View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1596_low_35 (Length: 408)
Name: NF1596_low_35
Description: NF1596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1596_low_35 |
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Alignment Details
Target: chr7 (Bit Score: 131; Significance: 8e-68; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 259 - 389
Target Start/End: Original strand, 23751711 - 23751841
Alignment:
| Q |
259 |
tataaaagatatattcatatccttcccttttatctttcacaccaaacaaggatgaaatatttaaagatgttattcccggtggctaagcccgaaattaaac |
358 |
Q |
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| T |
23751711 |
tataaaagatatattcatatccttcccttttatctttcacaccaaacaaggatgaaatatttaaagatgttattcccggtggctaagcccgaaattaaac |
23751810 |
T |
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| Q |
359 |
atcaggggaccatgaaaagacgacaacattg |
389 |
Q |
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| T |
23751811 |
atcaggggaccatgaaaagacgacaacattg |
23751841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 8 - 118
Target Start/End: Original strand, 23751603 - 23751713
Alignment:
| Q |
8 |
ttatctattttattttataattttaaaattgtccttgctaatcatatcataaacttctattaccatctcttcacataagccaactctatccttctccaaa |
107 |
Q |
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||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23751603 |
ttatctattttattttataatttaaaaattttccttgctaatcatatcataaacttctattaccatctcttcacataagccaactctatccttctccaaa |
23751702 |
T |
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| Q |
108 |
ggccatcatat |
118 |
Q |
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| T |
23751703 |
ggccatcatat |
23751713 |
T |
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