View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1596_low_60 (Length: 315)
Name: NF1596_low_60
Description: NF1596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1596_low_60 |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 8 - 286
Target Start/End: Complemental strand, 43483281 - 43483007
Alignment:
| Q |
8 |
tggaaatcagataatacatatcaactatgtctctcatctattgttgatattcctctcaaaaaataatcaggatcataggttaaaaattagttattggatc |
107 |
Q |
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| T |
43483281 |
tggaaatcagataatacatatcaactgtgcttataatctatggatgatattcctctcaaaaaataatctggatcataggttaaaaattagttattggatc |
43483182 |
T |
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| Q |
108 |
aaaatctttggtctgacaaactcatttattttctttaaacttaattgtatgattggattgactctaaactcgtcagaatcacagccagccacatgatttt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43483181 |
aaaatctttggtctgacaaactcatttattttctttaaacttaactgtatgattggattgactctaaactcgtcagaatcacagccagccacatgatttt |
43483082 |
T |
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| Q |
208 |
agtaaaaactacatattagatcgaacttcaacaaattcacagcatcaccgtaattttatcgaatacattattcatcaaa |
286 |
Q |
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|| ||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
43483081 |
agcaaaaactacatttta----aaacttcaacaaattcacagcatccccgtaattttatcgaatacattattcatcaaa |
43483007 |
T |
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