View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1596_low_73 (Length: 289)
Name: NF1596_low_73
Description: NF1596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1596_low_73 |
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Alignment Details
Target: chr6 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 273
Target Start/End: Complemental strand, 889044 - 888786
Alignment:
| Q |
18 |
atggttgaatctatttagtaatgataaagactc---ggtaccggtaattgtgtagttaatgagtaatgacactgtctctttattgtattaggttatgtaa |
114 |
Q |
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| T |
889044 |
atggttgaatctatttagtaatgataaagacacatgggtaccggtaattgtgtagttaatgagtaatgacactgtctttttactgtattaggttatgtaa |
888945 |
T |
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| Q |
115 |
ttgaatatccctctgcattgcatgattagtgagagtaatatgcaaacagattaaatttctgttggtttttgaattttcagttttcagatgaagtgtttgt |
214 |
Q |
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| T |
888944 |
ttgaatatccctctgcattgcatgattagtgagagtaatatgcaaacagattaaatttctgttggtttttgaattttcagttttcagatgaagtgtttgt |
888845 |
T |
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| Q |
215 |
ttggtttcttatgttataacggtagtaacttgagtccaatatgaagaacatgttatttg |
273 |
Q |
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| T |
888844 |
ttggtttcttatgttataacggtagtaacttgagtccaatctgaagaacatgttatttg |
888786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 273
Target Start/End: Original strand, 913372 - 913630
Alignment:
| Q |
18 |
atggttgaatctatttagtaatgataaagactc---ggtaccggtaattgtgtagttaatgagtaatgacactgtctctttattgtattaggttatgtaa |
114 |
Q |
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| T |
913372 |
atggttgaatctatttagtaatgataaagacacatgggtaccggtaattgtgtagttaatgagtaatgacactgtctttttactgtattaggttatgtaa |
913471 |
T |
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| Q |
115 |
ttgaatatccctctgcattgcatgattagtgagagtaatatgcaaacagattaaatttctgttggtttttgaattttcagttttcagatgaagtgtttgt |
214 |
Q |
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| T |
913472 |
ttgaatatccctctgcattgcatgattagtgagagtaatatgcaaacagattaaatttctgttggtttttgaattttcagttttcagatgaagtgtttgt |
913571 |
T |
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| Q |
215 |
ttggtttcttatgttataacggtagtaacttgagtccaatatgaagaacatgttatttg |
273 |
Q |
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| T |
913572 |
ttggtttcttatgttataacggtagtaacttgagtccaatctgaagaacatgttatttg |
913630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 202 - 273
Target Start/End: Original strand, 1002403 - 1002474
Alignment:
| Q |
202 |
atgaagtgtttgtttggtttcttatgttataacggtagtaacttgagtccaatatgaagaacatgttatttg |
273 |
Q |
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| T |
1002403 |
atgaagtgcttgtttggtttcttatattataacggtagtaactcgcgtccaatctgatgatcatgttatttg |
1002474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 83
Target Start/End: Original strand, 1002155 - 1002189
Alignment:
| Q |
49 |
tcggtaccggtaattgtgtagttaatgagtaatga |
83 |
Q |
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| T |
1002155 |
tcggtaccggtaattgtgtagttaatgagtaatga |
1002189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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