View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1596_low_40 (Length: 393)
Name: NF1596_low_40
Description: NF1596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1596_low_40 |
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Alignment Details
Target: chr5 (Bit Score: 145; Significance: 3e-76; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 5 - 161
Target Start/End: Complemental strand, 33049162 - 33049006
Alignment:
| Q |
5 |
tatacaatgatgcttttaaaagcattaaattttataaatttataaatatctcattagttggaaaagaatatatcactcttttatttgttgtgtaagtgtt |
104 |
Q |
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| T |
33049162 |
tatacaatgatgcttttaaaagcattaaattttataaatttataaatatctcattagttggaaaagaatatatcactcttttatttgttgtgtaagtgtt |
33049063 |
T |
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| Q |
105 |
gtttgaacttttgtaaaaatagaaaacgcattctattagctttaatttttctctatc |
161 |
Q |
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| T |
33049062 |
gtttgagcttttgtaaaactaaaaaacgcattctattagctttaatttttctctatc |
33049006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 183 - 303
Target Start/End: Complemental strand, 33048970 - 33048849
Alignment:
| Q |
183 |
atatcaaaactctttcataagtcagcatacttataatctcgttttagttgtggcctatagaagaaacaaattgat-nnnnnnnnttaaatatttcaaaat |
281 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
33048970 |
atatcgaaactctttcataagtcagcatacttataatctcgttttagttgtggcctatagaagaaacaaattgataaaaaaaaattaaatatttcaaaat |
33048871 |
T |
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| Q |
282 |
aataaccctatttgataaaaaa |
303 |
Q |
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|||||||||||||||||||||| |
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| T |
33048870 |
aataaccctatttgataaaaaa |
33048849 |
T |
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