View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1596_low_59 (Length: 318)
Name: NF1596_low_59
Description: NF1596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1596_low_59 |
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Alignment Details
Target: chr6 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 77 - 302
Target Start/End: Complemental strand, 14196614 - 14196392
Alignment:
| Q |
77 |
ttgaaattaatgcagtaaaagaaaaagaaatccatttgtttcctattaggatcctttcaatttcccctcaataataaatatattagatagaattccatga |
176 |
Q |
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| T |
14196614 |
ttgaaattaatgcagtaaaagaaaaagaaatccatttgtttcctattaggatcctttcaatttcccctcaataataaatatattagatagaattccatga |
14196515 |
T |
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| Q |
177 |
aataataatgtcaaaaagagaaatgctaaaaatacactctttgaatatactgaatctatagagccaaaatatgaccgcattaaagtgtgatcttagagtt |
276 |
Q |
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| T |
14196514 |
attaat---gtcaaaaagagaaatgctaaaaatacactctttgaatatactaaatctatagagccaaaatatgacagcattaaagtgtgatcttagagtt |
14196418 |
T |
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| Q |
277 |
ggtttgtggcaatgaaggagtgtcac |
302 |
Q |
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| T |
14196417 |
ggtttgtggcaatgaaggagggtcac |
14196392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 14197099 - 14197012
Alignment:
| Q |
1 |
gcttcataagtgttatggcttcataaagatgag--gacacgcttttcccacaaaattttcctcttcctcttctttgatttgaaattaa |
86 |
Q |
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| T |
14197099 |
gcttcataagtgttatggcttcataaagatgagatgacacgcttctcccacaaaattttcctcttcctcttctttgatttgaaattaa |
14197012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 48160345 - 48160199
Alignment:
| Q |
1 |
gcttcataagtgttatggcttcataaagatgag--gacacgcttttcccacaaaattttcctcttcctcttctttgatttgaaattaatgcagtaaaaga |
98 |
Q |
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| T |
48160345 |
gcttcacaagtgttatggcttcataaagatgagatgacacccttctcccacaaaattttcctcttcctcttttttgatttgaaattaatgcagtaaaaga |
48160246 |
T |
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| Q |
99 |
aaaagaaatccatttgtttcctattaggatcctttcaatttcccctc |
145 |
Q |
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| T |
48160245 |
aaaagaaatccatttgtttcctattaggatcctttcaatttcccctc |
48160199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 251 - 302
Target Start/End: Complemental strand, 48159953 - 48159902
Alignment:
| Q |
251 |
ccgcattaaagtgtgatcttagagttggtttgtggcaatgaaggagtgtcac |
302 |
Q |
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| T |
48159953 |
ccgcattaaagtgtgatcttagagttggtttgtggcaatgaaggagggtcac |
48159902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 161 - 227
Target Start/End: Complemental strand, 48154054 - 48153990
Alignment:
| Q |
161 |
agatagaattccatgaaataataatgtcaaaaagagaaatgctaaaaatacactc-tttgaatatact |
227 |
Q |
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| T |
48154054 |
agatagaattccatgaaataat---gtcaaaaagagaaatgctagaaatacactcttttgaatatact |
48153990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 48169662 - 48169630
Alignment:
| Q |
1 |
gcttcataagtgttatggcttcataaagatgag |
33 |
Q |
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| T |
48169662 |
gcttcataagtgttatggtttcataaagatgag |
48169630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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