View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1596_low_39 (Length: 394)

Name: NF1596_low_39
Description: NF1596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1596_low_39
NF1596_low_39
[»] chr4 (8 HSPs)
chr4 (1-394)||(28607149-28607542)
chr4 (1-376)||(28611911-28612286)
chr4 (1-68)||(14178646-14178713)
chr4 (1-68)||(14173892-14173959)
chr4 (1-70)||(11104425-11104491)
chr4 (359-394)||(14178331-14178366)
chr4 (317-377)||(11104127-11104185)
chr4 (1-67)||(44161543-44161608)
[»] chr1 (2 HSPs)
chr1 (73-376)||(34906753-34907056)
chr1 (1-73)||(34907089-34907161)
[»] chr2 (1 HSPs)
chr2 (2-376)||(8538832-8539204)
[»] chr6 (1 HSPs)
chr6 (228-376)||(2308757-2308905)
[»] chr7 (3 HSPs)
chr7 (1-158)||(37040769-37040927)
chr7 (7-76)||(15302891-15302960)
chr7 (1-72)||(12098956-12099025)
[»] chr8 (6 HSPs)
chr8 (59-311)||(17123887-17124139)
chr8 (1-73)||(12930626-12930698)
chr8 (1-73)||(12935372-12935444)
chr8 (317-394)||(12935061-12935136)
chr8 (245-311)||(17121733-17121801)
chr8 (317-376)||(12930333-12930390)
[»] chr3 (2 HSPs)
chr3 (301-377)||(51298522-51298598)
chr3 (5-66)||(51302118-51302179)
[»] chr5 (2 HSPs)
chr5 (1-76)||(42911332-42911408)
chr5 (8-76)||(29107223-29107291)


Alignment Details
Target: chr4 (Bit Score: 362; Significance: 0; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 394
Target Start/End: Original strand, 28607149 - 28607542
Alignment:
Q  1 caacactctatttttcttctcacacacttctacacacacagaagctttgtattctcacttctgcttcaatactttccttcaattccattgcctctattta 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||    
T  28607149 caacactctatttttcctctcacacacttctacacacacagaagctttgtattttcacttctgcttcgatgctttccttcaattccattgcctctattta 28607248  T
Q  101 taggggaaatgagccgtaagagttggatttggttcacacactcttacaccaaaagtcatggtattcaaagtgtgaaacttgaaatgaattgcaagccttc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||||||||||||||||||||||    
T  28607249 taggggaaatgagccgtaagagttggatttggttcacacactcttacaccaaaagtcatgacattcagagtgtgaaacttgaaatgaattgcaagccttc 28607348  T
Q  201 acacttttctgcacagcaagctatgcctagccatgtctctccaccgtaagctatatcatagctttcctatttgtagaaaaatgcatccttgcattaaata 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  28607349 acacttttctgcacagcaagctatgcctagccatgtctctccaccgtaagctataccatagctttcctatttgtagaaaaatgcatccttgcattaaata 28607448  T
Q  301 ggtagaagactatttacaattacttgtagtaattgtctttggctggaaacaatacccacacgtggtggggccaacaattctccccctccagcca 394  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28607449 ggtagaagactatttacaattacttgtagtaattgtctttggctggaaacaatacccacacgtggtggggccaacaattctccccctccagcca 28607542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 28611911 - 28612286
Alignment:
Q  1 caacactctatttttcttctcacacacttctacacacacagaagctttgtattctcacttctgcttcaatactttccttcaattccattgcctctattta 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||    
T  28611911 caacactctatttttcctctcacacacttctacacacacagaagctttgtattttcacttctgcttcgatgctttccttcaattccattgcctctattta 28612010  T
Q  101 taggggaaatgagccgtaagagttggatttggttcacacactcttacaccaaaagtcatggtattcaaagtgtgaaacttgaaatgaattgcaagccttc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||||||||||||||||||||||    
T  28612011 taggggaaatgagccgtaagagttggatttggttcacacactcttacaccaaaagtcatgacattcagagtgtgaaacttgaaatgaattgcaagccttc 28612110  T
Q  201 acacttttctgcacagcaagctatgcctagccatgtctctccaccgtaagctatatcatagctttcctatttgtagaaaaatgcatccttgcattaaata 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  28612111 acacttttctgcacagcaagctatgcctagccatgtctctccaccgtaagctataccatagctttcctatttgtagaaaaatgcatccttgcattaaata 28612210  T
Q  301 ggtagaagactatttacaattacttgtagtaattgtctttggctggaaacaatacccacacgtggtggggccaaca 376  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28612211 ggtagaagactatttacaattacttgtagtaattgtctttggctggaaacaatacccacacgtggtggggccaaca 28612286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 14178713 - 14178646
Alignment:
Q  1 caacactctatttttcttctcacacacttctacacacacagaagctttgtattctcacttctgcttca 68  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  14178713 caacactctatttttcctctcacacacttctacacacacagaagctttgtattttcacttctgcttca 14178646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 14173959 - 14173892
Alignment:
Q  1 caacactctatttttcttctcacacacttctacacacacagaagctttgtattctcacttctgcttca 68  Q
    |||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  14173959 caacactctatttttcctctcacacacttctacacacacagaaactttgtattttcacttctgcttca 14173892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 11104491 - 11104425
Alignment:
Q  1 caacactctatttttcttctcacacacttctacacacacagaagctttgtattctcacttctgcttcaat 70  Q
    |||||||||||||||  |||||||||||||||  |||| |||||||||||||| | ||||||||||||||    
T  11104491 caacactctattttttctctcacacacttcta--cacatagaagctttgtatt-tgacttctgcttcaat 11104425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 359 - 394
Target Start/End: Complemental strand, 14178366 - 14178331
Alignment:
Q  359 cacgtggtggggccaacaattctccccctccagcca 394  Q
    ||||||||||| ||||||||||||||||||||||||    
T  14178366 cacgtggtgggaccaacaattctccccctccagcca 14178331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 377
Target Start/End: Complemental strand, 11104185 - 11104127
Alignment:
Q  317 caattacttgtagtaattgtctttggctggaaacaatacccacacgtggtggggccaacaa 377  Q
    ||||| ||||||| ||||||||||||||||  |||  ||||||||||| ||||||||||||    
T  11104185 caattgcttgtagcaattgtctttggctgg--acataacccacacgtgatggggccaacaa 11104127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 44161608 - 44161543
Alignment:
Q  1 caacactctatttttcttctcacacacttctacacacacagaagctttgt-attctcacttctgcttc 67  Q
    |||||||||||| ||| |||||||||| |||  |||||||||||||||||  || |||||||||||||    
T  44161608 caacactctattattcctctcacacacctct--acacacagaagctttgtgtttttcacttctgcttc 44161543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 73 - 376
Target Start/End: Complemental strand, 34907056 - 34906753
Alignment:
Q  73 tttccttcaattccattgcctctatttataggggaaatgagccgtaagagttggatttggttcacacactcttacaccaaaagtcatggtattcaaagtg 172  Q
    |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||    
T  34907056 tttctttcaattctattgcctctatttataggggaaatgagccgtaagagttggatttggttcacacactcttacaccaaaagtcatgacattcagagtg 34906957  T
Q  173 tgaaacttgaaatgaattgcaagccttcacacttttctgcacagcaagctatgcctagccatgtctctccaccgtaagctatatcatagctttcctattt 272  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  34906956 tgaaacttgaaatgaattgcaagccttcacacttttctgcacagcaagctatgcctagccatgtctctccaccgtaagctataccatagctttcctattt 34906857  T
Q  273 gtagaaaaatgcatccttgcattaaataggtagaagactatttacaattacttgtagtaattgtctttggctggaaacaatacccacacgtggtggggcc 372  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34906856 gtagaaaaattcatccttgcattaaataggtagaagactatttacaattacttgtagtaattgtctttggctggaaacaatacccacacgtggtggggcc 34906757  T
Q  373 aaca 376  Q
    ||||    
T  34906756 aaca 34906753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 34907161 - 34907089
Alignment:
Q  1 caacactctatttttcttctcacacacttctacacacacagaagctttgtattctcacttctgcttcaatact 73  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  34907161 caacactctatttttcctctcacacacttctacacacacagaagctttgtattttcacttctgcttcaatact 34907089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 2 - 376
Target Start/End: Complemental strand, 8539204 - 8538832
Alignment:
Q  2 aacactctatttttcttctcacacacttctacacacacagaagctttgtattctcacttctgcttcaatactttccttcaattccattgcctctatttat 101  Q
    |||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||| ||||||||||||    
T  8539204 aacactatatttttcctctcacacacttctacacacacagaagctttgtattttcacttctgcttcgatgctttccttcaattccat-gcctctatttat 8539106  T
Q  102 aggggaaatgagccgtaagagttggatttggttcacacactcttacaccaaaagtcatggtattcaaagtgtgaaacttgaaatgaattgcaagccttca 201  Q
    ||||||||| |||| |||||||||||  | |||||||| ||||||||||||||||||||  ||||| ||||||||||||| |||||||||||||||||||    
T  8539105 aggggaaataagccataagagttggaaatagttcacac-ctcttacaccaaaagtcatgacattcagagtgtgaaacttggaatgaattgcaagccttca 8539007  T
Q  202 cacttttctgcacagcaagctatgcctagccatgtctctccaccgtaagctatatcatagctttcctatttgtagaaaaatgcatccttgcattaaatag 301  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||||      
T  8539006 cacttttctgcacagcaagctatgcctagccatgtctctccaccttaagctataccatagctttcctatttgtagaaaaatgcatcattgcattaaatga 8538907  T
Q  302 gtagaagactatttacaa-ttacttgtagtaattgtctttggctggaaacaatacccacacgtggtggggccaaca 376  Q
    ||||||||||| ||| || ||| || |||||||||||||||||||| |||| |||||||| |||||||||||||||    
T  8538906 gtagaagactagttataatttatttatagtaattgtctttggctgg-aacagtacccacatgtggtggggccaaca 8538832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 133; Significance: 5e-69; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 228 - 376
Target Start/End: Complemental strand, 2308905 - 2308757
Alignment:
Q  228 tagccatgtctctccaccgtaagctatatcatagctttcctatttgtagaaaaatgcatccttgcattaaataggtagaagactatttacaattacttgt 327  Q
    |||||||||||||||||||||||||||| ||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  2308905 tagccatgtctctccaccgtaagctataccatagttttcctatttatagaaaaatacatccttgcattaaataggtagaagactatttacaattacttgt 2308806  T
Q  328 agtaattgtctttggctggaaacaatacccacacgtggtggggccaaca 376  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2308805 agtaattgtctttggctggaaacaatacccacacgtggtggggccaaca 2308757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 111; Significance: 6e-56; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 37040769 - 37040927
Alignment:
Q  1 caacactctatttttcttctcacacacttctacacacacagaagctttgtattctcacttctgcttcaatactttccttcaattccattgcctctattta 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |  ||||| |||||||||    
T  37040769 caacactctatttttcctctcacacacttctacacacacagaagctttgtattttcacttctgcttcaatgctttccttcactatcattgtctctattta 37040868  T
Q  101 taggggaaatg-agccgtaagagttggatttggttcacacactcttacaccaaaagtca 158  Q
    || | |||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  37040869 taagagaaatgaagccgtaagagttggatttggttcacacactcttacactaaaagtca 37040927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 7 - 76
Target Start/End: Complemental strand, 15302960 - 15302891
Alignment:
Q  7 tctatttttcttctcacacacttctacacacacagaagctttgtattctcacttctgcttcaatactttc 76  Q
    |||||||||  |||||||||||||||||||||||||||||||||||| ||| ||||||||| || |||||    
T  15302960 tctatttttgctctcacacacttctacacacacagaagctttgtattttcaattctgcttcgatgctttc 15302891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 12099025 - 12098956
Alignment:
Q  1 caacactctatttttcttctcacacacttctacacacacagaagctttgtattctcacttctgcttcaatac 72  Q
    |||||||||||||||| | ||||| |||||||||  |||| || ||||||| | |||||||| |||||||||    
T  12099025 caacactctatttttcctttcacatacttctaca--cacaaaaactttgtagtttcacttctacttcaatac 12098956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 100; Significance: 2e-49; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 59 - 311
Target Start/End: Complemental strand, 17124139 - 17123887
Alignment:
Q  59 ttctgcttcaatactttccttcaattccattgcctctatttataggggaaatgagccgtaagagttggatttggttcacacactcttacaccaaaagtca 158  Q
    |||| |||| || |||||||||| | |||||| ||||||||||| |  |||  ||||||||||||| || || ||||||| | |||||||||||||||||    
T  17124139 ttctacttcgatgctttccttcattgccattgactctatttataaga-aaacaagccgtaagagtttgaattagttcaca-attcttacaccaaaagtca 17124042  T
Q  159 tggtattcaaagtgtgaaacttgaaatgaattgcaagccttcacacttttctgcacagcaagctatgcctagccatgtctctccaccgtaagctatatca 258  Q
    |   ||||||||||||||||||| |||||||||||| | |||||||||||||||  |||||| || ||||||||||| ||||||||| |||||||||  |    
T  17124041 taacattcaaagtgtgaaacttggaatgaattgcaaacattcacacttttctgctaagcaagataagcctagccatgcctctccaccttaagctatacta 17123942  T
Q  259 tagctttcctatttgtagaaa--aatgcatccttgcattaaataggtagaagact 311  Q
    ||| |||||||||||||||||  ||||| |||||||||||||||  |||||||||    
T  17123941 tagttttcctatttgtagaaaataatgcttccttgcattaaataaatagaagact 17123887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 12930698 - 12930626
Alignment:
Q  1 caacactctatttttcttctcacacacttctacacacacagaagctttgtattctcacttctgcttcaatact 73  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  12930698 caacactctatttttcctctcacacacttctacacacacagaagctttgtattttcacttctgcttcaatact 12930626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 12935444 - 12935372
Alignment:
Q  1 caacactctatttttcttctcacacacttctacacacacagaagctttgtattctcacttctgcttcaatact 73  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  12935444 caacactctatttttcctctcacacacttctacacacacagaagctttgtattttcacttctgcttcaatact 12935372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 317 - 394
Target Start/End: Complemental strand, 12935136 - 12935061
Alignment:
Q  317 caattacttgtagtaattgtctttggctggaaacaatacccacacgtggtggggccaacaattctccccctccagcca 394  Q
    ||||| ||||||| ||||||||||||||||| | ||  ||||||||||||||||||||||||||||||||||||||||    
T  12935136 caattgcttgtagcaattgtctttggctggacataa--cccacacgtggtggggccaacaattctccccctccagcca 12935061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 245 - 311
Target Start/End: Complemental strand, 17121801 - 17121733
Alignment:
Q  245 cgtaagctatatcatagctttcctatttgtaga--aaaatgcatccttgcattaaataggtagaagact 311  Q
    ||||||||||  |||| ||||||||||||||||  ||||||| |||||||||||||||  |||||||||    
T  17121801 cgtaagctatgccatatctttcctatttgtagaaaaaaatgcttccttgcattaaatacatagaagact 17121733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 376
Target Start/End: Complemental strand, 12930390 - 12930333
Alignment:
Q  317 caattacttgtagtaattgtctttggctggaaacaatacccacacgtggtggggccaaca 376  Q
    ||||| ||||||| ||||||||||||||||| | ||  ||||||||||||||||||||||    
T  12930390 caattgcttgtagcaattgtctttggctggacataa--cccacacgtggtggggccaaca 12930333  T

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Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 301 - 377
Target Start/End: Complemental strand, 51298598 - 51298522
Alignment:
Q  301 ggtagaagactatttacaattacttgtagtaattgtctttggctggaaacaatacccacacgtggtggggccaacaa 377  Q
    ||||||| ||||||| |||||||||||||||||||| ||||||  ||||||||| ||||||||||||||||||||||    
T  51298598 ggtagaaaactatttgcaattacttgtagtaattgtttttggccagaaacaatagccacacgtggtggggccaacaa 51298522  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 51302179 - 51302118
Alignment:
Q  5 actctatttttcttctcacacacttctacacacacagaagctttgtattctcacttctgctt 66  Q
    |||||||||||| || ||||||||||||||||||||||||||||||||| |||||| |||||    
T  51302179 actctatttttcctcacacacacttctacacacacagaagctttgtattttcacttatgctt 51302118  T

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Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 42911332 - 42911408
Alignment:
Q  1 caacactctatttttcttctcacacacttctacacacacagaagctttgt-attctcacttctgcttcaatactttc 76  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||  || ||||||||||||| || |||||    
T  42911332 caacactctattttttctctcacacacttctacacacacagaagctttgtgtttttcacttctgcttcgatgctttc 42911408  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 29107223 - 29107291
Alignment:
Q  8 ctatttttcttctcacacacttctacacacacagaagctttgtattctcacttctgcttcaatactttc 76  Q
    ||||||||  ||||||||||||||||| ||| ||||||||||||||  |||||||||||| || |||||    
T  29107223 ctattttttctctcacacacttctacatacagagaagctttgtatttccacttctgcttcgatgctttc 29107291  T

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