View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1596_low_57 (Length: 326)
Name: NF1596_low_57
Description: NF1596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1596_low_57 |
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Alignment Details
Target: chr8 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 9 - 310
Target Start/End: Complemental strand, 35109562 - 35109260
Alignment:
| Q |
9 |
ataattcttgcccataaacagtccaacattgaattgacgatggaaggctgcttcacattccttgttaaacatttaccctgcaaacatatttgaattttag |
108 |
Q |
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| T |
35109562 |
ataattcttgcccataaacagtccaacattgaattgacgatggaaggctgcttcacattccttgttaaacatttaccctgcaaacatatttgaattttag |
35109463 |
T |
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| Q |
109 |
taaaagcattaaagcaatatctttggtgagatttaggaattaccatatttttatacttgtttaaataaacttgt-nnnnnnnnntgatgctaaaataaat |
207 |
Q |
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| T |
35109462 |
taaaagcattacagcaatatctttggtgagatttaggaattaccatatttttatacttgtttaaataaacttgtaaaaaaaaaatgatgctaaaataaat |
35109363 |
T |
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| Q |
208 |
gaaatatgaacgattagtatttgaaatttacaatcagtggcctggcctccaaagtaaagagttataatgcagctcatgagctaggaattaggatactgta |
307 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35109362 |
gaaatatgaacgattagtatttcaaatttacaatcagtggcctggcctccaaagtaaagagttataatgcagctcatgagctaggaattaggatactgta |
35109263 |
T |
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| Q |
308 |
tat |
310 |
Q |
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||| |
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| T |
35109262 |
tat |
35109260 |
T |
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