View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1596_low_54 (Length: 328)
Name: NF1596_low_54
Description: NF1596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1596_low_54 |
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Alignment Details
Target: chr6 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 13 - 312
Target Start/End: Complemental strand, 11668693 - 11668394
Alignment:
| Q |
13 |
tgaaccaaaacagaccttttcaatactttctcaaacacttcaaattttcactctcttccattattataaatcttcaagaatcttccactatgaattagan |
112 |
Q |
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| T |
11668693 |
tgaaccaaaacagaccttttcaatactttctcaaacacttcaaattttcactctcttccattattataaatcttcaagaatcttccactatgaattatat |
11668594 |
T |
|
| Q |
113 |
nnnnnnctgttaaccctccgattcccaagggaggcgggccctggtaatccagagttcgtccggatgtaagtaaagtctgataaaaaattgttgcatccag |
212 |
Q |
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| T |
11668593 |
ttttttctgttaaccctccgattcccaagggaggcgggtcctggtaatccggagttcgtccggaggtaagtaaagtctgataaaaaattgttgcatccag |
11668494 |
T |
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| Q |
213 |
taatcgaactcaaattctcatgaacaatttgtccttttctgtagctcattaaccaatgaattacaatcttcaggattacatgtaagttaacctttggttt |
312 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11668493 |
taatcgaactcaatttctcatgaacaatttgtccttttctgtagctcattaaccaatgaattacaatcttcaggattacatgtaagttaacctttggttt |
11668394 |
T |
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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 170
Target Start/End: Complemental strand, 1020191 - 1020141
Alignment:
| Q |
120 |
tgttaaccctccgattcccaagggaggcgggccctggtaatccagagttcg |
170 |
Q |
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| T |
1020191 |
tgttaaccctctggttcccaagggaaaggggccctggtaatccagagttcg |
1020141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 211
Target Start/End: Complemental strand, 35383276 - 35383243
Alignment:
| Q |
178 |
gtaagtaaagtctgataaaaaattgttgcatcca |
211 |
Q |
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| T |
35383276 |
gtaagtaaagtctgataaaaaattgttccatcca |
35383243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 242
Target Start/End: Original strand, 30474430 - 30474490
Alignment:
| Q |
182 |
gtaaagtctgataaaaaattgttgcatccagtaatcgaactcaaattctcatgaacaattt |
242 |
Q |
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||||||||||| ||||||||||| || | |||| |||||||||||||||||||||||| |
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| T |
30474430 |
gtaaagtctgacaaaaaattgttccactaaaaaatcaaactcaaattctcatgaacaattt |
30474490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 264
Target Start/End: Original strand, 33381591 - 33381675
Alignment:
| Q |
180 |
aagtaaagtctgataaaaaattgttgcatccagtaatcgaactcaaattctcatgaacaatttgtccttttctgtagctcattaa |
264 |
Q |
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|||||||||||||||||| |||||| || ||| |||| ||||| |||||| |||| |||||||| ||| ||||| ||||||| |
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| T |
33381591 |
aagtaaagtctgataaaatattgtttcaatcagaaatcaaactcggattctcttgaaaaatttgtcttttgatgtagttcattaa |
33381675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 5259346 - 5259390
Alignment:
| Q |
179 |
taagtaaagtctgataaaaaattgttgcatccagtaatcgaactc |
223 |
Q |
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|||||||| ||||| ||||||||||| ||||||| |||||||||| |
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| T |
5259346 |
taagtaaaatctgacaaaaaattgtttcatccaggaatcgaactc |
5259390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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