View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1596_low_33 (Length: 410)
Name: NF1596_low_33
Description: NF1596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1596_low_33 |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 90 - 394
Target Start/End: Complemental strand, 4712679 - 4712363
Alignment:
| Q |
90 |
ggcaaatagtccggtaactaaactcacacac--taaatgtgaagaacttgaacattgttgattagaatttgcgcttctacatatcaaatgtctcgcaact |
187 |
Q |
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| T |
4712679 |
ggcaaatagttcggtaactaaactcacacacactaaatgtgaagaacttgaacattgttgattagaatttgcgcttctacatatcaaatgtctcgcaact |
4712580 |
T |
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| Q |
188 |
ttttatcatttgaactgcgcttactcaaattaattacaaaaacaaaaatgcttgtttccatataatgcaaataatacatatatgtaacacatgttccact |
287 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4712579 |
ttttatcatttgaactgcgcttactcaaattaattacaaaaacaaaaatgcttgtttccatataatgcaaataatacatatatgtaacacatgttccact |
4712480 |
T |
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| Q |
288 |
tttcttac------nnnnnnntttaaatctttatcaataagag----atatacattagtagtataagttgtcaatgatcttgttcttaaagcttattgat |
377 |
Q |
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|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4712479 |
tttcttacaaaaaaaaaaaacaataaatctttatcaataagagatatatatacattagtagtataagttgtcaatgatcttgttcttaaagcttattgat |
4712380 |
T |
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| Q |
378 |
tcccgggaatttgagga |
394 |
Q |
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||||||||||||||||| |
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| T |
4712379 |
tcccgggaatttgagga |
4712363 |
T |
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