View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1596_low_43 (Length: 366)
Name: NF1596_low_43
Description: NF1596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1596_low_43 |
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Alignment Details
Target: chr2 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 365
Target Start/End: Complemental strand, 45316770 - 45316406
Alignment:
| Q |
1 |
aaaagcattgagatgtggttgaaaataaacttaaatcaaaaaatggtctttacatgtgttgcagatgaatgcattgaaaaacttgggactgaatgttgtt |
100 |
Q |
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| T |
45316770 |
aaaagcattgagatgtggttgaaaataaacttaaatcaaaaaatggtctttacatgtgttgcagatgaatgcattgaaaaacttgggactgaatgttgtt |
45316671 |
T |
|
| Q |
101 |
aaggcaagcgtgtgtctggactcttctggcaagcacaacaagttttccatcacaaaggcgtaagcaatattcccgtgtattgtacatgttcgttttatgg |
200 |
Q |
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| T |
45316670 |
aaggcaagcgtgtgtctggactcttctggcaagcacaacaagttttccatcacaaaggcgtaagcaatattcccgtgtattgtacatgttcgttttatgg |
45316571 |
T |
|
| Q |
201 |
atcaaggttatgattagaatgtgtagtaatttatttggagatgcattgtggaactttgattgcagtgatacaggtagaaaagtggaagatccagagttgt |
300 |
Q |
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| T |
45316570 |
atcaaggttatgattagaatgtgtagtaatttatttggagatgcattgtggaactttgattgcagtgatacaggtagaaaagtggaagatccagagttgt |
45316471 |
T |
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| Q |
301 |
tagaggcaatccgtttgacgattttaaataacatgatcacgtatcacccggtacctttgcttctc |
365 |
Q |
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| T |
45316470 |
tagaggcaatccgtttgacgattttaaataacatgatcacgtatcacccggtacctatgcttctc |
45316406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 260 - 353
Target Start/End: Complemental strand, 969051 - 968958
Alignment:
| Q |
260 |
ttgcagtgatacaggtagaaaagtggaagatccagagttgttagaggcaatccgtttgacgattttaaataacatgatcacgtatcacccggta |
353 |
Q |
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| T |
969051 |
ttgcagtgatactggcagaaaagtggaagatccagagttgttagaggcaattcgtttgacaattataaataatctgattcagtatcacccggta |
968958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 57 - 164
Target Start/End: Complemental strand, 969899 - 969792
Alignment:
| Q |
57 |
tgttgcagatgaatgcattgaaaaacttgggactgaatgttgttaaggcaagcgtgtgtctggactcttctggcaagcacaacaagttttccatcacaaa |
156 |
Q |
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||||| |||||| ||||| ||| |||| || || ||||| || ||||||| || | ||| || ||||||||||||||||||||||||||||||||||| |
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| T |
969899 |
tgttgtagatgagagcattaaaagacttaggcctcaatgtcgtaaaggcaaatgtctttctcgattcttctggcaagcacaacaagttttccatcacaaa |
969800 |
T |
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| Q |
157 |
ggcgtaag |
164 |
Q |
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| T |
969799 |
agcgtaag |
969792 |
T |
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