View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1596_low_45 (Length: 361)

Name: NF1596_low_45
Description: NF1596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1596_low_45
NF1596_low_45
[»] chr2 (6 HSPs)
chr2 (152-361)||(35792050-35792249)
chr2 (74-179)||(35792248-35792354)
chr2 (16-67)||(30856941-30856992)
chr2 (31-65)||(32128278-32128312)
chr2 (16-64)||(15283138-15283186)
chr2 (16-64)||(21805675-21805723)
[»] chr4 (5 HSPs)
chr4 (25-74)||(23836979-23837028)
chr4 (16-64)||(54801131-54801179)
chr4 (29-69)||(23094522-23094562)
chr4 (32-68)||(33438195-33438231)
chr4 (16-64)||(46567063-46567111)
[»] chr7 (10 HSPs)
chr7 (16-64)||(25940556-25940604)
chr7 (16-65)||(18157073-18157122)
chr7 (16-64)||(9031341-9031389)
chr7 (12-64)||(43079518-43079570)
chr7 (16-62)||(43107746-43107792)
chr7 (31-64)||(6655506-6655539)
chr7 (16-64)||(2469826-2469874)
chr7 (16-64)||(27688771-27688819)
chr7 (32-64)||(35072134-35072166)
chr7 (12-64)||(38023315-38023367)
[»] chr6 (3 HSPs)
chr6 (12-71)||(8173194-8173253)
chr6 (16-64)||(21443822-21443870)
chr6 (38-74)||(9188824-9188860)
[»] chr3 (6 HSPs)
chr3 (16-70)||(34607802-34607856)
chr3 (16-64)||(7867598-7867646)
chr3 (12-63)||(462291-462342)
chr3 (19-64)||(50294013-50294058)
chr3 (20-64)||(31326846-31326890)
chr3 (16-64)||(32981010-32981058)
[»] chr8 (4 HSPs)
chr8 (16-65)||(32725670-32725719)
chr8 (16-64)||(42443240-42443288)
chr8 (16-64)||(36740446-36740494)
chr8 (12-64)||(44380503-44380555)
[»] scaffold0002 (1 HSPs)
scaffold0002 (12-64)||(440848-440900)
[»] chr1 (6 HSPs)
chr1 (16-63)||(51339590-51339637)
chr1 (16-64)||(25061867-25061915)
chr1 (12-64)||(27352760-27352812)
chr1 (16-64)||(30687186-30687234)
chr1 (20-64)||(49621499-49621543)
chr1 (12-64)||(51172196-51172248)
[»] chr5 (4 HSPs)
chr5 (16-66)||(9636045-9636095)
chr5 (32-66)||(26627480-26627514)
chr5 (12-64)||(91345-91397)
chr5 (16-64)||(24792586-24792634)
[»] scaffold0166 (1 HSPs)
scaffold0166 (16-64)||(34969-35017)


Alignment Details
Target: chr2 (Bit Score: 81; Significance: 5e-38; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 152 - 361
Target Start/End: Complemental strand, 35792249 - 35792050
Alignment:
Q  152 tttatctgcattggcggtttaaattttt-acatatgcatttcataaaataatatcaaatagatattcgtacatatattttaagaactaacactgacatnn 250  Q
    ||||| |||||||| ||| ||||||||| ||| |||||||  ||||||||||||||| ||||||||||||||||||||||||||||||||| | | |       
T  35792249 tttatatgcattggtggtgtaaattttttacaaatgcattcaataaaataatatcaagtagatattcgtacatatattttaagaactaaca-taaaa--- 35792154  T
Q  251 nnnnnnggatcaatatatgatttgattggatgtgcgtgtaaaaatgtttagacatactaattactatatatacaaattgatctcttaaataaaatacact 350  Q
          |||||||||||||||||||| |||||| |||||||||||||||| |||        ||| ||||||||||||||||||||||||||||||||||    
T  35792153 aaaaaaggatcaatatatgatttgatcggatgtacgtgtaaaaatgtttacaca-------gactctatatacaaattgatctcttaaataaaatacact 35792061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 74 - 179
Target Start/End: Complemental strand, 35792354 - 35792248
Alignment:
Q  74 acctcatcttgtaatgaagaccgggggagtattgttggaatattcacacaaaa-tcaacctgttaaataaagctattaatttatctgcattggcggttta 172  Q
    ||||| ||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||| ||    
T  35792354 acctcctcttgtaatgaagacagagggagtattgttggaatattcacacaaaaatcaacctgttaaataaagctattaatttatatgcattggtggtgta 35792255  T
Q  173 aattttt 179  Q
    |||||||    
T  35792254 aattttt 35792248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 30856941 - 30856992
Alignment:
Q  16 aaggttgttaaataaattgtaccaaatagttgtttaaatatcattgctcaaa 67  Q
    |||||||| |||||||||||||||||| |||||| | ||||||||| |||||    
T  30856941 aaggttgtcaaataaattgtaccaaatggttgttcatatatcattgttcaaa 30856992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 65
Target Start/End: Original strand, 32128278 - 32128312
Alignment:
Q  31 attgtaccaaatagttgtttaaatatcattgctca 65  Q
    ||||||||||||||||||| |||||||||||||||    
T  32128278 attgtaccaaatagttgttcaaatatcattgctca 32128312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 15283186 - 15283138
Alignment:
Q  16 aaggttgttaaataaattgtaccaaatagttgtttaaatatcattgctc 64  Q
    |||||||| ||||||||||||| |||| ||| || ||||||||||||||    
T  15283186 aaggttgtcaaataaattgtacgaaatggttattcaaatatcattgctc 15283138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 21805723 - 21805675
Alignment:
Q  16 aaggttgttaaataaattgtaccaaatagttgtttaaatatcattgctc 64  Q
    |||||||| ||| | |||||||||||| |||||| ||||||||||||||    
T  21805723 aaggttgtcaaaaagattgtaccaaatggttgttaaaatatcattgctc 21805675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 23837028 - 23836979
Alignment:
Q  25 aaataaattgtaccaaatagttgtttaaatatcattgctcaaaaaataaa 74  Q
    |||||| |||||||||||  ||||||||||||||||||||||||||||||    
T  23837028 aaataagttgtaccaaatgattgtttaaatatcattgctcaaaaaataaa 23836979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 54801131 - 54801179
Alignment:
Q  16 aaggttgttaaataaattgtaccaaatagttgtttaaatatcattgctc 64  Q
    |||||||| ||||||||||||||||||| ||||| ||||||||||||||    
T  54801131 aaggttgtcaaataaattgtaccaaataattgttcaaatatcattgctc 54801179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 23094522 - 23094562
Alignment:
Q  29 aaattgtaccaaatagttgtttaaatatcattgctcaaaaa 69  Q
    |||||||||||||| |||||| |||||||||||||||||||    
T  23094522 aaattgtaccaaatggttgttcaaatatcattgctcaaaaa 23094562  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 33438195 - 33438231
Alignment:
Q  32 ttgtaccaaatagttgtttaaatatcattgctcaaaa 68  Q
    ||||||||||| |||||||||||||||||||||||||    
T  33438195 ttgtaccaaatggttgtttaaatatcattgctcaaaa 33438231  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 46567063 - 46567111
Alignment:
Q  16 aaggttgttaaataaattgtaccaaatagttgtttaaatatcattgctc 64  Q
    |||||||| |||||  ||||||||||| |||||| ||||||||||||||    
T  46567063 aaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 46567111  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 25940604 - 25940556
Alignment:
Q  16 aaggttgttaaataaattgtaccaaatagttgtttaaatatcattgctc 64  Q
    |||||||| ||||| ||||||||||||||||||| ||||||||||||||    
T  25940604 aaggttgtcaaatagattgtaccaaatagttgttcaaatatcattgctc 25940556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 18157122 - 18157073
Alignment:
Q  16 aaggttgttaaataaattgtaccaaatagttgtttaaatatcattgctca 65  Q
    |||||||| |||||  |||||||||||||||||| |||||||||||||||    
T  18157122 aaggttgtcaaataggttgtaccaaatagttgttcaaatatcattgctca 18157073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 9031341 - 9031389
Alignment:
Q  16 aaggttgttaaataaattgtaccaaatagttgtttaaatatcattgctc 64  Q
    |||||||| ||||| |||||||||||| |||||| ||||||||||||||    
T  9031341 aaggttgtcaaatagattgtaccaaatggttgttcaaatatcattgctc 9031389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 43079570 - 43079518
Alignment:
Q  12 aagaaaggttgttaaataaattgtaccaaatagttgtttaaatatcattgctc 64  Q
    |||||||||||| |||||| || |||||||| |||||| ||||||||||||||    
T  43079570 aagaaaggttgtcaaataagttttaccaaatggttgttcaaatatcattgctc 43079518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 62
Target Start/End: Original strand, 43107746 - 43107792
Alignment:
Q  16 aaggttgttaaataaattgtaccaaatagttgtttaaatatcattgc 62  Q
    ||||||||||||||  ||||||||||| |||||| ||||||||||||    
T  43107746 aaggttgttaaataggttgtaccaaatggttgttcaaatatcattgc 43107792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 64
Target Start/End: Complemental strand, 6655539 - 6655506
Alignment:
Q  31 attgtaccaaatagttgtttaaatatcattgctc 64  Q
    |||||||||||| |||||||||||||||||||||    
T  6655539 attgtaccaaatggttgtttaaatatcattgctc 6655506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 2469826 - 2469874
Alignment:
Q  16 aaggttgttaaataaattgtaccaaatagttgtttaaatatcattgctc 64  Q
    |||||||| |||||  ||||||||||| |||||| ||||||||||||||    
T  2469826 aaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 2469874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 27688771 - 27688819
Alignment:
Q  16 aaggttgttaaataaattgtaccaaatagttgtttaaatatcattgctc 64  Q
    |||||||| ||||| ||||||||||||| ||||  ||||||||||||||    
T  27688771 aaggttgtcaaatagattgtaccaaataattgtacaaatatcattgctc 27688819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 64
Target Start/End: Complemental strand, 35072166 - 35072134
Alignment:
Q  32 ttgtaccaaatagttgtttaaatatcattgctc 64  Q
    |||||||||||||||||| ||||||||||||||    
T  35072166 ttgtaccaaatagttgttcaaatatcattgctc 35072134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 38023367 - 38023315
Alignment:
Q  12 aagaaaggttgttaaataaattgtaccaaatagttgtttaaatatcattgctc 64  Q
    ||||||| |||| |||||||||||| ||||||| |||| ||||||||| ||||    
T  38023367 aagaaagattgtcaaataaattgtatcaaatagctgttcaaatatcatagctc 38023315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 71
Target Start/End: Complemental strand, 8173253 - 8173194
Alignment:
Q  12 aagaaaggttgttaaataaattgtaccaaatagttgtttaaatatcattgctcaaaaaat 71  Q
    |||||||||||| |||||  || |||||||| |||||| |||||||||||||||||||||    
T  8173253 aagaaaggttgtcaaataggttataccaaatggttgttcaaatatcattgctcaaaaaat 8173194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 21443822 - 21443870
Alignment:
Q  16 aaggttgttaaataaattgtaccaaatagttgtttaaatatcattgctc 64  Q
    ||||||||  |||| ||||||||||||||||||| ||||||||||||||    
T  21443822 aaggttgtccaatagattgtaccaaatagttgttcaaatatcattgctc 21443870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 74
Target Start/End: Complemental strand, 9188860 - 9188824
Alignment:
Q  38 caaatagttgtttaaatatcattgctcaaaaaataaa 74  Q
    ||||| |||||||||||||||||||||||||| ||||    
T  9188860 caaatggttgtttaaatatcattgctcaaaaattaaa 9188824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 34607856 - 34607802
Alignment:
Q  16 aaggttgttaaataaattgtaccaaatagttgtttaaatatcattgctcaaaaaa 70  Q
    |||||||| ||||| ||||||||||||||||||| ||||||| |||||| |||||    
T  34607856 aaggttgtcaaatagattgtaccaaatagttgttcaaatatcgttgctctaaaaa 34607802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 7867646 - 7867598
Alignment:
Q  16 aaggttgttaaataaattgtaccaaatagttgtttaaatatcattgctc 64  Q
    |||||||| ||||| |||||||||||| |||||| ||||||||||||||    
T  7867646 aaggttgtcaaatagattgtaccaaatggttgttcaaatatcattgctc 7867598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 462342 - 462291
Alignment:
Q  12 aagaaaggttgttaaataaattgtaccaaatagttgtttaaatatcattgct 63  Q
    |||||||||||| |||||  ||||||||||| |||||| |||||||||||||    
T  462342 aagaaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgct 462291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 50294058 - 50294013
Alignment:
Q  19 gttgttaaataaattgtaccaaatagttgtttaaatatcattgctc 64  Q
    ||||| |||||| ||||||||||| |||||| ||||||||||||||    
T  50294058 gttgtcaaataagttgtaccaaatggttgttaaaatatcattgctc 50294013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 31326846 - 31326890
Alignment:
Q  20 ttgttaaataaattgtaccaaatagttgtttaaatatcattgctc 64  Q
    |||| ||||| |||||||||||| |||||| ||||||||||||||    
T  31326846 ttgtcaaatagattgtaccaaatggttgttcaaatatcattgctc 31326890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 32981058 - 32981010
Alignment:
Q  16 aaggttgttaaataaattgtaccaaatagttgtttaaatatcattgctc 64  Q
    |||||||| ||| || ||||||||||| |||||| ||||||||||||||    
T  32981058 aaggttgtcaaaaaatttgtaccaaatggttgttcaaatatcattgctc 32981010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 32725719 - 32725670
Alignment:
Q  16 aaggttgttaaataaattgtaccaaatagttgtttaaatatcattgctca 65  Q
    |||||||| ||||| ||| ||| |||||||||||||||||||||||||||    
T  32725719 aaggttgtcaaatagattatactaaatagttgtttaaatatcattgctca 32725670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 42443240 - 42443288
Alignment:
Q  16 aaggttgttaaataaattgtaccaaatagttgtttaaatatcattgctc 64  Q
    |||||||| ||| || |||||||||||||||||| ||||||||||||||    
T  42443240 aaggttgtcaaaaaatttgtaccaaatagttgttcaaatatcattgctc 42443288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 36740446 - 36740494
Alignment:
Q  16 aaggttgttaaataaattgtaccaaatagttgtttaaatatcattgctc 64  Q
    |||||||| ||||| |||||| ||||| |||||| ||||||||||||||    
T  36740446 aaggttgtcaaatagattgtatcaaatggttgttcaaatatcattgctc 36740494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 44380555 - 44380503
Alignment:
Q  12 aagaaaggttgttaaataaattgtaccaaatagttgtttaaatatcattgctc 64  Q
    |||||||||||| ||| |  |||||| |||||||||||||||||||| |||||    
T  44380555 aagaaaggttgtcaaaaaggttgtactaaatagttgtttaaatatcagtgctc 44380503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 440848 - 440900
Alignment:
Q  12 aagaaaggttgttaaataaattgtaccaaatagttgtttaaatatcattgctc 64  Q
    ||||||| |||| ||||| |||||||||||| |||||| ||||||||||||||    
T  440848 aagaaagattgtcaaatagattgtaccaaatggttgttcaaatatcattgctc 440900  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 51339637 - 51339590
Alignment:
Q  16 aaggttgttaaataaattgtaccaaatagttgtttaaatatcattgct 63  Q
    |||||||| |||||  |||||||||||||||||| |||||||||||||    
T  51339637 aaggttgtcaaataggttgtaccaaatagttgttcaaatatcattgct 51339590  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 25061867 - 25061915
Alignment:
Q  16 aaggttgttaaataaattgtaccaaatagttgtttaaatatcattgctc 64  Q
    |||||||| ||||| |||||| ||||| |||||| ||||||||||||||    
T  25061867 aaggttgtcaaatagattgtatcaaatggttgttcaaatatcattgctc 25061915  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 27352760 - 27352812
Alignment:
Q  12 aagaaaggttgttaaataaattgtaccaaatagttgtttaaatatcattgctc 64  Q
    ||||||||||||  ||||  ||||||||||| |||||| ||||||||||||||    
T  27352760 aagaaaggttgtcgaataggttgtaccaaatggttgttcaaatatcattgctc 27352812  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 30687186 - 30687234
Alignment:
Q  16 aaggttgttaaataaattgtaccaaatagttgtttaaatatcattgctc 64  Q
    |||||||| ||| || ||||||||||| |||||| ||||||||||||||    
T  30687186 aaggttgtcaaaaaatttgtaccaaatggttgttcaaatatcattgctc 30687234  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 49621499 - 49621543
Alignment:
Q  20 ttgttaaataaattgtaccaaatagttgtttaaatatcattgctc 64  Q
    |||| ||||| |||||||||||| |||||| ||||||||||||||    
T  49621499 ttgtcaaatagattgtaccaaatggttgttcaaatatcattgctc 49621543  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 51172248 - 51172196
Alignment:
Q  12 aagaaaggttgttaaataaattgtaccaaatagttgtttaaatatcattgctc 64  Q
    ||||||| |||| ||||| ||||||||||||  ||||| ||||||||||||||    
T  51172248 aagaaagattgtcaaatagattgtaccaaatgattgttcaaatatcattgctc 51172196  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 9636095 - 9636045
Alignment:
Q  16 aaggttgttaaataaattgtaccaaatagttgtttaaatatcattgctcaa 66  Q
    |||||||| |||||  ||||||||||| |||||| ||||||||||||||||    
T  9636095 aaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctcaa 9636045  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 66
Target Start/End: Original strand, 26627480 - 26627514
Alignment:
Q  32 ttgtaccaaatagttgtttaaatatcattgctcaa 66  Q
    |||||||||||||||||| ||||||||||||||||    
T  26627480 ttgtaccaaatagttgttcaaatatcattgctcaa 26627514  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 91345 - 91397
Alignment:
Q  12 aagaaaggttgttaaataaattgtaccaaatagttgtttaaatatcattgctc 64  Q
    |||||||||||| |||||  ||||| ||||| |||||| ||||||||||||||    
T  91345 aagaaaggttgtcaaataggttgtatcaaatggttgttcaaatatcattgctc 91397  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 24792586 - 24792634
Alignment:
Q  16 aaggttgttaaataaattgtaccaaatagttgtttaaatatcattgctc 64  Q
    |||||||| |||||  ||||||||||| |||||| ||||||||||||||    
T  24792586 aaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 24792634  T

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Target: scaffold0166 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 34969 - 35017
Alignment:
Q  16 aaggttgttaaataaattgtaccaaatagttgtttaaatatcattgctc 64  Q
    |||||||| |||||  ||||||||||| |||||| ||||||||||||||    
T  34969 aaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 35017  T

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