View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1596_low_4 (Length: 710)
Name: NF1596_low_4
Description: NF1596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1596_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 658; Significance: 0; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 658; E-Value: 0
Query Start/End: Original strand, 1 - 692
Target Start/End: Original strand, 40567576 - 40568264
Alignment:
| Q |
1 |
attaatgaatgcatggaatccaacaattgtgttgacggggcaacatgcatcaactttcctggaagctatcactgtttatgcccggaaggatatgaaggag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40567576 |
attaatgaatgcatggaatccaacaattgtgttgatggggcaacatgcatcaactttcctggaagctatcactgtttatgcccggaaggatatgaaggag |
40567675 |
T |
|
| Q |
101 |
acgggaaaagtaatggaacaagatgcagttcaaaatccagtaccaaacaaaggaaagagattatattgatcatttcattgagtgagtacaacaacacatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
40567676 |
acgggaaaagtaatggaacaagatgcagttcaaaatccagtaccaaacaaaggaaagagattatattgatcatttcattgagtgagtacaacaacacact |
40567775 |
T |
|
| Q |
201 |
ctattctggattcattcataacaaagatcatgcaaacaaattttattttcacaattaaattgttgaaacttgaaacatttcattgataaccacaatgtta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
40567776 |
ctattctggattcattcataacaaagatcatgcaaacaaattttattttcacaattaaattgttgaaacttgaaacatttcattgacaaccacaatgtta |
40567875 |
T |
|
| Q |
301 |
ttccatgtcataaattgttgttcagaactgaaagtcatacacaatgtattcataacagtggcattttgagatgttgacaacatgaaactgacttgaaaca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40567876 |
ttccatgtcataaattgttgttcagaactgaaagtcatacac---gtattcataacagtggcattttgagatgttgacaacatgaaactgacttgaaaca |
40567972 |
T |
|
| Q |
401 |
tcaacaagctacgaaaagcagaaaggaaatgaataagtttccatttgtttatgtccaggtgtcagcgtaagcctcatattactactggtgggtagctttt |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40567973 |
tcaacaagctacgaaaagcagaaaggaaatgaataagtttccatttgtttatgtccaggtgtcagcgtaagcctcatattactactggtgggtagctttt |
40568072 |
T |
|
| Q |
501 |
atgtgtattgggcattgaagaaaagaaagctcattcgacttaaagaacaattttttcaacaaaacggtggcttactgttacaacaacagatagttaggca |
600 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40568073 |
atgcgtattgggcattgaagaaaagaaagctcattcgacttaaagaacaattttttcaacaaaacggtggcttactgttacaacaacagatagttaggca |
40568172 |
T |
|
| Q |
601 |
tggagggtcaactgaaacagctaaagtgttcaccgttgaggagctaaatgaagcaaccaataactttgatgaaggtaagatcctaggccaag |
692 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40568173 |
tggagggtcaactgaaacagctaaagtgttcactgttgaggagctaaatgaagcaaccaataactttgatgaaggtaagatcctaggccaag |
40568264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 427 - 692
Target Start/End: Original strand, 40572600 - 40572865
Alignment:
| Q |
427 |
aaatgaataagtttccatttgtttatgtccaggtgtcagcgtaagcctcatattactactggtgggtagcttttatgtgtattgggcattgaagaaaaga |
526 |
Q |
| |
|
|||||| || |||||||||||||||| |||||||||| | ||||||| || ||| ||| | || |||||||||| |||| |||||| ||||||||| |
|
|
| T |
40572600 |
aaatgattatgtttccatttgtttattatcaggtgtcagtgcaagcctcgtagcactgctgattggaagcttttatgcatatttggcattcaagaaaaga |
40572699 |
T |
|
| Q |
527 |
aagctcattcgacttaaagaacaattttttcaacaaaacggtggcttactgttacaacaacagatagttaggcatggagggtcaactgaaacagctaaag |
626 |
Q |
| |
|
||| ||||| |||| ||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||| ||||| |||||||||| |||||||| |
|
|
| T |
40572700 |
aagttcattaaacttcaagaacatttttttcaacaaaatggtggcttactgttacaacaacagatagggaggcacggaggttcaactgaaatagctaaag |
40572799 |
T |
|
| Q |
627 |
tgttcaccgttgaggagctaaatgaagcaaccaataactttgatgaaggtaagatcctaggccaag |
692 |
Q |
| |
|
| |||| |||||||||||||| ||||||||||| ||||| ||| |||| |||||||||||||||| |
|
|
| T |
40572800 |
tcttcaaagttgaggagctaaaagaagcaaccaacaacttcgatcaaggcaagatcctaggccaag |
40572865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 437 - 692
Target Start/End: Original strand, 40579067 - 40579322
Alignment:
| Q |
437 |
gtttccatttgtttatgtccaggtgtcagcgtaagcctcatattactactggtgggtagcttttatgtgtattgggcattgaagaaaagaaagctcattc |
536 |
Q |
| |
|
|||||||||| ||||||| |||||||||| ||||||||| || ||| ||| | || |||||||||| |||| |||||| |||||||||||| ||||| |
|
|
| T |
40579067 |
gtttccatttctttatgttcaggtgtcagtgtaagcctcgtagcactgctgattggaagcttttatgcatatttggcattcaagaaaagaaagttcatta |
40579166 |
T |
|
| Q |
537 |
gacttaaagaacaattttttcaacaaaacggtggcttactgttacaacaacagatagttaggcatggagggtcaactgaaacagctaaagtgttcaccgt |
636 |
Q |
| |
|
|||||||||||| ||||| |||||||| |||||| |||||||||||||||||||| ||||||||||| |||||||||| ||||||||| |||| || |
|
|
| T |
40579167 |
aacttaaagaacattttttccaacaaaatggtggcatactgttacaacaacagatatggaggcatggaggttcaactgaaatagctaaagtcttcaaagt |
40579266 |
T |
|
| Q |
637 |
tgaggagctaaatgaagcaaccaataactttgatgaaggtaagatcctaggccaag |
692 |
Q |
| |
|
|||||||||||| || |||||||| ||||| |||||||| | |||||||||||||| |
|
|
| T |
40579267 |
tgaggagctaaaagatgcaaccaacaacttcgatgaaggcacgatcctaggccaag |
40579322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 437 - 692
Target Start/End: Original strand, 40597397 - 40597652
Alignment:
| Q |
437 |
gtttccatttgtttatgtccaggtgtcagcgtaagcctcatattactactggtgggtagcttttatgtgtattgggcattgaagaaaagaaagctcattc |
536 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||||||| || |||||||||||| |||||||||| |||||||| |||||||||| |||| ||||| |
|
|
| T |
40597397 |
gtttccatttgtttatgtccaggtgttagtgtaagcctcgtaggactactggtgggaagcttttatgcttattgggctttgaagaaaataaagatcatta |
40597496 |
T |
|
| Q |
537 |
gacttaaagaacaattttttcaacaaaacggtggcttactgttacaacaacagatagttaggcatggagggtcaactgaaacagctaaagtgttcaccgt |
636 |
Q |
| |
|
|||||||||| | |||||| | ||||||||||||||||||||| ||||||| ||||| | |||||||||||| || ||||| |||| | ||||| | |
|
|
| T |
40597497 |
aacttaaagaagagttttttaagcaaaacggtggcttactgttagaacaacaaatagtgaagcatggagggtcgtctaaaacacttaaaatcttcactat |
40597596 |
T |
|
| Q |
637 |
tgaggagctaaatgaagcaaccaataactttgatgaaggtaagatcctaggccaag |
692 |
Q |
| |
|
||||||| ||||||| ||||||| ||||| ||||||| || ||||||||||||| |
|
|
| T |
40597597 |
tgaggagttaaatgaggcaaccagcaacttcaatgaaggcaaaatcctaggccaag |
40597652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 437 - 688
Target Start/End: Original strand, 40590916 - 40591166
Alignment:
| Q |
437 |
gtttccatttgtttatgtccaggtgtcagcgtaagcctcatattactactggtgggtagcttttatgtgtattgggcattgaagaaaagaaagctcattc |
536 |
Q |
| |
|
|||||||||| |||||||| ||||||| ||||| ||||| || ||||||||| || ||| ||||| |||| ||||||||| |||||||||| | |
|
|
| T |
40590916 |
gtttccattt-tttatgtctaggtgtctgcgtaggcctcgtagcactactggttggaagcaattatgcttatttggcattgaaacaaagaaagcttgata |
40591014 |
T |
|
| Q |
537 |
gacttaaagaacaattttttcaacaaaacggtggcttactgttacaacaacagatagttaggcatggagggtcaactgaaacagctaaagtgttcaccgt |
636 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||| |||||| |||||| ||||||| | ||||||| |||||| | | ||||||||| | |
|
|
| T |
40591015 |
aacttaaagaacaattttttcaacaaaatggtggcttactgttgcaacaaaagataggaaggcatgaaaggtcaaccgaaacacccagagtgttcactat |
40591114 |
T |
|
| Q |
637 |
tgaggagctaaatgaagcaaccaataactttgatgaaggtaagatcctaggc |
688 |
Q |
| |
|
||||||||||||||||||||| || || ||||||||||| ||||| |||||| |
|
|
| T |
40591115 |
tgaggagctaaatgaagcaactaacaattttgatgaaggaaagattctaggc |
40591166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 437 - 692
Target Start/End: Original strand, 40601566 - 40601820
Alignment:
| Q |
437 |
gtttccatttgtttatgtccaggtgtcagcgtaagcctcatattactactggtgggtagcttttatgtgtattgggcattgaagaaaagaaagctcattc |
536 |
Q |
| |
|
|||||||||| ||||||| |||||||| ||||| ||||| || ||||||||| || ||| | |||| |||| |||||||||||||||| || || |
|
|
| T |
40601566 |
gtttccattt-tttatgtacaggtgtctgcgtaggcctcgtagcactactggtaggaagcatgtatgcatatttagcattgaagaaaagaagtcttgtta |
40601664 |
T |
|
| Q |
537 |
gacttaaagaacaattttttcaacaaaacggtggcttactgttacaacaacagatagttaggcatggagggtcaactgaaacagctaaagtgttcaccgt |
636 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| ||||||||||||||||| |||| | ||||||||| ||| | | |||| ||||||| ||||| | |
|
|
| T |
40601665 |
aacttaaagaacatttttttcaacaaaacggtggtttactgttacaacaacaaatagcaaagcatggaggatcagccggaacacctaaagtcttcactat |
40601764 |
T |
|
| Q |
637 |
tgaggagctaaatgaagcaaccaataactttgatgaaggtaagatcctaggccaag |
692 |
Q |
| |
|
||||||||||||| |||||||||| ||||| ||||| | | |||||||||||||| |
|
|
| T |
40601765 |
tgaggagctaaataaagcaaccaacaacttcaatgaaagcaggatcctaggccaag |
40601820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 26 - 193
Target Start/End: Original strand, 40572188 - 40572355
Alignment:
| Q |
26 |
attgtgttgacggggcaacatgcatcaactttcctggaagctatcactgtttatgcccggaaggatatgaaggagacgggaaaagtaatggaacaagatg |
125 |
Q |
| |
|
|||||||||| | ||||||||||||| | ||||||| ||||| || ||||||||||| ||||||||||| ||||||||||||| |||||||||| |||| |
|
|
| T |
40572188 |
attgtgttgaggaggcaacatgcatcgatcttcctgggagctaccattgtttatgcccagaaggatatgagggagacgggaaaaataatggaacaggatg |
40572287 |
T |
|
| Q |
126 |
cagttcaaaatccagtaccaaacaaaggaaagagattatattgatcatttcattgagtgagtacaaca |
193 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||| || || || | || |||||||||||||||||| |
|
|
| T |
40572288 |
cagtccaaaatccagtaccaaatcaaggaaagatatcatgttaactatcgcattgagtgagtacaaca |
40572355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 2 - 147
Target Start/End: Original strand, 40601158 - 40601303
Alignment:
| Q |
2 |
ttaatgaatgcatggaatccaacaattgtgttgacggggcaacatgcatcaactttcctggaagctatcactgtttatgcccggaaggatatgaaggaga |
101 |
Q |
| |
|
||||||| |||||||||||||| | |||||||| | ||| | ||||||||| ||| |||||||| || |||| |||||| ||||||||||| ||||| |
|
|
| T |
40601158 |
ttaatgattgcatggaatccaattactgtgttgaggaggcgagatgcatcaatcatcccggaagctaccattgttcatgcccagaaggatatgagggaga |
40601257 |
T |
|
| Q |
102 |
cgggaaaagtaatggaacaagatgcagttcaaaatccagtaccaaa |
147 |
Q |
| |
|
|||||||| |||||||||| |||||||| | || |||||||||||| |
|
|
| T |
40601258 |
cgggaaaaataatggaacaggatgcagtccgaactccagtaccaaa |
40601303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 5 - 193
Target Start/End: Original strand, 40578620 - 40578796
Alignment:
| Q |
5 |
atgaatgcatggaatccaacaattgtgttgacggggcaacatgcatcaactttcctggaagctatcactgtttatgcccggaaggatatgaaggagacgg |
104 |
Q |
| |
|
||||||||| ||||||||| | ||| |||| ||||| ||||||||||| ||||||||||||| || ||||||||||| ||||||||||||||||| |
|
|
| T |
40578620 |
atgaatgcaaggaatccaattactgttttgagggggcgacatgcatcaatcttcctggaagctaccattgtttatgcccaaaaggatatgaaggagac-- |
40578717 |
T |
|
| Q |
105 |
gaaaagtaatggaacaagatgcagttcaaaatccagtaccaaacaaaggaaagagattatattgatcatttcattgagtgagtacaaca |
193 |
Q |
| |
|
|||| |||||||||| ||||||||||||||||| ||| |||||||| || || |||||| || ||||||||||||||| |
|
|
| T |
40578718 |
----------ggaaaaagatgcagtccaaaatccagtaccaaatcaagtaaagagatcatgttaatcattgcactgagtgagtacaaca |
40578796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 5 - 110
Target Start/End: Original strand, 40596757 - 40596862
Alignment:
| Q |
5 |
atgaatgcatggaatccaacaattgtgttgacggggcaacatgcatcaactttcctggaagctatcactgtttatgcccggaaggatatgaaggagacgg |
104 |
Q |
| |
|
||||||||| ||||||||| | ||| || | ||||| ||||||| ||| |||||||||| || || ||||||||||| ||||||||||||||||||| |
|
|
| T |
40596757 |
atgaatgcaaggaatccaatgactgttttaagggggcgacatgcaccaatcttcctggaagttaccattgtttatgcccaaaaggatatgaaggagacgg |
40596856 |
T |
|
| Q |
105 |
gaaaag |
110 |
Q |
| |
|
||||| |
|
|
| T |
40596857 |
aaaaag |
40596862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 40590569 - 40590705
Alignment:
| Q |
1 |
attaatgaatgcatggaatccaacaattgtgttgacggggcaacatgcatcaactttcctggaagctatcactgtttatgcccggaaggatatgaaggag |
100 |
Q |
| |
|
||||||||||||| ||| || || | |||||| | | |||||||||| ||| ||||||||||||| || |||||||||||| ||||| |||| |||| |
|
|
| T |
40590569 |
attaatgaatgcacggagtctaatgactgtgttcaagaggcaacatgcgacaatcttcctggaagctaccattgtttatgcccgaaaggacatgagggag |
40590668 |
T |
|
| Q |
101 |
acgggaaaagtaatggaacaagatgcagttcaaaatc |
137 |
Q |
| |
|
|||| || | ||||| |||| ||||| | ||||||| |
|
|
| T |
40590669 |
acggaaagatgaatggcacaaaatgcaatccaaaatc |
40590705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 135; Significance: 6e-70; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 389 - 692
Target Start/End: Complemental strand, 2015771 - 2015472
Alignment:
| Q |
389 |
tgacttgaaacatcaacaagctacgaaaagcagaaaggaaatgaataagtttccatttgtttatgtccaggtgtcagcgtaagcctcatattactactgg |
488 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||||| |||| | | ||||||| ||||||| ||||||||||| | ||||| || |||||||| |
|
|
| T |
2015771 |
tgacttgaaacatcaacaagctaggaagagcagaaagaaaattatcatgtttcca----tttatgttcaggtgtcagcatgagccttgtagcactactgg |
2015676 |
T |
|
| Q |
489 |
tgggtagcttttatgtgtattgggcattgaagaaaagaaagctcattcgacttaaagaacaattttttcaacaaaacggtggcttactgttacaacaaca |
588 |
Q |
| |
|
| || |||||||||| ||||| |||||| |||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||| |||||||| | |
|
|
| T |
2015675 |
ttggaagcttttatgcgtatttggcattaaagaaaagaaagctcattaaactgaaagaacaattttttcaacaaaatggtggcttactactacaacaaga |
2015576 |
T |
|
| Q |
589 |
gatagttaggcatggagggtcaactgaaacagctaaagtgttcaccgttgaggagctaaatgaagcaaccaataactttgatgaaggtaagatcctaggc |
688 |
Q |
| |
|
|||| ||||| |||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||| ||||| || ||||| ||||| |||||| |
|
|
| T |
2015575 |
agtagtgaggcacggagggtcaactgaaacaactaaagtcttcactgttgaggagctaaatgaagcaaccaacaacttcgacgaaggcaagattctaggc |
2015476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 2016176 - 2015957
Alignment:
| Q |
1 |
attaatgaatgcatggaatccaacaattgtgttgacggggcaacatgcatcaactttcctggaagctatcactgtttatgcccggaaggatatgaaggag |
100 |
Q |
| |
|
||||||||||| ||||| ||||| | |||||||| | |||||||||| ||| ||||||||||||| || |||||||| |||| || |||||| ||| |
|
|
| T |
2016176 |
attaatgaatgtatggagtccaatgactgtgttgaggaagcaacatgcaccaatcttcctggaagctaccagtgtttatgtccggcagaatatgagggaa |
2016077 |
T |
|
| Q |
101 |
acgggaaaagtaatggaacaagatgcagttcaaaatccagtaccaaacaaaggaaagagattatattgatcatttcattgagtgagtacaacaacacatt |
200 |
Q |
| |
|
||||||| | |||||||||| ||||||| ||||||||| ||||||| ||| |||||||| ||| |||||||| || ||||||||||| |||||||| |
|
|
| T |
2016076 |
acgggaagatgaatggaacaaaatgcagtccaaaatccaataccaaatcaagaaaagagatcataatgatcattgcaatgagtgagtac---aacacatt |
2015980 |
T |
|
| Q |
201 |
ctattctggattcattcataaca |
223 |
Q |
| |
|
||||| | ||| ||||||||||| |
|
|
| T |
2015979 |
ctattattgatgcattcataaca |
2015957 |
T |
|
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