View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1596_low_47 (Length: 347)

Name: NF1596_low_47
Description: NF1596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1596_low_47
NF1596_low_47
[»] chr2 (8 HSPs)
chr2 (53-335)||(20247525-20247807)
chr2 (55-105)||(16463425-16463475)
chr2 (55-105)||(28679260-28679310)
chr2 (55-105)||(35203637-35203687)
chr2 (55-105)||(35705805-35705855)
chr2 (59-105)||(41156891-41156937)
chr2 (60-105)||(43515029-43515074)
chr2 (55-111)||(30340127-30340183)
[»] chr3 (4 HSPs)
chr3 (50-105)||(38296550-38296605)
chr3 (55-105)||(29057781-29057831)
chr3 (55-107)||(29555727-29555779)
chr3 (55-107)||(50745682-50745734)
[»] chr8 (4 HSPs)
chr8 (53-105)||(44001187-44001239)
chr8 (55-105)||(37471776-37471826)
chr8 (55-107)||(13924142-13924194)
chr8 (53-105)||(40570639-40570691)
[»] chr1 (6 HSPs)
chr1 (50-105)||(11897302-11897357)
chr1 (53-101)||(48336347-48336395)
chr1 (55-110)||(40118598-40118653)
chr1 (48-105)||(835997-836054)
chr1 (60-105)||(29094636-29094681)
chr1 (55-107)||(12990371-12990423)
[»] scaffold0024 (1 HSPs)
scaffold0024 (55-105)||(48787-48837)
[»] scaffold0172 (1 HSPs)
scaffold0172 (53-105)||(9402-9454)
[»] chr7 (5 HSPs)
chr7 (55-107)||(41910071-41910123)
chr7 (55-104)||(41538613-41538662)
chr7 (55-107)||(1709417-1709469)
chr7 (55-103)||(38197794-38197842)
chr7 (55-107)||(45335996-45336048)
[»] chr4 (4 HSPs)
chr4 (55-106)||(22894001-22894052)
chr4 (55-106)||(22945669-22945720)
chr4 (55-106)||(38960547-38960598)
chr4 (55-105)||(24310409-24310459)
[»] scaffold0514 (1 HSPs)
scaffold0514 (55-105)||(1735-1785)
[»] chr6 (3 HSPs)
chr6 (55-105)||(6997438-6997488)
chr6 (55-105)||(9395225-9395275)
chr6 (55-105)||(32135325-32135375)
[»] scaffold0014 (1 HSPs)
scaffold0014 (55-107)||(145180-145232)
[»] chr5 (1 HSPs)
chr5 (55-107)||(12203278-12203330)


Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 53 - 335
Target Start/End: Complemental strand, 20247807 - 20247525
Alignment:
Q  53 atcaagattgtccaaaaatttgtaacaaaagaattgttcaaatatcattactcatcttcgtatggagaaaacttttggttatagccaatttcctgcggta 152  Q
    |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  20247807 atcaagattgtccaaaaagttttaacaaaagaattgttcaaatatcattactcatcttcgtatggagaaaacttttggttatagccaattttctgcggta 20247708  T
Q  153 aaagaaataacagtttggtcagtactaattcagtcgtcggaaaaatctgatcaaggataaataaagatatgggtcgaactcgtatagtattcatcaattt 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  20247707 aaagaaataacagtttggtcagtactaattcagtcgtcggaaaaatctggtcaaggattaataaagacatgggtcgaactcgtatagtattcatcaattt 20247608  T
Q  253 catacacacacatgtaacgtgagacacataacgttgtctatgtcttgttaagccacaattgctaaatgattttgggcattcat 335  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20247607 catacacacacatgtaacgtgagacacataacgttgtctatgtcttgttaagccacaattgctaaatgattttgggcattcat 20247525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 105
Target Start/End: Original strand, 16463425 - 16463475
Alignment:
Q  55 caagattgtccaaaaatttgtaacaaaagaattgttcaaatatcattactc 105  Q
    ||||||||||| |||| ||||| || |||| ||||||||||||||||||||    
T  16463425 caagattgtcccaaaagttgtaccataagagttgttcaaatatcattactc 16463475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 105
Target Start/End: Original strand, 28679260 - 28679310
Alignment:
Q  55 caagattgtccaaaaatttgtaacaaaagaattgttcaaatatcattactc 105  Q
    |||| |||||| |||| ||||| ||||||| ||||||||||||||||||||    
T  28679260 caaggttgtcccaaaagttgtaccaaaagagttgttcaaatatcattactc 28679310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 105
Target Start/End: Complemental strand, 35203687 - 35203637
Alignment:
Q  55 caagattgtccaaaaatttgtaacaaaagaattgttcaaatatcattactc 105  Q
    |||| |||||| |||| ||||| ||||| ||||||||||||||||||||||    
T  35203687 caaggttgtcccaaaaattgtagcaaaaaaattgttcaaatatcattactc 35203637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 105
Target Start/End: Complemental strand, 35705855 - 35705805
Alignment:
Q  55 caagattgtccaaaaatttgtaacaaaagaattgttcaaatatcattactc 105  Q
    ||||||||||| |||| ||||| ||||| | ||||||||||||||||||||    
T  35705855 caagattgtcccaaaagttgtagcaaaaaagttgttcaaatatcattactc 35705805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 105
Target Start/End: Complemental strand, 41156937 - 41156891
Alignment:
Q  59 attgtccaaaaatttgtaacaaaagaattgttcaaatatcattactc 105  Q
    ||||||| |||| ||||| ||||| ||||||||||||||||||||||    
T  41156937 attgtcccaaaagttgtagcaaaaaaattgttcaaatatcattactc 41156891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 105
Target Start/End: Original strand, 43515029 - 43515074
Alignment:
Q  60 ttgtccaaaaatttgtaacaaaagaattgttcaaatatcattactc 105  Q
    |||||| |||| ||||||||||||| ||||||||||||||| ||||    
T  43515029 ttgtcccaaaagttgtaacaaaagagttgttcaaatatcatcactc 43515074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 111
Target Start/End: Original strand, 30340127 - 30340183
Alignment:
Q  55 caagattgtccaaaaatttgtaacaaaagaattgttcaaatatcattactcatcttc 111  Q
    |||| |||||| |||| ||||| ||||||| |||||||||||||| ||||| |||||    
T  30340127 caaggttgtcccaaaagttgtaccaaaagagttgttcaaatatcactactcctcttc 30340183  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 50 - 105
Target Start/End: Complemental strand, 38296605 - 38296550
Alignment:
Q  50 aatatcaagattgtccaaaaatttgtaacaaaagaattgttcaaatatcattactc 105  Q
    ||||||||| ||||||||||| || |||||||||| ||||||||||||||||||||    
T  38296605 aatatcaaggttgtccaaaaaattataacaaaagagttgttcaaatatcattactc 38296550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 105
Target Start/End: Original strand, 29057781 - 29057831
Alignment:
Q  55 caagattgtccaaaaatttgtaacaaaagaattgttcaaatatcattactc 105  Q
    |||| |||||| |||| ||||| ||||| ||||||||||||||||||||||    
T  29057781 caaggttgtcccaaaagttgtagcaaaaaaattgttcaaatatcattactc 29057831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 29555779 - 29555727
Alignment:
Q  55 caagattgtccaaaaatttgtaacaaaagaattgttcaaatatcattactcat 107  Q
    |||| |||||| |||| ||||| ||||||| |||||||||||||| |||||||    
T  29555779 caaggttgtcccaaaagttgtaccaaaagagttgttcaaatatcactactcat 29555727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 50745682 - 50745734
Alignment:
Q  55 caagattgtccaaaaatttgtaacaaaagaattgttcaaatatcattactcat 107  Q
    |||| |||||| |||| || || ||||| ||||||||||||||||||||||||    
T  50745682 caaggttgtcccaaaaattatagcaaaaaaattgttcaaatatcattactcat 50745734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 53 - 105
Target Start/End: Original strand, 44001187 - 44001239
Alignment:
Q  53 atcaagattgtccaaaaatttgtaacaaaagaattgttcaaatatcattactc 105  Q
    |||||| |||||||||||  |||||||||||| ||||||||||||||||||||    
T  44001187 atcaaggttgtccaaaaaaatgtaacaaaagagttgttcaaatatcattactc 44001239  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 105
Target Start/End: Original strand, 37471776 - 37471826
Alignment:
Q  55 caagattgtccaaaaatttgtaacaaaagaattgttcaaatatcattactc 105  Q
    ||||||||||| |||| ||||| ||||| | ||||||||||||||||||||    
T  37471776 caagattgtcccaaaagttgtagcaaaaaagttgttcaaatatcattactc 37471826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 13924142 - 13924194
Alignment:
Q  55 caagattgtccaaaaatttgtaacaaaagaattgttcaaatatcattactcat 107  Q
    ||||||||||  |||| ||||| ||||||| |||||||||||| |||||||||    
T  13924142 caagattgtcacaaaagttgtaccaaaagagttgttcaaatattattactcat 13924194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 105
Target Start/End: Original strand, 40570639 - 40570691
Alignment:
Q  53 atcaagattgtccaaaaatttgtaacaaaagaattgttcaaatatcattactc 105  Q
    |||||||| |||| |||| || |||||||| | ||||||||||||||||||||    
T  40570639 atcaagatcgtcccaaaaattataacaaaaaagttgttcaaatatcattactc 40570691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 50 - 105
Target Start/End: Original strand, 11897302 - 11897357
Alignment:
Q  50 aatatcaagattgtccaaaaatttgtaacaaaagaattgttcaaatatcattactc 105  Q
    ||||||||| |||||  |||| ||||||||||||| ||||||||||||||||||||    
T  11897302 aatatcaaggttgtcacaaaaattgtaacaaaagagttgttcaaatatcattactc 11897357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 48336395 - 48336347
Alignment:
Q  53 atcaagattgtccaaaaatttgtaacaaaagaattgttcaaatatcatt 101  Q
    |||||| ||||||||||| ||||||||||| | ||||||||||||||||    
T  48336395 atcaaggttgtccaaaaagttgtaacaaaatagttgttcaaatatcatt 48336347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 55 - 110
Target Start/End: Complemental strand, 40118653 - 40118598
Alignment:
Q  55 caagattgtccaaaaatttgtaacaaaagaattgttcaaatatcattactcatctt 110  Q
    |||| |||||| |||| ||||| ||||| |||||||||||||||||||||| ||||    
T  40118653 caaggttgtcccaaaaattgtagcaaaaaaattgttcaaatatcattactcttctt 40118598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 105
Target Start/End: Original strand, 835997 - 836054
Alignment:
Q  48 aaaatatcaagattgtccaaaaatttgtaacaaaagaattgttcaaatatcattactc 105  Q
    |||||| ||||||||||| |||| ||||| ||||||| ||||||||||| || |||||    
T  835997 aaaataacaagattgtcccaaaagttgtaccaaaagagttgttcaaataacactactc 836054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 105
Target Start/End: Complemental strand, 29094681 - 29094636
Alignment:
Q  60 ttgtccaaaaatttgtaacaaaagaattgttcaaatatcattactc 105  Q
    |||||| |||| ||||| ||||||| ||||||||||||||||||||    
T  29094681 ttgtcccaaaagttgtatcaaaagagttgttcaaatatcattactc 29094636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 12990423 - 12990371
Alignment:
Q  55 caagattgtccaaaaatttgtaacaaaagaattgttcaaatatcattactcat 107  Q
    |||| |||||| |||| ||||| ||||||| |||||||||||||| |||||||    
T  12990423 caaggttgtcccaaaagttgtatcaaaagagttgttcaaatatcactactcat 12990371  T

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Target: scaffold0024 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 105
Target Start/End: Original strand, 48787 - 48837
Alignment:
Q  55 caagattgtccaaaaatttgtaacaaaagaattgttcaaatatcattactc 105  Q
    |||| |||||| |||| ||||| ||||||||||||||||||||||||||||    
T  48787 caaggttgtcccaaaaattgtatcaaaagaattgttcaaatatcattactc 48837  T

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Target: scaffold0172 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 105
Target Start/End: Original strand, 9402 - 9454
Alignment:
Q  53 atcaagattgtccaaaaatttgtaacaaaagaattgttcaaatatcattactc 105  Q
    ||||| ||||||| |||| || |||||||||| ||||||||||||||||||||    
T  9402 atcaaaattgtcctaaaaattataacaaaagagttgttcaaatatcattactc 9454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 41910123 - 41910071
Alignment:
Q  55 caagattgtccaaaaatttgtaacaaaagaattgttcaaatatcattactcat 107  Q
    |||| |||||| |||| ||||| |||||||||||||||||||||| |||||||    
T  41910123 caaggttgtcctaaaagttgtaccaaaagaattgttcaaatatcactactcat 41910071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 104
Target Start/End: Original strand, 41538613 - 41538662
Alignment:
Q  55 caagattgtccaaaaatttgtaacaaaagaattgttcaaatatcattact 104  Q
    |||| |||||| |||| ||||| |||||||||||||||||||||| ||||    
T  41538613 caaggttgtcccaaaagttgtatcaaaagaattgttcaaatatcactact 41538662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 1709417 - 1709469
Alignment:
Q  55 caagattgtccaaaaatttgtaacaaaagaattgttcaaatatcattactcat 107  Q
    ||||||||||| |||| || || ||||||| |||||||||||||| |||||||    
T  1709417 caagattgtcccaaaaattataccaaaagagttgttcaaatatcactactcat 1709469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 38197794 - 38197842
Alignment:
Q  55 caagattgtccaaaaatttgtaacaaaagaattgttcaaatatcattac 103  Q
    ||||||||||| |||| ||||| ||||| | ||||||||||||||||||    
T  38197794 caagattgtcccaaaagttgtagcaaaaaagttgttcaaatatcattac 38197842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 45335996 - 45336048
Alignment:
Q  55 caagattgtccaaaaatttgtaacaaaagaattgttcaaatatcattactcat 107  Q
    |||| |||||| |||||||||| ||||||| | |||||||||||| |||||||    
T  45335996 caaggttgtcccaaaatttgtaccaaaagagtagttcaaatatcactactcat 45336048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 55 - 106
Target Start/End: Original strand, 22894001 - 22894052
Alignment:
Q  55 caagattgtccaaaaatttgtaacaaaagaattgttcaaatatcattactca 106  Q
    ||||||||||| |||| ||||| ||||| | |||||||||||||||||||||    
T  22894001 caagattgtcccaaaagttgtagcaaaaaagttgttcaaatatcattactca 22894052  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 55 - 106
Target Start/End: Original strand, 22945669 - 22945720
Alignment:
Q  55 caagattgtccaaaaatttgtaacaaaagaattgttcaaatatcattactca 106  Q
    ||||||||||| |||| ||||| ||||| | |||||||||||||||||||||    
T  22945669 caagattgtcccaaaagttgtagcaaaaaagttgttcaaatatcattactca 22945720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 55 - 106
Target Start/End: Complemental strand, 38960598 - 38960547
Alignment:
Q  55 caagattgtccaaaaatttgtaacaaaagaattgttcaaatatcattactca 106  Q
    ||||||||||| |||| ||||| ||||||| |||||||||||||| ||||||    
T  38960598 caagattgtcccaaaaattgtatcaaaagagttgttcaaatatcactactca 38960547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 105
Target Start/End: Complemental strand, 24310459 - 24310409
Alignment:
Q  55 caagattgtccaaaaatttgtaacaaaagaattgttcaaatatcattactc 105  Q
    |||| |||||| |||| ||||| ||||| ||||||||||||||||||||||    
T  24310459 caaggttgtcccaaaagttgtagcaaaaaaattgttcaaatatcattactc 24310409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0514 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0514
Description:

Target: scaffold0514; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 105
Target Start/End: Complemental strand, 1785 - 1735
Alignment:
Q  55 caagattgtccaaaaatttgtaacaaaagaattgttcaaatatcattactc 105  Q
    ||||||||||| |||| ||||| ||||||| |||||||||||||| |||||    
T  1785 caagattgtcccaaaagttgtaccaaaagagttgttcaaatatcactactc 1735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 105
Target Start/End: Complemental strand, 6997488 - 6997438
Alignment:
Q  55 caagattgtccaaaaatttgtaacaaaagaattgttcaaatatcattactc 105  Q
    |||| |||||| |||| ||||| ||||| ||||||||||||||||||||||    
T  6997488 caaggttgtcccaaaagttgtagcaaaaaaattgttcaaatatcattactc 6997438  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 105
Target Start/End: Complemental strand, 9395275 - 9395225
Alignment:
Q  55 caagattgtccaaaaatttgtaacaaaagaattgttcaaatatcattactc 105  Q
    ||||||||||| |||| ||||| ||||| | ||||||||||||||||||||    
T  9395275 caagattgtcccaaaagttgtagcaaaaaagttgttcaaatatcattactc 9395225  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 105
Target Start/End: Complemental strand, 32135375 - 32135325
Alignment:
Q  55 caagattgtccaaaaatttgtaacaaaagaattgttcaaatatcattactc 105  Q
    ||||||||||| |||| ||||| ||||| | ||||||||||||||||||||    
T  32135375 caagattgtcctaaaagttgtagcaaaaaagttgttcaaatatcattactc 32135325  T

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Target: scaffold0014 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 145180 - 145232
Alignment:
Q  55 caagattgtccaaaaatttgtaacaaaagaattgttcaaatatcattactcat 107  Q
    |||| |||||| |||| ||||| ||||||| |||||||||||||| |||||||    
T  145180 caaggttgtcccaaaagttgtaccaaaagagttgttcaaatatcactactcat 145232  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 12203278 - 12203330
Alignment:
Q  55 caagattgtccaaaaatttgtaacaaaagaattgttcaaatatcattactcat 107  Q
    ||||||||||  |||| ||||| ||||||| |||||||||||| |||||||||    
T  12203278 caagattgtcacaaaagttgtaccaaaagagttgttcaaatattattactcat 12203330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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