View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1596_low_44 (Length: 365)
Name: NF1596_low_44
Description: NF1596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1596_low_44 |
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Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 18 - 254
Target Start/End: Original strand, 25968362 - 25968599
Alignment:
| Q |
18 |
gaaattctcagactcgttatcaccagtgccaattccccc-ggcctccaagcatacaacacgctgcctcaagtcacccaattccctttccatgagaaaaat |
116 |
Q |
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| T |
25968362 |
gaaattctcagactcgttatcaccagcgccaattccccccggtctcaaagcatacaacacgctgcctcaagtcacccaattccctttccatgagaaaaat |
25968461 |
T |
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| Q |
117 |
tctttccttaagtgttagattttgttcttcaagatgtttaattttcaaatcatgttgatcaaccctattctccaaattatgtttatcaccacaacttgtt |
216 |
Q |
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| T |
25968462 |
tctttccttaagtgttagattttgttcttcaagatgtttaattttcaaatcatgttcatcaaccctattctccaaattatgtttatcaccacaacttgtt |
25968561 |
T |
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| Q |
217 |
ggatatatcatctcaaacctacttaaatcattgttcaa |
254 |
Q |
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| T |
25968562 |
ggatatatcatctcaaacctacttaaatcattgttcaa |
25968599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 18 - 254
Target Start/End: Original strand, 25990431 - 25990664
Alignment:
| Q |
18 |
gaaattctcagactcgttatcaccagtgccaattcccccggcctccaagcatacaacacgctgcctcaagtcacccaattccctttccatgagaaaaatt |
117 |
Q |
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| T |
25990431 |
gaaattctcagactcacgatcaccagcgccatttccctcggtctccaagcatacaacacgctgcctcaaatcactcaattccctttccatgagaaaaatt |
25990530 |
T |
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| Q |
118 |
ctttccttaagtgttagattttgttcttcaagatgtttaattttcaaatcatgttgatcaaccctattctccaaattatgtttatcaccacaacttgttg |
217 |
Q |
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| T |
25990531 |
ctttccttaaaggatagattctgttcttcaagatgtgtgatttgcaaatcttgctcatcaactctattctctaaactatgttcatcacctgaac---ttg |
25990627 |
T |
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| Q |
218 |
gatatatcatctcaaacctacttaaatcattgttcaa |
254 |
Q |
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| T |
25990628 |
gatatatcatctcaaacctgctcaaatcattgttcaa |
25990664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 244 - 353
Target Start/End: Original strand, 25968613 - 25968722
Alignment:
| Q |
244 |
tcattgttcaagtcattgttttcaccggcttggtcggagttttctttttccttccggagacggattaggcctttcatggtgccatatgcatccagtcccc |
343 |
Q |
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| T |
25968613 |
tcatttttcaagtcattgttttcaccagcttggtcggagttttctttttccttccggagacggattaggcctttcatggtgccatatgcatccagtcccc |
25968712 |
T |
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| Q |
344 |
acttttcctt |
353 |
Q |
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|||||||||| |
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| T |
25968713 |
acttttcctt |
25968722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 300 - 356
Target Start/End: Original strand, 25990728 - 25990784
Alignment:
| Q |
300 |
gagacggattaggcctttcatggtgccatatgcatccagtccccacttttcctttgc |
356 |
Q |
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|||||||||||| |||||||| ||||||||| | || | |||||||||||||||||| |
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| T |
25990728 |
gagacggattagacctttcattgtgccatatccgtcaactccccacttttcctttgc |
25990784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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