View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1596_low_75 (Length: 287)
Name: NF1596_low_75
Description: NF1596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1596_low_75 |
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Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 14 - 272
Target Start/End: Original strand, 52529148 - 52529406
Alignment:
| Q |
14 |
attattctctaccaagtcctttatagtactttcagcacatcctaatagaaatccatttccgtaatatccttttggtaggttcattatggtacgaatgtta |
113 |
Q |
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| T |
52529148 |
attattctctaccaagtcctttatagtactttcagcacatcctaatagaaatccatttccgtaatatccttttggtaggttcattatggtacgaatgtta |
52529247 |
T |
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| Q |
114 |
attgagaaaagtagcttaacaattagagtggagggtaatgatagattcattgaacgaatccaagagcgccatgtgtgtgctgccactacttcaaaggtag |
213 |
Q |
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| T |
52529248 |
atagagaaaagtagcttaacaattagagtggagggtaatgatagattcattgaacgaatccaagagcgccatgtgtgtgctgccactacttcaaaggtag |
52529347 |
T |
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| Q |
214 |
tacacttaagtgaaggaacacattgtttctttaagtagaggacatgggagggattaaag |
272 |
Q |
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| T |
52529348 |
tacacttaagtgaagggacacattgtttctttaagtagaggacatgggagggattaaag |
52529406 |
T |
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