View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1596_low_42 (Length: 380)
Name: NF1596_low_42
Description: NF1596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1596_low_42 |
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Alignment Details
Target: chr5 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 7 - 161
Target Start/End: Complemental strand, 7546602 - 7546448
Alignment:
| Q |
7 |
atgctctcatctataaataagcacttacaccaaaagggaagttcaagttcttacctattagcttgcatttgaaatttctcaaattttgttttggcacaat |
106 |
Q |
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| T |
7546602 |
atgctctcatctataaataagcacttacaccaagagagaagttcaagttcttacctattatattgcatttgaaatttctcaaattttgttttggcacaat |
7546503 |
T |
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| Q |
107 |
acttcctgatatctcttcattttgaaatttatcatcaaagtagtggaatctacat |
161 |
Q |
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| T |
7546502 |
acttcatgatatctcttcattttgaaatttatcatcaaagtagtggaatctacat |
7546448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 287 - 370
Target Start/End: Complemental strand, 7546418 - 7546335
Alignment:
| Q |
287 |
tatttacacttacattttcagtgcataccatttaaatctgctactgtatgtgtaaacccttgcatagagtatgaactatttcat |
370 |
Q |
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| T |
7546418 |
tatttacacttacattttcagtgcataccatttaaatctgctactatatgtgtaaacccttgcatagagtatgaactatttcat |
7546335 |
T |
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