttga--- 48661812  T
Q  271 atcatgatgattcttaatcatttgagaaagaaactttgtcccaacaagctcaag 324  Q
    ||||  ||||||||| ||||||||||||| ||||| | |||||| | |||||||    
T  48661813 atcagcatgattcttgatcatttgagaaacaaactgtctcccaatacgctcaag 48661866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 149 - 324
Target Start/End: Original strand, 48667289 - 48667461
Alignment:
Q  149 gtgaaaacagcagtggattgaatccataacaaagcagaaggaatatcatgttgagaagctacatcacaaacccaaggaagaaaaggattgtttatgatac 248  Q
    |||||||||||| | || | | ||||||||||||||||||||||||  |||| | |||||| ||||| |||||| |||| |||||| |||||||| ||||    
T  48667289 gtgaaaacagcactagaattagtccataacaaagcagaaggaatattgtgttcaaaagctatatcactaacccatggaaaaaaagggttgtttataatac 48667388  T
Q  249 aagaaataggtttctttgactcatcatgatgattcttaatcatttgagaaagaaactttgtcccaacaagctcaag 324  Q
    | ||||| ||||| || ||   ||||  ||||||||| ||||||||||||| ||| | | ||||||||||||||||    
T  48667389 atgaaattggtttgttcga---atcagcatgattctttatcatttgagaaataaattgtctcccaacaagctcaag 48667461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 72 - 402
Target Start/End: Original strand, 48656633 - 48656960
Alignment:
Q  72 aaggtaattgagcatcaatataaggttctttttccgaagggaaacgtaccgttttatgaaaatagttatagtaagcagtgaaaacagcagtggattgaat 171  Q
    |||| |||||| |||||||| |||||||| |||  ||||||||| | |||  ||| || |||||||||||||||  ||||||||||||| | |||| | |    
T  48656633 aaggcaattgaacatcaatacaaggttctgtttttgaagggaaaggcaccagtttgtggaaatagttatagtaacaagtgaaaacagcactagattcatt 48656732  T
Q  172 ccataacaaagcagaaggaatatcatgttgagaagctacatcacaaacccaaggaa-gaaaaggattgtttatgatacaagaaataggtttctttgactc 270  Q
      | || | |||| ||||||| |  ||||  |  ||||||||||||||||| | || ||||| | ||||||||||| |||||||| ||| | ||||||||    
T  48656733 aaacaaaatagcaaaaggaattttgtgttctgtggctacatcacaaacccatgaaatgaaaatg-ttgtttatgatgcaagaaattggtgtttttgactc 48656831  T
Q  271 atcatgatgattcttaatcatttgagaaagaaactttgtcccaacaagctcaagctgtgttgagtatccaccaagacttcttctaatgggatcatcatct 370  Q
    | ||||||   | || |||| ||| |||| | |   | |||| ||| |||||||||||| || |||  ||||||||||| |||| ||||||||||| |||    
T  48656832 agcatgat---ttttgatcaattgggaaacatatagtttcccgacatgctcaagctgtgatgtgtagtcaccaagacttgttctcatgggatcatcgtct 48656928  T
Q  371 tctaaaccatcatcaaagaagtgaaaagtgag 402  Q
    |  |||||||| ||||| || | |||||||||    
T  48656929 ttcaaaccatcgtcaaataaatcaaaagtgag 48656960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 133 - 299
Target Start/End: Original strand, 48585453 - 48585616
Alignment:
Q  133 atagttatagtaagcagtgaaaacagcagtggattgaatccataacaaagcagaaggaatatcatgttgagaagctacatcacaaacccaaggaagaaaa 232  Q
    ||||||||||||||  ||||||||||||| ||| | | ||||| | ||| ||||||||||||  |||| |  ||| |||||||||||||| |||| ||||    
T  48585453 atagttatagtaagtggtgaaaacagcagcggaattagtccatgataaaacagaaggaatattgtgttcattagcaacatcacaaacccatggaaaaaaa 48585552  T
Q  233 ggattgtttatgatacaagaaataggtttctttgactcatcatgatgattcttaatcatttgagaaa 299  Q
      ||||||||||||||| ||||  ||||| ||| |   ||||  ||||||||| |||||||||||||    
T  48585553 taattgtttatgatacatgaaaatggtttgtttaa---atcagcatgattcttgatcatttgagaaa 48585616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 133 - 267
Target Start/End: Original strand, 48640026 - 48640160
Alignment:
Q  133 atagttatagtaagcagtgaaaacagcagtggattgaatccataacaaagcagaaggaatatcatgttgagaagctacatcacaaacccaaggaagaaaa 232  Q
    ||||||||||||||  ||||||||||||| ||| | | ||||| ||||| ||||||||||||  |||| |  ||| || ||||||||||| |||| ||||    
T  48640026 atagttatagtaagtggtgaaaacagcagcggaattagtccatgacaaaacagaaggaatattgtgttcattagcaacgtcacaaacccatggaaaaaaa 48640125  T
Q  233 ggattgtttatgatacaagaaataggtttctttga 267  Q
       |||||||||||||| ||||  ||||| |||||    
T  48640126 tagttgtttatgatacatgaaaatggtttgtttga 48640160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 123; Significance: 5e-63; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 77 - 390
Target Start/End: Original strand, 27228237 - 27228553
Alignment:
Q  77 aattgagcatcaatataaggttctttttccgaagggaaacgtaccgttttatgaaaatagttatagtaagcagtgaaaacagcagtggattgaatccata 176  Q
    |||||| |||||||||||||||||   | ||||||||||||||||  ||| |||||||||||||||||||| | ||||||||||  ||||||||||||||    
T  27228237 aattgaacatcaatataaggttctgcattcgaagggaaacgtaccagtttgtgaaaatagttatagtaagctgcgaaaacagcaccggattgaatccata 27228336  T
Q  177 acaaagcagaaggaatatcatgttgagaagctacatcacaaacccaaggaagaaaaggattgtttatgatacaagaaataggtttctttgactcatcatg 276  Q
    | |||||||||||||| ||  ||| || ||||||||||| |||||| ||||||||||||||||||||||||||||||||  || | ||||||||||||      
T  27228337 ataaagcagaaggaatctcgagttcagcagctacatcactaacccatggaagaaaaggattgtttatgatacaagaaatcagtgtatttgactcatcagc 27228436  T
Q  277 a---tgattcttaatcatttgagaaagaaactttgtcccaacaagctcaagctgtgttgagtatccaccaagacttcttctaatgggatcatcatcttct 373  Q
    |   |||||||| ||||||||||||||||||||| ||||||| ||||| || |||| | ||||   |  ||| |||  |||||||||||||||||||  |    
T  27228437 agcatgattcttgatcatttgagaaagaaactttttcccaacgagctcgaggtgtggtaagtaggtagtaaggcttgctctaatgggatcatcatctgat 27228536  T
Q  374 aaaccatcatcaaagaa 390  Q
    ||||| || ||||||||    
T  27228537 aaaccgtcttcaaagaa 27228553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 77 - 405
Target Start/End: Original strand, 27224046 - 27224365
Alignment:
Q  77 aattgagcatcaatataaggttctttttccgaagggaaacgtaccgttttatgaaaatagttatagtaagcagtgaaaacagcagtggattgaatccata 176  Q
    |||||| |||||||||| |||||||   |||||||||||||||||  ||| || ||||||||||||||||| | |||||||||| | ||||||| |||||    
T  27224046 aattgaacatcaatatatggttcttcaaccgaagggaaacgtaccagtttgtggaaatagttatagtaagcggcgaaaacagcactagattgaacccata 27224145  T
Q  177 acaaagcagaaggaatatcatgttgagaagctacatcacaaacccaaggaagaaaaggattgtttatgatacaagaaataggtttctttgactcatcatg 276  Q
    | |||||||||||||| |||| || |  |||||||||||||||||| |||||||||||||||||||||||||||||||| ||| | ||||||||          
T  27224146 ataaagcagaaggaatctcattttcaacagctacatcacaaacccatggaagaaaaggattgtttatgatacaagaaatcggtgtatttgactc------ 27224239  T
Q  277 atgattcttaatcatttgagaaagaaactttgtcccaacaagctcaagctgtgttgagtatccaccaagacttcttctaatgggatcatcatcttctaaa 376  Q
       |||||| ||||||||||||||||||| | ||||||||||||| || |||| | ||||   |    ||||| ||||||||||||||||||||  ||||    
T  27224240 ---attcttgatcatttgagaaagaaactgtttcccaacaagctcgaggtgtggtaagtaggtagtttgacttgttctaatgggatcatcatctgataaa 27224336  T
Q  377 ccatcatcaaagaagtgaaaagtgagaga 405  Q
    || ||||||||||| ||||| ||||||||    
T  27224337 ccgtcatcaaagaactgaaatgtgagaga 27224365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 93 - 261
Target Start/End: Complemental strand, 44044661 - 44044493
Alignment:
Q  93 aaggttctttttccgaagggaaacgtaccgttttatgaaaatagttatagtaagcagtgaaaacagcagtggattgaatccataacaaagcagaaggaat 192  Q
    |||||||| |||| |||||||||| ||||  ||| |||||||||||||||| |||||  |||||| ||||||||||||| |||||||||||| |||||||    
T  44044661 aaggttctgtttctgaagggaaacataccagtttgtgaaaatagttatagttagcagcaaaaacaacagtggattgaattcataacaaagcataaggaat 44044562  T
Q  193 atcatgttgagaagctacatcacaaacccaaggaagaaaaggattgtttatgatacaagaaataggttt 261  Q
    | |||||| |  |||||| ||||||||||| |||| ||||||| ||||||||||||| ||||| |||||    
T  44044561 accatgttcatcagctacgtcacaaacccatggaacaaaaggaatgtttatgatacatgaaattggttt 44044493  T

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