View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1596_low_56 (Length: 327)
Name: NF1596_low_56
Description: NF1596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1596_low_56 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 176 - 327
Target Start/End: Complemental strand, 45386375 - 45386224
Alignment:
| Q |
176 |
cccatttgcagcctcagattgtgactgttgttaaaattcacatgcattgtgaagcttgtgcacaggagatnnnnnnnnggatactgaaaatgaagggtac |
275 |
Q |
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| T |
45386375 |
cccatttgcagcctcagattgtgactgttgttaaaattcacatgcattgtgaagcttgtgcacaggagataaaaaaaaggatactgaaaatgaagggtac |
45386276 |
T |
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| Q |
276 |
tgtacaatatttaagtgtttttatttacaaaattatatggaattgtattttc |
327 |
Q |
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| T |
45386275 |
tgtacaatatttaagtctttttatttacaaaattatatagaattgtattttc |
45386224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 45386549 - 45386453
Alignment:
| Q |
1 |
ttgagcttctttctccgatcccaattgctcctgaggaggaaaaaattgtcgaggaagataaggctgcacctgaagagaagaagaaaaaagaggtaaa |
97 |
Q |
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| T |
45386549 |
ttgagcttctttctccgatcccaattgctcctgaggaggaaaaaattgtcgaggaagataaggctgcacctgaagagaagaagaaaaaagaggtaaa |
45386453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 45390918 - 45390822
Alignment:
| Q |
1 |
ttgagcttctttctccgatcccaattgctcctgaggaggaaaaaattgtcgaggaagataaggctgcacctgaagagaagaagaaaaaagaggtaaa |
97 |
Q |
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| T |
45390918 |
ttgagcttctttctccgatcccaattgctcctgaggaggaaaaacctgctgaggaagagaaggctgcacctgaagaggagaagaaagatgaggtaaa |
45390822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 178 - 283
Target Start/End: Complemental strand, 45390734 - 45390626
Alignment:
| Q |
178 |
catttgcagcctcagattgtga---ctgttgttaaaattcacatgcattgtgaagcttgtgcacaggagatnnnnnnnnggatactgaaaatgaagggta |
274 |
Q |
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| T |
45390734 |
catttgcagcctcagattgtgattactgtccttaaagttcacatgcattgtgaagcttgtgcagaggaaatcaaaaaacggatacttaaaatgaatggta |
45390635 |
T |
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| Q |
275 |
ctgtacaat |
283 |
Q |
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| T |
45390634 |
ctgtccaat |
45390626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 734526 - 734430
Alignment:
| Q |
1 |
ttgagcttctttctccgatcccaattgctcctgaggaggaaaaaattgtcgaggaagataaggctgcacctgaagagaagaagaaaaaagaggtaaa |
97 |
Q |
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| T |
734526 |
ttgagcttctttctccgatcccaattgctcctgaggaggaaaaacctgctgaggaagagaaggctgcacctgaagaggagaagaaagatgaggtaaa |
734430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 178 - 283
Target Start/End: Complemental strand, 734341 - 734233
Alignment:
| Q |
178 |
catttgcagcctcagattgtga---ctgttgttaaaattcacatgcattgtgaagcttgtgcacaggagatnnnnnnnnggatactgaaaatgaagggta |
274 |
Q |
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| T |
734341 |
catttgcagcctcagattgtgattactgtccttaaagttcacatgcattgtgaagcttgtgcagaggaaatcaaaaaacggatacttaaaatgaatggta |
734242 |
T |
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| Q |
275 |
ctgtacaat |
283 |
Q |
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| T |
734241 |
ctgtccaat |
734233 |
T |
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