View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1596_low_53 (Length: 330)
Name: NF1596_low_53
Description: NF1596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1596_low_53 |
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Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 15 - 315
Target Start/End: Complemental strand, 39032485 - 39032179
Alignment:
| Q |
15 |
acatgcaccatacccgaaactattgagttgggacgggtcttcaggttgagttggctcatgcgcacccctatttaaatataatcacacagagcaaaacagt |
114 |
Q |
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| T |
39032485 |
acatgcaccatacccgaaactattgagttgggacgggtcttcatgttgagttggctcatgcgcacccctatttgaatataatcacacaaagcaaaacagt |
39032386 |
T |
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| Q |
115 |
gtaataggaagatatataatgaaataagaactaattattccttc--nnnnnnnnnnnnnctaattatatattttagcttattttacacgnnnnnnntaac |
212 |
Q |
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| T |
39032385 |
gtaataggaagatatataatgaaataagaactaattattccttcaaaaaaaaaaaaaaactaattatatattttagcttattttacacgaaaaaaataac |
39032286 |
T |
|
| Q |
213 |
taggttagttttcttcgccaatagaacaatacttttc----tagtgaaagagagcaagactttttatgacggcaaagtgttcaatataaagtgaataaga |
308 |
Q |
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|||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39032285 |
taggttagttttcttcgcaaatagaacaatacttttctttttagtgaaagacagcaagactttttatgacggcaaagtgttcaatataaagtgaataaga |
39032186 |
T |
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| Q |
309 |
tgtttct |
315 |
Q |
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||||||| |
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| T |
39032185 |
tgtttct |
39032179 |
T |
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