View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1596_low_32 (Length: 419)
Name: NF1596_low_32
Description: NF1596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1596_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 5 - 403
Target Start/End: Complemental strand, 30629733 - 30629335
Alignment:
| Q |
5 |
ggtagattattctcttccaactagattttcttcaaatacaagagtcacaaatcaaacttctgaccacttgtttaaagtactcgagttccttaccactcaa |
104 |
Q |
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| T |
30629733 |
ggtaaattcttctcttccaattagattttcttcaaatacaagagtcgtaaatcaaacttctgaccacttgtttaaagtactcgagttccttaccactcaa |
30629634 |
T |
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| Q |
105 |
gtctcaaaccaatcacaaattggtccctaatctacattataaccatagcataaaattaaaatgtttaatttacaacacaaaatcggaagaaagcataaac |
204 |
Q |
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| T |
30629633 |
atctcaaaccaatcacaagttggtccctaatctacattataaccatatcataaaattaaaatgtttaatatacaacacaaaatcggaagaaagcataaac |
30629534 |
T |
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| Q |
205 |
tcataagcaccttcaaactagaagttgaatacaaagatacacttattccaaatagagttctaagataggaaaaatcacttcacatgtaacacaattctct |
304 |
Q |
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| T |
30629533 |
tcataagcaccttcaaactagaagttgaatacaaagatacacttattccaaatagagttctaagataggaaaaatcacttcacatgtaacacaattctct |
30629434 |
T |
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| Q |
305 |
ctttcactgccttgctatctatataaaatatattcgcatatgatcacttagataatgacataatctctacaacatcatggccacataaccgcaatattt |
403 |
Q |
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| T |
30629433 |
ctttcactgccttgctatctatataaaatatattcgcatatgatcacttagataatgacataatctctacaacatcatggccacataaccgcaatattt |
30629335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 48 - 82
Target Start/End: Complemental strand, 34329631 - 34329597
Alignment:
| Q |
48 |
gtcacaaatcaaacttctgaccacttgtttaaagt |
82 |
Q |
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| T |
34329631 |
gtcacaaatcaaacatctgaccacttgtttaaagt |
34329597 |
T |
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