View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1596_low_6 (Length: 647)

Name: NF1596_low_6
Description: NF1596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1596_low_6
NF1596_low_6
[»] chr3 (11 HSPs)
chr3 (49-288)||(33527266-33527499)
chr3 (368-512)||(33527572-33527716)
chr3 (602-647)||(13280278-13280322)
chr3 (602-647)||(7049439-7049482)
chr3 (602-647)||(41285228-41285271)
chr3 (602-647)||(49849527-49849570)
chr3 (602-647)||(52793573-52793616)
chr3 (602-647)||(16865942-16865987)
chr3 (602-647)||(41284445-41284490)
chr3 (602-647)||(41718482-41718527)
chr3 (602-647)||(49850116-49850161)
[»] scaffold0136 (1 HSPs)
scaffold0136 (602-647)||(13347-13391)
[»] chr7 (5 HSPs)
chr7 (602-647)||(2130581-2130625)
chr7 (602-645)||(20539378-20539420)
chr7 (602-647)||(11562721-11562764)
chr7 (602-647)||(11562216-11562260)
chr7 (602-643)||(12087558-12087598)
[»] chr4 (9 HSPs)
chr4 (602-647)||(56205749-56205793)
chr4 (603-647)||(8085452-8085495)
chr4 (602-647)||(19510075-19510118)
chr4 (602-647)||(19510777-19510820)
chr4 (602-647)||(19511224-19511267)
chr4 (602-647)||(40631383-40631426)
chr4 (602-647)||(44234129-44234172)
chr4 (602-647)||(44234364-44234407)
chr4 (602-647)||(38023391-38023435)
[»] chr2 (3 HSPs)
chr2 (602-647)||(30726202-30726246)
chr2 (602-647)||(37917057-37917101)
chr2 (602-647)||(36555610-36555655)
[»] chr5 (7 HSPs)
chr5 (602-644)||(6617734-6617775)
chr5 (602-647)||(37632054-37632099)
chr5 (602-647)||(23100377-23100420)
chr5 (602-647)||(42380502-42380545)
chr5 (602-647)||(18932106-18932151)
chr5 (602-647)||(21572387-21572432)
chr5 (602-647)||(21572533-21572577)
[»] chr1 (5 HSPs)
chr1 (602-647)||(14753237-14753280)
chr1 (602-647)||(14753356-14753399)
chr1 (602-647)||(28727831-28727875)
chr1 (602-647)||(48189198-48189243)
chr1 (602-647)||(28728296-28728339)
[»] chr8 (7 HSPs)
chr8 (602-647)||(26851167-26851211)
chr8 (602-644)||(32776129-32776171)
chr8 (602-647)||(32776188-32776231)
chr8 (602-647)||(34323761-34323804)
chr8 (602-647)||(42576702-42576745)
chr8 (602-647)||(39680386-39680430)
chr8 (602-642)||(4859406-4859445)
[»] chr6 (3 HSPs)
chr6 (602-647)||(4583834-4583878)
chr6 (602-647)||(5401628-5401672)
chr6 (602-647)||(13888305-13888349)


Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 49 - 288
Target Start/End: Original strand, 33527266 - 33527499
Alignment:
Q  49 aaatggatggtcagggaatgtcatgatactacttggttgacaatagtgcgataagggtactaacagtaacagtagcgattatacata-ggatgtaatcac 147  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||| ||||||||||||    
T  33527266 aaatggatggtcagg-aatgtcatgatactacttggttgacaatagtgcgataagggtactaacagta------gcgattatacataaggatgtaatcac 33527358  T
Q  148 tattggtttaaatc-ataactaaaacctgctagagtatcctagccggcactaaaaatttagatgtaagcagcacacgcaaatattttgaaaaaataaatt 246  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  33527359 tattggtttaaatctataactaaaacctgctagagtatcctagccggcactaaaaatttagatgtaagcagcacacgcaaatattttgaaaaaa-aaatt 33527457  T
Q  247 agaagtagagttggtttagcctacaatgtggctgatgctaca 288  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  33527458 agaagtagagttggtttagcctacaatgtggctgatgctaca 33527499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 368 - 512
Target Start/End: Original strand, 33527572 - 33527716
Alignment:
Q  368 cgttccgaatattttaatactcacttctctttggaaaatttcacaatgctaataaatgctcggaaaatttgagagaaatatttttgtgaaaagcatgggt 467  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33527572 cgttccgaatattttaatactcacttctctttgggaaatttcacaatgctaataaatgctcggaaaatttgagagaaatatttttgtgaaaagcatgggt 33527671  T
Q  468 agcgaaattggattttattgaaattgtgggggtgtgagaactaag 512  Q
    ||| |||||||||| ||||||||||||||||||||| ||||||||    
T  33527672 agcaaaattggattatattgaaattgtgggggtgtgggaactaag 33527716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 602 - 647
Target Start/End: Original strand, 13280278 - 13280322
Alignment:
Q  602 cttattatgacctctttttcagaaaaacagcttattcaaaacagct 647  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||||    
T  13280278 cttattacgacctctttttca-aaaaacagcttattcaaaacagct 13280322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 602 - 647
Target Start/End: Complemental strand, 7049482 - 7049439
Alignment:
Q  602 cttattatgacctctttttcagaaaaacagcttattcaaaacagct 647  Q
    ||||||| |||||||||||||  |||||||||||||||||||||||    
T  7049482 cttattacgacctctttttca--aaaacagcttattcaaaacagct 7049439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 602 - 647
Target Start/End: Original strand, 41285228 - 41285271
Alignment:
Q  602 cttattatgacctctttttcagaaaaacagcttattcaaaacagct 647  Q
    ||||||| |||||||||||||  |||||||||||||||||||||||    
T  41285228 cttattacgacctctttttca--aaaacagcttattcaaaacagct 41285271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 602 - 647
Target Start/End: Complemental strand, 49849570 - 49849527
Alignment:
Q  602 cttattatgacctctttttcagaaaaacagcttattcaaaacagct 647  Q
    ||||||| |||||||||||||  |||||||||||||||||||||||    
T  49849570 cttattacgacctctttttca--aaaacagcttattcaaaacagct 49849527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 602 - 647
Target Start/End: Complemental strand, 52793616 - 52793573
Alignment:
Q  602 cttattatgacctctttttcagaaaaacagcttattcaaaacagct 647  Q
    ||||||| |||||||||||||  |||||||||||||||||||||||    
T  52793616 cttattacgacctctttttca--aaaacagcttattcaaaacagct 52793573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 602 - 647
Target Start/End: Original strand, 16865942 - 16865987
Alignment:
Q  602 cttattatgacctctttttcagaaaaacagcttattcaaaacagct 647  Q
    ||||||| |||||| |||||| | ||||||||||||||||||||||    
T  16865942 cttattacgacctcattttcaaataaacagcttattcaaaacagct 16865987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 602 - 647
Target Start/End: Original strand, 41284445 - 41284490
Alignment:
Q  602 cttattatgacctctttttcagaaaaacagcttattcaaaacagct 647  Q
    ||||||| || |||||||||| |||| |||||||||||||||||||    
T  41284445 cttattacgatctctttttcaaaaaaccagcttattcaaaacagct 41284490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 602 - 647
Target Start/End: Original strand, 41718482 - 41718527
Alignment:
Q  602 cttattatgacctctttttcagaaaaacagcttattcaaaacagct 647  Q
    |||||||| |||||||||  | ||||||||||||||||||||||||    
T  41718482 cttattattacctcttttaaaaaaaaacagcttattcaaaacagct 41718527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 602 - 647
Target Start/End: Complemental strand, 49850161 - 49850116
Alignment:
Q  602 cttattatgacctctttttcagaaaaacagcttattcaaaacagct 647  Q
    ||||||| ||||||||||| | ||||| ||||||||||||||||||    
T  49850161 cttattacgacctcttttttaaaaaaaaagcttattcaaaacagct 49850116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 602 - 647
Target Start/End: Complemental strand, 13391 - 13347
Alignment:
Q  602 cttattatgacctctttttcagaaaaacagcttattcaaaacagct 647  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||    
T  13391 cttattatgacctcttttt-agaaaaacagcttattcaaaacagct 13347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 602 - 647
Target Start/End: Original strand, 2130581 - 2130625
Alignment:
Q  602 cttattatgacctctttttcagaaaaacagcttattcaaaacagct 647  Q
    |||||||||||||||||| |||||||||||||||||||||||||||    
T  2130581 cttattatgacctctttt-cagaaaaacagcttattcaaaacagct 2130625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 602 - 645
Target Start/End: Complemental strand, 20539420 - 20539378
Alignment:
Q  602 cttattatgacctctttttcagaaaaacagcttattcaaaacag 645  Q
    |||||||||||||||||| |||||||||||||||||||||||||    
T  20539420 cttattatgacctctttt-cagaaaaacagcttattcaaaacag 20539378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 602 - 647
Target Start/End: Original strand, 11562721 - 11562764
Alignment:
Q  602 cttattatgacctctttttcagaaaaacagcttattcaaaacagct 647  Q
    |||||||||||||||||||||  |||||||||||||||||||||||    
T  11562721 cttattatgacctctttttca--aaaacagcttattcaaaacagct 11562764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 602 - 647
Target Start/End: Original strand, 11562216 - 11562260
Alignment:
Q  602 cttattatgacctctttttcagaaaaacagcttattcaaaacagct 647  Q
    |||||||||||||||||| || ||||||||||||||||||||||||    
T  11562216 cttattatgacctctttt-caaaaaaacagcttattcaaaacagct 11562260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 602 - 643
Target Start/End: Complemental strand, 12087598 - 12087558
Alignment:
Q  602 cttattatgacctctttttcagaaaaacagcttattcaaaac 643  Q
    |||||||||||||||||| || ||||||||||||||||||||    
T  12087598 cttattatgacctctttt-caaaaaaacagcttattcaaaac 12087558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 602 - 647
Target Start/End: Original strand, 56205749 - 56205793
Alignment:
Q  602 cttattatgacctctttttcagaaaaacagcttattcaaaacagct 647  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||    
T  56205749 cttattatgacctcttttt-agaaaaacagcttattcaaaacagct 56205793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 603 - 647
Target Start/End: Original strand, 8085452 - 8085495
Alignment:
Q  603 ttattatgacctctttttcagaaaaacagcttattcaaaacagct 647  Q
    ||||||||||||||||| |||||||||||| ||||||||||||||    
T  8085452 ttattatgacctctttt-cagaaaaacagcatattcaaaacagct 8085495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 602 - 647
Target Start/End: Original strand, 19510075 - 19510118
Alignment:
Q  602 cttattatgacctctttttcagaaaaacagcttattcaaaacagct 647  Q
    ||||||| |||||||||||||  |||||||||||||||||||||||    
T  19510075 cttattacgacctctttttca--aaaacagcttattcaaaacagct 19510118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 602 - 647
Target Start/End: Original strand, 19510777 - 19510820
Alignment:
Q  602 cttattatgacctctttttcagaaaaacagcttattcaaaacagct 647  Q
    ||||||| |||||||||||||  |||||||||||||||||||||||    
T  19510777 cttattacgacctctttttca--aaaacagcttattcaaaacagct 19510820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 602 - 647
Target Start/End: Complemental strand, 19511267 - 19511224
Alignment:
Q  602 cttattatgacctctttttcagaaaaacagcttattcaaaacagct 647  Q
    ||||||| |||||||||||||  |||||||||||||||||||||||    
T  19511267 cttattacgacctctttttca--aaaacagcttattcaaaacagct 19511224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 602 - 647
Target Start/End: Complemental strand, 40631426 - 40631383
Alignment:
Q  602 cttattatgacctctttttcagaaaaacagcttattcaaaacagct 647  Q
    ||||||| |||||||||||||  |||||||||||||||||||||||    
T  40631426 cttattacgacctctttttca--aaaacagcttattcaaaacagct 40631383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 602 - 647
Target Start/End: Original strand, 44234129 - 44234172
Alignment:
Q  602 cttattatgacctctttttcagaaaaacagcttattcaaaacagct 647  Q
    ||||||| |||||||||||||  |||||||||||||||||||||||    
T  44234129 cttattacgacctctttttca--aaaacagcttattcaaaacagct 44234172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 602 - 647
Target Start/End: Complemental strand, 44234407 - 44234364
Alignment:
Q  602 cttattatgacctctttttcagaaaaacagcttattcaaaacagct 647  Q
    ||||||| |||||||||||||  |||||||||||||||||||||||    
T  44234407 cttattacgacctctttttca--aaaacagcttattcaaaacagct 44234364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 602 - 647
Target Start/End: Complemental strand, 38023435 - 38023391
Alignment:
Q  602 cttattatgacctctttttcagaaaaacagcttattcaaaacagct 647  Q
    ||||||||||||||||||  | ||||||||||||||||||||||||    
T  38023435 cttattatgacctcttttaaa-aaaaacagcttattcaaaacagct 38023391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 602 - 647
Target Start/End: Original strand, 30726202 - 30726246
Alignment:
Q  602 cttattatgacctctttttcagaaaaacagcttattcaaaacagct 647  Q
    |||||||||||||||||| |||||||||||||||||||||||||||    
T  30726202 cttattatgacctctttt-cagaaaaacagcttattcaaaacagct 30726246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 602 - 647
Target Start/End: Original strand, 37917057 - 37917101
Alignment:
Q  602 cttattatgacctctttttcagaaaaacagcttattcaaaacagct 647  Q
    |||||||||||||||||| |||||||||||||||||||||||||||    
T  37917057 cttattatgacctctttt-cagaaaaacagcttattcaaaacagct 37917101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 602 - 647
Target Start/End: Complemental strand, 36555655 - 36555610
Alignment:
Q  602 cttattatgacctctttttcagaaaaacagcttattcaaaacagct 647  Q
    |||||||| |||||||||  | ||||||||||||||||||||||||    
T  36555655 cttattattacctcttttaaaaaaaaacagcttattcaaaacagct 36555610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 602 - 644
Target Start/End: Complemental strand, 6617775 - 6617734
Alignment:
Q  602 cttattatgacctctttttcagaaaaacagcttattcaaaaca 644  Q
    ||||||||||||| |||||||||||||||||||||||||||||    
T  6617775 cttattatgacct-tttttcagaaaaacagcttattcaaaaca 6617734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 602 - 647
Target Start/End: Complemental strand, 37632099 - 37632054
Alignment:
Q  602 cttattatgacctctttttcagaaaaacagcttattcaaaacagct 647  Q
    ||||||||||||||||||  | ||||||||||||||||||||||||    
T  37632099 cttattatgacctcttttaaaaaaaaacagcttattcaaaacagct 37632054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 602 - 647
Target Start/End: Original strand, 23100377 - 23100420
Alignment:
Q  602 cttattatgacctctttttcagaaaaacagcttattcaaaacagct 647  Q
    ||||||||||||||||||  | ||||||||||||||||||||||||    
T  23100377 cttattatgacctctttt--aaaaaaacagcttattcaaaacagct 23100420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 602 - 647
Target Start/End: Complemental strand, 42380545 - 42380502
Alignment:
Q  602 cttattatgacctctttttcagaaaaacagcttattcaaaacagct 647  Q
    ||||||| |||||||||||||  |||||||||||||||||||||||    
T  42380545 cttattacgacctctttttca--aaaacagcttattcaaaacagct 42380502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 602 - 647
Target Start/End: Complemental strand, 18932151 - 18932106
Alignment:
Q  602 cttattatgacctctttttcagaaaaacagcttattcaaaacagct 647  Q
    ||||||||||||||||||   ||||||||||||||| |||||||||    
T  18932151 cttattatgacctcttttcaggaaaaacagcttattaaaaacagct 18932106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 602 - 647
Target Start/End: Original strand, 21572387 - 21572432
Alignment:
Q  602 cttattatgacctctttttcagaaaaacagcttattcaaaacagct 647  Q
    ||||||||||||| ||||||| |||||||  |||||||||||||||    
T  21572387 cttattatgacctttttttcaaaaaaacaatttattcaaaacagct 21572432  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 602 - 647
Target Start/End: Original strand, 21572533 - 21572577
Alignment:
Q  602 cttattatgacctctttttcagaaaaacagcttattcaaaacagct 647  Q
    |||||||||||||||||| || |||||||| |||||||||||||||    
T  21572533 cttattatgacctctttt-caaaaaaacagtttattcaaaacagct 21572577  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 602 - 647
Target Start/End: Original strand, 14753237 - 14753280
Alignment:
Q  602 cttattatgacctctttttcagaaaaacagcttattcaaaacagct 647  Q
    |||||||||||||||||||||  |||||||||||||||||||||||    
T  14753237 cttattatgacctctttttca--aaaacagcttattcaaaacagct 14753280  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 602 - 647
Target Start/End: Original strand, 14753356 - 14753399
Alignment:
Q  602 cttattatgacctctttttcagaaaaacagcttattcaaaacagct 647  Q
    |||||||||||||||||||||  |||||||||||||||||||||||    
T  14753356 cttattatgacctctttttca--aaaacagcttattcaaaacagct 14753399  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 602 - 647
Target Start/End: Original strand, 28727831 - 28727875
Alignment:
Q  602 cttattatgacctctttttcagaaaaacagcttattcaaaacagct 647  Q
    |||||||||||||||||| || ||||||||||||||||||||||||    
T  28727831 cttattatgacctctttt-caaaaaaacagcttattcaaaacagct 28727875  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 602 - 647
Target Start/End: Complemental strand, 48189243 - 48189198
Alignment:
Q  602 cttattatgacctctttttcagaaaaacagcttattcaaaacagct 647  Q
    ||||||||||||||||||  | ||||||||||||||||||||||||    
T  48189243 cttattatgacctcttttaaaaaaaaacagcttattcaaaacagct 48189198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 602 - 647
Target Start/End: Original strand, 28728296 - 28728339
Alignment:
Q  602 cttattatgacctctttttcagaaaaacagcttattcaaaacagct 647  Q
    ||||||| |||||||||||||  |||||||||||||||||||||||    
T  28728296 cttattacgacctctttttca--aaaacagcttattcaaaacagct 28728339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000009; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 602 - 647
Target Start/End: Complemental strand, 26851211 - 26851167
Alignment:
Q  602 cttattatgacctctttttcagaaaaacagcttattcaaaacagct 647  Q
    |||||||||||||||||| || ||||||||||||||||||||||||    
T  26851211 cttattatgacctctttt-caaaaaaacagcttattcaaaacagct 26851167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 602 - 644
Target Start/End: Complemental strand, 32776171 - 32776129
Alignment:
Q  602 cttattatgacctctttttcagaaaaacagcttattcaaaaca 644  Q
    ||||||| ||||||||||||| ||||||| |||||||||||||    
T  32776171 cttattacgacctctttttcaaaaaaacaacttattcaaaaca 32776129  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 602 - 647
Target Start/End: Complemental strand, 32776231 - 32776188
Alignment:
Q  602 cttattatgacctctttttcagaaaaacagcttattcaaaacagct 647  Q
    |||||||||||||| ||||||  |||||||||||||||||||||||    
T  32776231 cttattatgacctcattttca--aaaacagcttattcaaaacagct 32776188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 602 - 647
Target Start/End: Complemental strand, 34323804 - 34323761
Alignment:
Q  602 cttattatgacctctttttcagaaaaacagcttattcaaaacagct 647  Q
    ||||||| |||||||||||||  |||||||||||||||||||||||    
T  34323804 cttattacgacctctttttca--aaaacagcttattcaaaacagct 34323761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 602 - 647
Target Start/End: Original strand, 42576702 - 42576745
Alignment:
Q  602 cttattatgacctctttttcagaaaaacagcttattcaaaacagct 647  Q
    ||||||| |||||||||||||  |||||||||||||||||||||||    
T  42576702 cttattacgacctctttttca--aaaacagcttattcaaaacagct 42576745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 602 - 647
Target Start/End: Complemental strand, 39680430 - 39680386
Alignment:
Q  602 cttattatgacctctttttcagaaaaacagcttattcaaaacagct 647  Q
    |||||||||| ||||||| || ||||||||||||||||||||||||    
T  39680430 cttattatgatctctttt-caaaaaaacagcttattcaaaacagct 39680386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 602 - 642
Target Start/End: Complemental strand, 4859445 - 4859406
Alignment:
Q  602 cttattatgacctctttttcagaaaaacagcttattcaaaa 642  Q
    ||||||| ||||||||||||| |||||||||||||||||||    
T  4859445 cttattacgacctctttttca-aaaaacagcttattcaaaa 4859406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000009; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 602 - 647
Target Start/End: Complemental strand, 4583878 - 4583834
Alignment:
Q  602 cttattatgacctctttttcagaaaaacagcttattcaaaacagct 647  Q
    ||||||||| |||||||| |||||||||||||||||||||||||||    
T  4583878 cttattatggcctctttt-cagaaaaacagcttattcaaaacagct 4583834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 602 - 647
Target Start/End: Original strand, 5401628 - 5401672
Alignment:
Q  602 cttattatgacctctttttcagaaaaacagcttattcaaaacagct 647  Q
    |||||||||||||||||| || ||||||| ||||||||||||||||    
T  5401628 cttattatgacctctttt-caaaaaaacatcttattcaaaacagct 5401672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 602 - 647
Target Start/End: Complemental strand, 13888349 - 13888305
Alignment:
Q  602 cttattatgacctctttttcagaaaaacagcttattcaaaacagct 647  Q
    ||||||||||  ||||||||| ||||||||||||||||||||||||    
T  13888349 cttattatgatatctttttca-aaaaacagcttattcaaaacagct 13888305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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