View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1596_low_77 (Length: 284)

Name: NF1596_low_77
Description: NF1596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1596_low_77
NF1596_low_77
[»] chr1 (20 HSPs)
chr1 (88-177)||(47655722-47655812)
chr1 (85-177)||(6706300-6706393)
chr1 (88-177)||(13509775-13509865)
chr1 (88-177)||(50031002-50031093)
chr1 (95-177)||(4485019-4485102)
chr1 (95-177)||(44740325-44740408)
chr1 (93-168)||(41512322-41512398)
chr1 (95-160)||(27416744-27416809)
chr1 (93-145)||(24075700-24075752)
chr1 (93-177)||(42137536-42137621)
chr1 (95-153)||(46033537-46033595)
chr1 (95-168)||(49430812-49430886)
chr1 (93-177)||(1762396-1762479)
chr1 (93-161)||(11829252-11829320)
chr1 (93-167)||(45179509-45179583)
chr1 (88-128)||(7385389-7385429)
chr1 (93-165)||(27067313-27067385)
chr1 (95-177)||(11050935-11051018)
chr1 (93-154)||(20473663-20473724)
chr1 (93-154)||(20557829-20557890)
[»] scaffold0808 (1 HSPs)
scaffold0808 (85-177)||(4258-4351)
[»] chr5 (12 HSPs)
chr5 (88-177)||(41742056-41742146)
chr5 (88-166)||(31905604-31905683)
chr5 (93-168)||(10900310-10900385)
chr5 (95-168)||(11018273-11018347)
chr5 (93-165)||(40979597-40979669)
chr5 (98-146)||(53534-53582)
chr5 (93-168)||(33387544-33387619)
chr5 (95-177)||(41039971-41040054)
chr5 (95-168)||(8958347-8958421)
chr5 (93-160)||(25256667-25256734)
chr5 (93-160)||(25320458-25320525)
chr5 (107-168)||(2526466-2526527)
[»] chr2 (10 HSPs)
chr2 (88-177)||(43342111-43342201)
chr2 (88-160)||(35458036-35458109)
chr2 (93-168)||(44002825-44002901)
chr2 (95-177)||(37640596-37640679)
chr2 (95-177)||(7473698-7473781)
chr2 (95-166)||(32497056-32497128)
chr2 (93-177)||(12015691-12015775)
chr2 (88-144)||(37996891-37996946)
chr2 (132-177)||(17481005-17481051)
chr2 (93-157)||(43695141-43695205)
[»] chr8 (11 HSPs)
chr8 (88-177)||(22936405-22936494)
chr8 (88-172)||(45276243-45276327)
chr8 (88-177)||(8416836-8416926)
chr8 (93-168)||(2025691-2025767)
chr8 (99-177)||(35164216-35164295)
chr8 (95-177)||(35802179-35802262)
chr8 (93-168)||(3590249-3590323)
chr8 (93-165)||(13015857-13015929)
chr8 (95-168)||(36821470-36821545)
chr8 (93-147)||(33165970-33166024)
chr8 (93-168)||(7637408-7637482)
[»] chr7 (16 HSPs)
chr7 (88-172)||(25472604-25472689)
chr7 (88-177)||(30139663-30139753)
chr7 (95-176)||(43664652-43664733)
chr7 (95-177)||(26826552-26826635)
chr7 (95-177)||(15000048-15000131)
chr7 (98-168)||(47158067-47158137)
chr7 (93-176)||(298496-298579)
chr7 (93-176)||(2000007-2000089)
chr7 (95-177)||(26827602-26827681)
chr7 (93-161)||(32450929-32450996)
chr7 (93-177)||(47085523-47085607)
chr7 (95-177)||(25970613-25970696)
chr7 (95-177)||(30825370-30825452)
chr7 (93-161)||(25191713-25191781)
chr7 (93-177)||(26169806-26169890)
chr7 (95-147)||(45202651-45202702)
[»] chr3 (17 HSPs)
chr3 (90-177)||(39251652-39251740)
chr3 (88-177)||(48254338-48254428)
chr3 (93-168)||(30810886-30810962)
chr3 (95-168)||(28182550-28182624)
chr3 (93-163)||(50392669-50392740)
chr3 (95-177)||(11263871-11263954)
chr3 (95-177)||(45150778-45150861)
chr3 (95-177)||(42274697-42274780)
chr3 (95-177)||(48181249-48181333)
chr3 (95-177)||(51229907-51229990)
chr3 (91-168)||(45488952-45489030)
chr3 (95-176)||(53687213-53687295)
chr3 (93-165)||(28883868-28883940)
chr3 (93-165)||(44328830-44328903)
chr3 (95-147)||(51407644-51407696)
chr3 (93-163)||(44610676-44610745)
chr3 (95-168)||(42074572-42074642)
[»] chr4 (18 HSPs)
chr4 (88-174)||(30418231-30418318)
chr4 (88-177)||(28963703-28963793)
chr4 (93-177)||(50523706-50523791)
chr4 (95-177)||(53663470-53663553)
chr4 (96-176)||(8510339-8510419)
chr4 (101-172)||(29385884-29385956)
chr4 (95-168)||(22606204-22606278)
chr4 (93-168)||(39732988-39733064)
chr4 (93-168)||(16202942-16203017)
chr4 (95-168)||(45105986-45106060)
chr4 (95-177)||(48407132-48407215)
chr4 (95-177)||(49723960-49724043)
chr4 (95-177)||(38767971-38768054)
chr4 (93-168)||(51677276-51677351)
chr4 (95-177)||(53403951-53404029)
chr4 (120-168)||(5937737-5937786)
chr4 (98-146)||(26457294-26457342)
chr4 (93-161)||(28911757-28911825)
[»] scaffold0068 (1 HSPs)
scaffold0068 (88-177)||(37869-37959)
[»] chr6 (6 HSPs)
chr6 (85-177)||(10683325-10683418)
chr6 (93-165)||(27825177-27825250)
chr6 (93-162)||(20838345-20838415)
chr6 (107-168)||(4146992-4147053)
chr6 (93-168)||(30134321-30134396)
chr6 (88-118)||(365771-365801)
[»] scaffold0069 (1 HSPs)
scaffold0069 (95-177)||(16991-17074)
[»] scaffold0097 (1 HSPs)
scaffold0097 (95-177)||(32897-32980)
[»] scaffold0006 (1 HSPs)
scaffold0006 (95-177)||(91716-91799)


Alignment Details
Target: chr1 (Bit Score: 79; Significance: 6e-37; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 88 - 177
Target Start/End: Complemental strand, 47655812 - 47655722
Alignment:
Q  88 ttgtaatttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattag-ccccgaaaaatatttatggtcatgacttatcaaa 177  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  47655812 ttgtaatttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagcccccgaaaaatatttatggtcatgacttaccaaa 47655722  T

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Target: chr1; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 85 - 177
Target Start/End: Original strand, 6706300 - 6706393
Alignment:
Q  85 gaattgtaatttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagcc-ccgaaaaatatttatggtcatgacttatcaaa 177  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||    
T  6706300 gaattataatttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagcctccgaaaaatgtttatggtcatgacttaccaaa 6706393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 88 - 177
Target Start/End: Complemental strand, 13509865 - 13509775
Alignment:
Q  88 ttgtaatttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattag-ccccgaaaaatatttatggtcatgacttatcaaa 177  Q
    ||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||| ||||||||||||||||| ||||    
T  13509865 ttgtaatttaacttgatgaaccaaatttaattacaaaactgaacgaaccaaattagcccccgaaaaatgtttatggtcatgacttaccaaa 13509775  T

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Target: chr1; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 88 - 177
Target Start/End: Original strand, 50031002 - 50031093
Alignment:
Q  88 ttgtaatttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagc--cccgaaaaatatttatggtcatgacttatcaaa 177  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||  |||||| ||||||||||||||||| ||||    
T  50031002 ttgtaatttaatttgatgaatcaaatttaattagaaaacttaacgaaccaaattagcgtccaaaaaaatgtttatggtcatgacttaccaaa 50031093  T

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Target: chr1; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 95 - 177
Target Start/End: Complemental strand, 4485102 - 4485019
Alignment:
Q  95 ttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattag-ccccgaaaaatatttatggtcatgacttatcaaa 177  Q
    |||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||| ||| ||||    
T  4485102 ttaatttgatgaaccaaatttaattagaaaacttaacgaaactaattagcccccgaaaaatatttatggtcatgatttaccaaa 4485019  T

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Target: chr1; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 95 - 177
Target Start/End: Original strand, 44740325 - 44740408
Alignment:
Q  95 ttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagcc-ccgaaaaatatttatggtcatgacttatcaaa 177  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||| ||| ||||    
T  44740325 ttaacttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccgaaaaatatttattgtcatgagttaccaaa 44740408  T

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Target: chr1; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 93 - 168
Target Start/End: Original strand, 41512322 - 41512398
Alignment:
Q  93 atttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagccccga-aaaatatttatggtcatga 168  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||||| |||||    
T  41512322 atttagtttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcccccataaaatatttatggccatga 41512398  T

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Target: chr1; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 95 - 160
Target Start/End: Original strand, 27416744 - 27416809
Alignment:
Q  95 ttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagccccgaaaaatatttat 160  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||| |||||    
T  27416744 ttaatttgatgaaccaaatttaatcagaaaatttaacgaaccaaattagcctcgaaaaatgtttat 27416809  T

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Target: chr1; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 93 - 145
Target Start/End: Original strand, 24075700 - 24075752
Alignment:
Q  93 atttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagcc 145  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  24075700 atttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcc 24075752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 93 - 177
Target Start/End: Complemental strand, 42137621 - 42137536
Alignment:
Q  93 atttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagccccga-aaaatatttatggtcatgacttatcaaa 177  Q
    ||||||| |||| ||||||||||||| ||||||||||||||||||| ||| |||| | ||||||||||||||||||| ||| ||||    
T  42137621 atttaatctgataaaccaaatttaatcagaaaacttaacgaaccaacttaacccccataaaatatttatggtcatgagttaccaaa 42137536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 95 - 153
Target Start/End: Complemental strand, 46033595 - 46033537
Alignment:
Q  95 ttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagccccgaaaaa 153  Q
    |||||||||||||||||||||||| |||||||| ||| ||||||||||||||| |||||    
T  46033595 ttaatttgatgaaccaaatttaatcagaaaactcaacaaaccaaattagcccccaaaaa 46033537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 95 - 168
Target Start/End: Original strand, 49430812 - 49430886
Alignment:
Q  95 ttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagc-cccgaaaaatatttatggtcatga 168  Q
    ||||||| |||||||||||||||| | ||||||||||||||||||  ||| | ||||||||||||||||||||||    
T  49430812 ttaatttaatgaaccaaatttaatcaaaaaacttaacgaaccaaaccagctctcgaaaaatatttatggtcatga 49430886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 93 - 177
Target Start/End: Original strand, 1762396 - 1762479
Alignment:
Q  93 atttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagccccgaaaaatatttatggtcatgacttatcaaa 177  Q
    ||||||||||||||||||||||  || | |||| ||||||||||||||||||| || |||||||||| |||||||| ||| ||||    
T  1762396 atttaatttgatgaaccaaattgtatcaaaaaatttaacgaaccaaattagcctcggaaaatattta-ggtcatgagttaccaaa 1762479  T

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Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 93 - 161
Target Start/End: Original strand, 11829252 - 11829320
Alignment:
Q  93 atttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagccccgaaaaatatttatg 161  Q
    ||||||||||| |||||||||||||| | |||| |||||||||||||||| ||||  ||||||||||||    
T  11829252 atttaatttgaggaaccaaatttaatcaaaaaatttaacgaaccaaattaaccccataaaatatttatg 11829320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 93 - 167
Target Start/End: Original strand, 45179509 - 45179583
Alignment:
Q  93 atttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagccccgaaaaatatttatggtcatg 167  Q
    ||||||||||||||| |||||||||| | |||| |  |||||||||||||||||   ||||||||||||||||||    
T  45179509 atttaatttgatgaatcaaatttaatcaaaaaaatctacgaaccaaattagccctacaaaatatttatggtcatg 45179583  T

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Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 88 - 128
Target Start/End: Original strand, 7385389 - 7385429
Alignment:
Q  88 ttgtaatttaatttgatgaaccaaatttaattagaaaactt 128  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  7385389 ttgtaatttaatttgatgaatcaaatttaattagaaaactt 7385429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 93 - 165
Target Start/End: Original strand, 27067313 - 27067385
Alignment:
Q  93 atttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagccccgaaaaatatttatggtca 165  Q
    |||||||||||||||||||||||||| | |||| |||||||| |||||||  ||  ||| |||||||||||||    
T  27067313 atttaatttgatgaaccaaatttaataaaaaaaattaacgaatcaaattaaacctaaaagatatttatggtca 27067385  T

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Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 95 - 177
Target Start/End: Complemental strand, 11051018 - 11050935
Alignment:
Q  95 ttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagccc-cgaaaaatatttatggtcatgacttatcaaa 177  Q
    |||||||||||||||||||||| | | |||| |||| | | ||||||||||| ||||||||||||||||| |||| ||| ||||    
T  11051018 ttaatttgatgaaccaaatttattcaaaaaaattaatggatcaaattagccctcgaaaaatatttatggtaatgagttaccaaa 11050935  T

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Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 154
Target Start/End: Complemental strand, 20473724 - 20473663
Alignment:
Q  93 atttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagccccgaaaaat 154  Q
    ||||||||||||||||||||||| || | |||  || | |||||||||||||||| ||||||    
T  20473724 atttaatttgatgaaccaaatttgatcaaaaattttgatgaaccaaattagccccaaaaaat 20473663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 154
Target Start/End: Original strand, 20557829 - 20557890
Alignment:
Q  93 atttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagccccgaaaaat 154  Q
    ||||||||||||||||||||||| || | |||  || | |||||||||||||||| ||||||    
T  20557829 atttaatttgatgaaccaaatttgatcaaaaattttgatgaaccaaattagccccaaaaaat 20557890  T

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Target: scaffold0808 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0808
Description:

Target: scaffold0808; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 85 - 177
Target Start/End: Original strand, 4258 - 4351
Alignment:
Q  85 gaattgtaatttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattag-ccccgaaaaatatttatggtcatgacttatcaaa 177  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||    
T  4258 gaattgtaatttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagcccccgaaaaatgtttatggtcatgacttaccaaa 4351  T

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Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 88 - 177
Target Start/End: Complemental strand, 41742146 - 41742056
Alignment:
Q  88 ttgtaatttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagc-cccgaaaaatatttatggtcatgacttatcaaa 177  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||    
T  41742146 ttgtaatttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagcgcccaaaaaatatttatggtcatgacttaccaaa 41742056  T

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Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 88 - 166
Target Start/End: Original strand, 31905604 - 31905683
Alignment:
Q  88 ttgtaatttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagc-cccgaaaaatatttatggtcat 166  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  31905604 ttgtaatttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagcgcccaaaaaatatttatggtcat 31905683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 93 - 168
Target Start/End: Original strand, 10900310 - 10900385
Alignment:
Q  93 atttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagccccgaaaaatatttatggtcatga 168  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||  |||| ||||||||||||||    
T  10900310 atttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagccccataaaagatttatggtcatga 10900385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 95 - 168
Target Start/End: Complemental strand, 11018347 - 11018273
Alignment:
Q  95 ttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagcccc-gaaaaatatttatggtcatga 168  Q
    |||||||||||||||||||||||| | |||||||| ||||||||||||||||| | |||||||||||||||||||    
T  11018347 ttaatttgatgaaccaaatttaatcaaaaaacttagcgaaccaaattagcccctgtaaaatatttatggtcatga 11018273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 93 - 165
Target Start/End: Original strand, 40979597 - 40979669
Alignment:
Q  93 atttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagccccgaaaaatatttatggtca 165  Q
    |||||||||||||||||||||||||| ||||||| |||| |||||||||| ||||  ||||||||||||||||    
T  40979597 atttaatttgatgaaccaaatttaatcagaaaacataacaaaccaaattacccccataaaatatttatggtca 40979669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 98 - 146
Target Start/End: Complemental strand, 53582 - 53534
Alignment:
Q  98 atttgatgaaccaaatttaattagaaaacttaacgaaccaaattagccc 146  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  53582 atttgatgaaccgaatttaattagaaaacttaacgaaccaaattagccc 53534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 93 - 168
Target Start/End: Complemental strand, 33387619 - 33387544
Alignment:
Q  93 atttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagccccgaaaaatatttatggtcatga 168  Q
    |||||||||||||||||||||||||| | |||| |||| |||| ||||||||| |  |||||||||||||||||||    
T  33387619 atttaatttgatgaaccaaatttaatcaaaaaaattaatgaactaaattagcctcagaaaatatttatggtcatga 33387544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 95 - 177
Target Start/End: Complemental strand, 41040054 - 41039971
Alignment:
Q  95 ttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattag-ccccgaaaaatatttatggtcatgacttatcaaa 177  Q
    |||||||||||||| ||||||||| |||||||||| | || |||||||| ||||||||||| ||||||||||||| ||| ||||    
T  41040054 ttaatttgatgaacaaaatttaatcagaaaacttagcaaatcaaattagcccccgaaaaatgtttatggtcatgagttaccaaa 41039971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 95 - 168
Target Start/End: Complemental strand, 8958421 - 8958347
Alignment:
Q  95 ttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagccccga-aaaatatttatggtcatga 168  Q
    |||||||||||||||||||||||| || ||||||||| |||||||||| |||| | ||||| |||||||||||||    
T  8958421 ttaatttgatgaaccaaatttaatcaggaaacttaaccaaccaaattaacccccataaaatgtttatggtcatga 8958347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 93 - 160
Target Start/End: Complemental strand, 25256734 - 25256667
Alignment:
Q  93 atttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagccccgaaaaatatttat 160  Q
    |||||||||||||||||||||||||| | ||||  |||||||||||||||||| |  |||||||||||    
T  25256734 atttaatttgatgaaccaaatttaatcaaaaaatataacgaaccaaattagcctcagaaaatatttat 25256667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 93 - 160
Target Start/End: Complemental strand, 25320525 - 25320458
Alignment:
Q  93 atttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagccccgaaaaatatttat 160  Q
    |||||||||||||||||||||||||| | ||||  |||||||||||||||||| |  |||||||||||    
T  25320525 atttaatttgatgaaccaaatttaatcaaaaaatataacgaaccaaattagcctcagaaaatatttat 25320458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 107 - 168
Target Start/End: Original strand, 2526466 - 2526527
Alignment:
Q  107 accaaatttaattagaaaacttaacgaaccaaattagccccgaaaaatatttatggtcatga 168  Q
    |||||||||||| | |||| |||||||||||||||||||||  |||||||||| || |||||    
T  2526466 accaaatttaatcaaaaaatttaacgaaccaaattagccccataaaatatttacggacatga 2526527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 88 - 177
Target Start/End: Complemental strand, 43342201 - 43342111
Alignment:
Q  88 ttgtaatttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagcccc-gaaaaatatttatggtcatgacttatcaaa 177  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||    
T  43342201 ttgtaatttaatttgatgaaccaaatttaattagaaaacttaacaaaccaaattagcccctgaaaaatatttatggtcatgacttaccaaa 43342111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 88 - 160
Target Start/End: Complemental strand, 35458109 - 35458036
Alignment:
Q  88 ttgtaatttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattag-ccccgaaaaatatttat 160  Q
    |||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  35458109 ttgtaatttaatttgatgaatcatatttaattagaaaacttaacgaaccaaattagcccccgaaaaatgtttat 35458036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 93 - 168
Target Start/End: Original strand, 44002825 - 44002901
Alignment:
Q  93 atttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagccccga-aaaatatttatggtcatga 168  Q
    |||||||||||||||||||||||||| ||||||| |||| ||||||||||||||| | |||||||||||||||||||    
T  44002825 atttaatttgatgaaccaaatttaatcagaaaacataacaaaccaaattagcccccataaaatatttatggtcatga 44002901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 95 - 177
Target Start/End: Complemental strand, 37640679 - 37640596
Alignment:
Q  95 ttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagcccc-gaaaaatatttatggtcatgacttatcaaa 177  Q
    |||||||||||||| ||||||||| ||||||||||||||||||||||| |||| ||||||| ||||||||||||| ||| ||||    
T  37640679 ttaatttgatgaacaaaatttaatcagaaaacttaacgaaccaaattaacccctgaaaaatgtttatggtcatgagttaacaaa 37640596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 95 - 177
Target Start/End: Original strand, 7473698 - 7473781
Alignment:
Q  95 ttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattag-ccccgaaaaatatttatggtcatgacttatcaaa 177  Q
    |||||||||||||| ||||||||| ||||||||||  |||||||||||| ||||||||||| ||||||||||||| ||| ||||    
T  7473698 ttaatttgatgaacaaaatttaatcagaaaacttagtgaaccaaattagcccccgaaaaatgtttatggtcatgaattaccaaa 7473781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 95 - 166
Target Start/End: Complemental strand, 32497128 - 32497056
Alignment:
Q  95 ttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaatta-gccccgaaaaatatttatggtcat 166  Q
    ||||||||||||| |||||||||| |||||||||||||||||||||||   |||||||||| |||||||||||    
T  32497128 ttaatttgatgaatcaaatttaatcagaaaacttaacgaaccaaattattacccgaaaaatgtttatggtcat 32497056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 93 - 177
Target Start/End: Complemental strand, 12015775 - 12015691
Alignment:
Q  93 atttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagccccgaaaaatatttatggtcatgacttatcaaa 177  Q
    ||||||||| ||||||||||||| |||| |||| || |||||| ||||||||| |  ||||||||||||||||||| ||| ||||    
T  12015775 atttaatttaatgaaccaaatttgattaaaaaatttgacgaacgaaattagcctcataaaatatttatggtcatgatttaccaaa 12015691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 88 - 144
Target Start/End: Original strand, 37996891 - 37996946
Alignment:
Q  88 ttgtaatttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagc 144  Q
    |||||||||| ||||||||||||||||||||  |||||||||||||| |||||||||    
T  37996891 ttgtaattta-tttgatgaaccaaatttaatcggaaaacttaacgaatcaaattagc 37996946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 177
Target Start/End: Original strand, 17481005 - 17481051
Alignment:
Q  132 gaaccaaattagcccc-gaaaaatatttatggtcatgacttatcaaa 177  Q
    |||||||||||||||| |||||||||||||| |||||||||| ||||    
T  17481005 gaaccaaattagcccccgaaaaatatttatgatcatgacttaccaaa 17481051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 157
Target Start/End: Original strand, 43695141 - 43695205
Alignment:
Q  93 atttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagccccgaaaaatatt 157  Q
    ||||||||| ||| ||||  |||||| | ||||  |||||||||||||||||||| |||||||||    
T  43695141 atttaatttaatgtaccacgtttaataaaaaaatataacgaaccaaattagccccaaaaaatatt 43695205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 5e-34; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 88 - 177
Target Start/End: Complemental strand, 22936494 - 22936405
Alignment:
Q  88 ttgtaatttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagccccgaaaaatatttatggtcatgacttatcaaa 177  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||| ||||    
T  22936494 ttgtaatttaatttgatgaaccaaatttaattagaaaagttaacgaaccaaattagcccccaaaaatatttatggtcgtgacttaccaaa 22936405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 88 - 172
Target Start/End: Complemental strand, 45276327 - 45276243
Alignment:
Q  88 ttgtaatttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagc-cccgaaaaatatttatggtcatgactta 172  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||| ||||||||||||    
T  45276327 ttgtaatttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagcgcccaaaaaatgttta-ggtcatgactta 45276243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 88 - 177
Target Start/End: Original strand, 8416836 - 8416926
Alignment:
Q  88 ttgtaatttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagc-cccgaaaaatatttatggtcatgacttatcaaa 177  Q
    |||||||| ||| |||||||||||| ||||||||||||||| ||||||||||||||| |||||||||| ||||||||||||||||| ||||    
T  8416836 ttgtaattaaatatgatgaaccaaaattaattagaaaacttcacgaaccaaattagcacccgaaaaatgtttatggtcatgacttaccaaa 8416926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 93 - 168
Target Start/End: Original strand, 2025691 - 2025767
Alignment:
Q  93 atttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagccccga-aaaatatttatggtcatga 168  Q
    |||||||||||||||||||||||||| | |||||||||||||| ||||||||||| | ||||||||| |||||||||    
T  2025691 atttaatttgatgaaccaaatttaatcataaaacttaacgaactaaattagcccccataaaatatttgtggtcatga 2025767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 99 - 177
Target Start/End: Complemental strand, 35164295 - 35164216
Alignment:
Q  99 tttgatgaaccaaatttaattagaaaacttaacgaaccaaattagcc-ccgaaaaatatttatggtcatgacttatcaaa 177  Q
    |||||||||||||||||||| |||||||||||| ||||||||||||| |||| |||| ||||||||||||| ||| ||||    
T  35164295 tttgatgaaccaaatttaatcagaaaacttaaccaaccaaattagcctccgataaatgtttatggtcatgagttaccaaa 35164216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 95 - 177
Target Start/End: Complemental strand, 35802262 - 35802179
Alignment:
Q  95 ttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattag-ccccgaaaaatatttatggtcatgacttatcaaa 177  Q
    ||||||||||||||  |||||||| |||||||||||| ||||||||||| ||||||||||| ||||||||||||| ||| ||||    
T  35802262 ttaatttgatgaacacaatttaatcagaaaacttaacaaaccaaattagcccccgaaaaatgtttatggtcatgagttaccaaa 35802179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 93 - 168
Target Start/End: Original strand, 3590249 - 3590323
Alignment:
Q  93 atttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagccccgaaaaatatttatggtcatga 168  Q
    |||||||||||||||||||||||||| | |||| ||||||||| ||||||||| |  |||||||||||||||||||    
T  3590249 atttaatttgatgaaccaaatttaataaaaaaa-ttaacgaactaaattagcctcagaaaatatttatggtcatga 3590323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 93 - 165
Target Start/End: Original strand, 13015857 - 13015929
Alignment:
Q  93 atttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagccccgaaaaatatttatggtca 165  Q
    ||||||||||||||| |||||||||| | |||| |||||||| ||||||||| |  |||||||||||||||||    
T  13015857 atttaatttgatgaatcaaatttaatcaaaaaatttaacgaatcaaattagcacaaaaaaatatttatggtca 13015929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 95 - 168
Target Start/End: Complemental strand, 36821545 - 36821470
Alignment:
Q  95 ttaatttgatgaaccaaatttaat-tagaaaacttaacgaaccaaattag-ccccgaaaaatatttatggtcatga 168  Q
    ||||||||||||||||||||||||  | |||||||| ||||||||||||| |||||||||||||| ||||| ||||    
T  36821545 ttaatttgatgaaccaaatttaatcaaaaaaacttagcgaaccaaattagcccccgaaaaatattaatggttatga 36821470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 93 - 147
Target Start/End: Original strand, 33165970 - 33166024
Alignment:
Q  93 atttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagcccc 147  Q
    ||||||||||| ||| |||||||||| | |||| |||||||||||||||||||||    
T  33165970 atttaatttgaggaaacaaatttaatcaaaaaatttaacgaaccaaattagcccc 33166024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 93 - 168
Target Start/End: Original strand, 7637408 - 7637482
Alignment:
Q  93 atttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagccccgaaaaatatttatggtcatga 168  Q
    |||||||||||||||  ||||||||  |  ||| |||| | |||||||||||||| ||||||||||||||||||||    
T  7637408 atttaatttgatgaaataaatttaaacaataaatttaatg-accaaattagccccaaaaaatatttatggtcatga 7637482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 5e-34; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 88 - 172
Target Start/End: Complemental strand, 25472689 - 25472604
Alignment:
Q  88 ttgtaatttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattag-ccccgaaaaatatttatggtcatgactta 172  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  25472689 ttgtaatttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagcccccgaaaaatatttatggtaatgactta 25472604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 88 - 177
Target Start/End: Complemental strand, 30139753 - 30139663
Alignment:
Q  88 ttgtaatttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattag-ccccgaaaaatatttatggtcatgacttatcaaa 177  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||| ||||    
T  30139753 ttgtaatttaatttgataaaccaaatttaattagaaaacttaacgaaccaaattagcccccgaaaaatgtttacggtcatgacttaccaaa 30139663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 95 - 176
Target Start/End: Complemental strand, 43664733 - 43664652
Alignment:
Q  95 ttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagccccgaaaaatatttatggtcatgacttatcaa 176  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||| |||||||||| || |||||||    
T  43664733 ttaatttgatgaaccaaatttaatcagaaaatttaacgaaccaaattagcccccaaaaatgtttatggtcacgagttatcaa 43664652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 95 - 177
Target Start/End: Original strand, 26826552 - 26826635
Alignment:
Q  95 ttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattag-ccccgaaaaatatttatggtcatgacttatcaaa 177  Q
    ||||| |||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||| ||| ||||    
T  26826552 ttaatgtgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcccccgaaaaatgtttatggtcatgagttaccaaa 26826635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 95 - 177
Target Start/End: Original strand, 15000048 - 15000131
Alignment:
Q  95 ttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagcccc-gaaaaatatttatggtcatgacttatcaaa 177  Q
    |||||||||||||||||||||||| ||||||||||| ||||| |||||||||| ||||||| ||||||||||||| ||| ||||    
T  15000048 ttaatttgatgaaccaaatttaatcagaaaacttaaagaacctaattagcccctgaaaaatgtttatggtcatgagttaccaaa 15000131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 98 - 168
Target Start/End: Complemental strand, 47158137 - 47158067
Alignment:
Q  98 atttgatgaaccaaatttaattagaaaacttaacgaaccaaattagccccgaaaaatatttatggtcatga 168  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| ||  |||||||||||| ||||||    
T  47158137 atttgatgaaccatatttaattagaaaacttaacgaaccaaattagctccagaaaatatttatgatcatga 47158067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 93 - 176
Target Start/End: Complemental strand, 298579 - 298496
Alignment:
Q  93 atttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagccccgaaaaatatttatggtcatgacttatcaa 176  Q
    |||||||||||||||||||||||||| | |||| ||||| | |||||||||| ||  ||||||||||||||||||| |||||||    
T  298579 atttaatttgatgaaccaaatttaatcaaaaaatttaacaatccaaattagctccagaaaatatttatggtcatgagttatcaa 298496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 93 - 176
Target Start/End: Complemental strand, 2000089 - 2000007
Alignment:
Q  93 atttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagccccgaaaaatatttatggtcatgacttatcaa 176  Q
    ||||||||||| ||| |||||||||| | |||| ||||||||||||||||| ||| |||||||||||||||||||| |||||||    
T  2000089 atttaatttgacgaagcaaatttaatcaaaaaatttaacgaaccaaattag-cccaaaaaatatttatggtcatgagttatcaa 2000007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 95 - 177
Target Start/End: Complemental strand, 26827681 - 26827602
Alignment:
Q  95 ttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagccc-cgaaaaatatttatggtcatgacttatcaaa 177  Q
    ||||||||||||||||||||||||    |||||||||||||||||||||||| |||||||| ||||||||||||| ||| ||||    
T  26827681 ttaatttgatgaaccaaatttaat----aaacttaacgaaccaaattagccctcgaaaaatgtttatggtcatgagttaccaaa 26827602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 93 - 161
Target Start/End: Original strand, 32450929 - 32450996
Alignment:
Q  93 atttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagccccgaaaaatatttatg 161  Q
    ||||||||||||||||||||||||| || |||| |||||||||||||||| |||| |||| ||||||||    
T  32450929 atttaatttgatgaaccaaatttaa-taaaaaatttaacgaaccaaattatccccaaaaattatttatg 32450996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 93 - 177
Target Start/End: Complemental strand, 47085607 - 47085523
Alignment:
Q  93 atttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagccccgaaaaatatttatggtcatgacttatcaaa 177  Q
    |||||||||||||||||||||||||| | |||| |||  ||||||||||| || |  ||||||||||||||||||| ||| ||||    
T  47085607 atttaatttgatgaaccaaatttaatcaaaaaatttatggaaccaaattaacctcataaaatatttatggtcatgagttaccaaa 47085523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 95 - 177
Target Start/End: Original strand, 25970613 - 25970696
Alignment:
Q  95 ttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagcc-ccgaaaaatatttatggtcatgacttatcaaa 177  Q
    |||||||||||||||||||||||| |||||||||||   | ||||||||||  | |||||||||||||||||||| ||| ||||    
T  25970613 ttaatttgatgaaccaaatttaatgagaaaacttaatagatcaaattagccatcaaaaaatatttatggtcatgaattaccaaa 25970696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 95 - 177
Target Start/End: Original strand, 30825370 - 30825452
Alignment:
Q  95 ttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaatta-gccccgaaaaatatttatggtcatgacttatcaaa 177  Q
    |||||||||| ||||||||||||| |||||||||||| ||||||||||  |||||| |||| ||||||||||||| ||| ||||    
T  30825370 ttaatttgat-aaccaaatttaatcagaaaacttaaccaaccaaattatcccccgataaatgtttatggtcatgagttaccaaa 30825452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 161
Target Start/End: Complemental strand, 25191781 - 25191713
Alignment:
Q  93 atttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagccccgaaaaatatttatg 161  Q
    |||||||| ||||||||||| || || | || | |||||||||||||||| |||| |||||||||||||    
T  25191781 atttaattcgatgaaccaaagttgatcaaaagatttaacgaaccaaattaaccccaaaaaatatttatg 25191713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 177
Target Start/End: Complemental strand, 26169890 - 26169806
Alignment:
Q  93 atttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagccccgaaaaatatttatggtcatgacttatcaaa 177  Q
    |||||||||||||||||||||||||| | |||| ||||| |  |||||||  ||   ||||||||||| ||||||| ||| ||||    
T  26169890 atttaatttgatgaaccaaatttaatcaaaaaatttaacaattcaaattaatcctacaaaatatttatcgtcatgagttaccaaa 26169806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 147
Target Start/End: Original strand, 45202651 - 45202702
Alignment:
Q  95 ttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagcccc 147  Q
    ||||||| ||||||||| || ||| ||||||||||| ||||||||||||||||    
T  45202651 ttaatttaatgaaccaa-ttaaatcagaaaacttaaagaaccaaattagcccc 45202702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 90 - 177
Target Start/End: Original strand, 39251652 - 39251740
Alignment:
Q  90 gtaatttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattag-ccccgaaaaatatttatggtcatgacttatcaaa 177  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||    
T  39251652 gtaatttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagcccccgaaaaatgtttatggtcatgacttaccaaa 39251740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 88 - 177
Target Start/End: Complemental strand, 48254428 - 48254338
Alignment:
Q  88 ttgtaatttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagccc-cgaaaaatatttatggtcatgacttatcaaa 177  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||  ||||||| ||||||||||||||||||||||    
T  48254428 ttgtaatttaatttgatgaaccaaatttaattagaaaacttaaggaattaaattagcccttgaaaaatgtttatggtcatgacttatcaaa 48254338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 93 - 168
Target Start/End: Original strand, 30810886 - 30810962
Alignment:
Q  93 atttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagccccga-aaaatatttatggtcatga 168  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||||    
T  30810886 atttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcccccataaaatatttatggtcatga 30810962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 95 - 168
Target Start/End: Original strand, 28182550 - 28182624
Alignment:
Q  95 ttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattag-ccccgaaaaatatttatggtcatga 168  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  28182550 ttaatttgatgaaccaaatttaatcagaagacttaacgaaccaaattagcccccgaaaaatatttatggtcatga 28182624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 93 - 163
Target Start/End: Complemental strand, 50392740 - 50392669
Alignment:
Q  93 atttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagccccga-aaaatatttatggt 163  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||    
T  50392740 atttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcccccataaaatatttatggt 50392669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 95 - 177
Target Start/End: Original strand, 11263871 - 11263954
Alignment:
Q  95 ttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagccc-cgaaaaatatttatggtcatgacttatcaaa 177  Q
    |||||||||||||| ||||| ||| ||||||||||| ||||||||||||||| |||||||| ||||||||||||| ||||||||    
T  11263871 ttaatttgatgaacaaaattcaatcagaaaacttaatgaaccaaattagccctcgaaaaatgtttatggtcatgagttatcaaa 11263954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 95 - 177
Target Start/End: Original strand, 45150778 - 45150861
Alignment:
Q  95 ttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattag-ccccgaaaaatatttatggtcatgacttatcaaa 177  Q
    |||||||||||||| ||||||||| ||||||||||| |||||||||||| ||||||||||| ||||||||||||| ||| ||||    
T  45150778 ttaatttgatgaacaaaatttaatcagaaaacttaatgaaccaaattagcccccgaaaaatgtttatggtcatgaattaccaaa 45150861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 95 - 177
Target Start/End: Original strand, 42274697 - 42274780
Alignment:
Q  95 ttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattag-ccccgaaaaatatttatggtcatgacttatcaaa 177  Q
    ||||||||||||||||||||| || |||||||||| ||||||||||||| ||||||||||| ||||| ||||||| ||| ||||    
T  42274697 ttaatttgatgaaccaaatttgatcagaaaacttatcgaaccaaattagcccccgaaaaatgtttatagtcatgagttaccaaa 42274780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 95 - 177
Target Start/End: Original strand, 48181249 - 48181333
Alignment:
Q  95 ttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagcccc--gaaaaatatttatggtcatgacttatcaaa 177  Q
    ||||||| |||||||||||||||| |||||||||||||| |||||||||||||   |||||| ||||||||||||| ||| ||||    
T  48181249 ttaatttcatgaaccaaatttaatcagaaaacttaacgagccaaattagcccccgaaaaaatgtttatggtcatgagttaccaaa 48181333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 95 - 177
Target Start/End: Original strand, 51229907 - 51229990
Alignment:
Q  95 ttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattag-ccccgaaaaatatttatggtcatgacttatcaaa 177  Q
    ||||||||||||| |||||||||| ||||||||||||  |||||||||| ||||||||||  ||||| ||||||| ||||||||    
T  51229907 ttaatttgatgaatcaaatttaataagaaaacttaaccgaccaaattagcccccgaaaaaagtttatcgtcatgagttatcaaa 51229990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 91 - 168
Target Start/End: Complemental strand, 45489030 - 45488952
Alignment:
Q  91 taatttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagcc-ccgaaaaatatttatggtcatga 168  Q
    |||||| |||||||||||||||||||| ||||||| |||||||||||||||| || ||  |||||||||||||| ||||    
T  45489030 taatttgatttgatgaaccaaatttaactagaaaatttaacgaaccaaattaacctccagaaaatatttatggttatga 45488952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 95 - 176
Target Start/End: Complemental strand, 53687295 - 53687213
Alignment:
Q  95 ttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagcc-ccgaaaaatatttatggtcatgacttatcaa 176  Q
    |||||||||||| ||||||| ||| |||||||||||| ||||||||||||| || |||||| |||||| |||||| |||||||    
T  53687295 ttaatttgatgagccaaattaaataagaaaacttaaccaaccaaattagcctccaaaaaatgtttatgatcatgagttatcaa 53687213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 93 - 165
Target Start/End: Original strand, 28883868 - 28883940
Alignment:
Q  93 atttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagccccgaaaaatatttatggtca 165  Q
    ||||||||| ||| |||| ||||||| | || | ||||||||||||||||||||| |||||||||||||||||    
T  28883868 atttaatttaatgtaccacatttaatcaaaatatttaacgaaccaaattagccccaaaaaatatttatggtca 28883940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 93 - 165
Target Start/End: Original strand, 44328830 - 44328903
Alignment:
Q  93 atttaatttgatgaaccaaatttaattagaaaact-taacgaaccaaattagccccgaaaaatatttatggtca 165  Q
    |||||||||||| ||||||||||||| | ||||   |||||||||||||||||||  |||||||||||||||||    
T  44328830 atttaatttgataaaccaaatttaataaaaaaaaagtaacgaaccaaattagcccaaaaaaatatttatggtca 44328903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 95 - 147
Target Start/End: Original strand, 51407644 - 51407696
Alignment:
Q  95 ttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagcccc 147  Q
    ||||||||||||||| |||||||| |||||| |||||||| ||||||||||||    
T  51407644 ttaatttgatgaaccgaatttaatcagaaaatttaacgaaacaaattagcccc 51407696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 93 - 163
Target Start/End: Complemental strand, 44610745 - 44610676
Alignment:
Q  93 atttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagccccgaaaaatatttatggt 163  Q
    |||||||||||||||||||||||||| | ||||  ||||||| ||||||||| ||  ||||||||||||||    
T  44610745 atttaatttgatgaaccaaatttaatca-aaaatctaacgaatcaaattagctccataaaatatttatggt 44610676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 95 - 168
Target Start/End: Original strand, 42074572 - 42074642
Alignment:
Q  95 ttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattag-ccccgaaaaatatttatggtcatga 168  Q
    |||||||||||||||||||||||| |||||||||    ||||||  ||| ||||||||||| |||||||||||||    
T  42074572 ttaatttgatgaaccaaatttaatcagaaaactt----aaccaagctagcccccgaaaaatgtttatggtcatga 42074642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 8e-33; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 88 - 174
Target Start/End: Complemental strand, 30418318 - 30418231
Alignment:
Q  88 ttgtaatttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattag-ccccgaaaaatatttatggtcatgacttatc 174  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||    
T  30418318 ttgtaatttaatttgatgaaccaaatttaattagaaaacttaacgaatcaaattagcccccgaaaaatgtttatggtcatgacttatc 30418231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 88 - 177
Target Start/End: Complemental strand, 28963793 - 28963703
Alignment:
Q  88 ttgtaatttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagccc-cgaaaaatatttatggtcatgacttatcaaa 177  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||  ||||||| ||||||||||||||||||||||    
T  28963793 ttgtaatttaatttgatgaaccaaatttaattagaaaacttaacgaattaaattagcccttgaaaaatgtttatggtcatgacttatcaaa 28963703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 93 - 177
Target Start/End: Complemental strand, 50523791 - 50523706
Alignment:
Q  93 atttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagccccga-aaaatatttatggtcatgacttatcaaa 177  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||||||||||| | ||||||||||||||||||| ||| ||||    
T  50523791 atttaatttgatgaaccaaatttaatcagaaaatttaacgaaccaaattagcccccataaaatatttatggtcatgagttaccaaa 50523706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 95 - 177
Target Start/End: Complemental strand, 53663553 - 53663470
Alignment:
Q  95 ttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagcccc-gaaaaatatttatggtcatgacttatcaaa 177  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||| ||||||||||||| ||| ||||    
T  53663553 ttaatttgatgaaccaaatttaatcagaaaacttaacgaacctaattagcccctgaaaaatgtttatggtcatgagttaccaaa 53663470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 96 - 176
Target Start/End: Original strand, 8510339 - 8510419
Alignment:
Q  96 taatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagccccgaaaaatatttatggtcatgacttatcaa 176  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||||||   |||||| |||||||||||| |||||||    
T  8510339 taatttaatgaaccaaatttaatcagaaaacttaacgaaccaaattagccctagaaaataattatggtcatgaattatcaa 8510419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 101 - 172
Target Start/End: Complemental strand, 29385956 - 29385884
Alignment:
Q  101 tgatgaaccaaatttaattagaaaacttaacgaaccaaattag-ccccgaaaaatatttatggtcatgactta 172  Q
    ||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||    
T  29385956 tgatgaatcaaatttaattagaaaatttaacgaaccaaattagcccccgaaaaatatttaaggtcatgactta 29385884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 95 - 168
Target Start/End: Complemental strand, 22606278 - 22606204
Alignment:
Q  95 ttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattag-ccccgaaaaatatttatggtcatga 168  Q
    |||||||||||||| ||||||||| |||||||||| ||||||||||||| ||||||||||| |||||||||||||    
T  22606278 ttaatttgatgaacaaaatttaatcagaaaacttagcgaaccaaattagcccccgaaaaatgtttatggtcatga 22606204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 93 - 168
Target Start/End: Original strand, 39732988 - 39733064
Alignment:
Q  93 atttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagccccga-aaaatatttatggtcatga 168  Q
    |||||||||||||||||||||||||| ||||||| |||| |||||||||| |||| | |||||||||||||||||||    
T  39732988 atttaatttgatgaaccaaatttaatcagaaaacataacaaaccaaattaacccccataaaatatttatggtcatga 39733064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 93 - 168
Target Start/End: Complemental strand, 16203017 - 16202942
Alignment:
Q  93 atttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagccccgaaaaatatttatggtcatga 168  Q
    |||||||||||||||||||||||||| | |||| |||| |||| ||||||||| || |||||||||||||||||||    
T  16203017 atttaatttgatgaaccaaatttaatcaaaaaaattaatgaactaaattagcctcggaaaatatttatggtcatga 16202942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 95 - 168
Target Start/End: Original strand, 45105986 - 45106060
Alignment:
Q  95 ttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattag-ccccgaaaaatatttatggtcatga 168  Q
    |||||||||||||||||||||||| |||||||||||| |||||| |||| ||||||||| | |||||||||||||    
T  45105986 ttaatttgatgaaccaaatttaataagaaaacttaaccaaccaatttagcccccgaaaattgtttatggtcatga 45106060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 95 - 177
Target Start/End: Original strand, 48407132 - 48407215
Alignment:
Q  95 ttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattag-ccccgaaaaatatttatggtcatgacttatcaaa 177  Q
    |||||||||||||| ||||||||| | ||||| || |||| |||||||| ||||||||||||||||||||||||| ||| ||||    
T  48407132 ttaatttgatgaacaaaatttaatcataaaacgtagcgaatcaaattagcccccgaaaaatatttatggtcatgagttaccaaa 48407215  T

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Target: chr4; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 95 - 177
Target Start/End: Original strand, 49723960 - 49724043
Alignment:
Q  95 ttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattag-ccccgaaaaatatttatggtcatgacttatcaaa 177  Q
    |||||||||| ||||||||||||| |||||| ||||||||||||||||| ||  ||||||| ||||||||||||| ||| ||||    
T  49723960 ttaatttgataaaccaaatttaatcagaaaaattaacgaaccaaattagtccttgaaaaatgtttatggtcatgagttaccaaa 49724043  T

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Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 95 - 177
Target Start/End: Original strand, 38767971 - 38768054
Alignment:
Q  95 ttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagc-cccgaaaaatatttatggtcatgacttatcaaa 177  Q
    |||||||||||||| |||||||||  ||||||||| |||||||||||||| || ||||||| ||||||||| ||| ||| ||||    
T  38767971 ttaatttgatgaacaaaatttaatcggaaaacttagcgaaccaaattagcacctgaaaaatgtttatggtcgtgagttaccaaa 38768054  T

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Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 93 - 168
Target Start/End: Original strand, 51677276 - 51677351
Alignment:
Q  93 atttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagccccgaaaaatatttatggtcatga 168  Q
    |||||||||||||||||||||||||| | |||| | ||||| |||||||||| ||   ||||||||||| ||||||    
T  51677276 atttaatttgatgaaccaaatttaatcaaaaaattcaacgatccaaattagctccaggaaatatttatgatcatga 51677351  T

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Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 95 - 177
Target Start/End: Complemental strand, 53404029 - 53403951
Alignment:
Q  95 ttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagcc-ccgaaaaatatttatggtcatgacttatcaaa 177  Q
    |||||||||||||||||||      ||||||| |||||||||||||||||| ||||||||| ||||||||||||| ||| ||||    
T  53404029 ttaatttgatgaaccaaatc-----agaaaacataacgaaccaaattagccaccgaaaaatgtttatggtcatgagttaccaaa 53403951  T

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Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 168
Target Start/End: Complemental strand, 5937786 - 5937737
Alignment:
Q  120 agaaaacttaacgaaccaaattagccccga-aaaatatttatggtcatga 168  Q
    |||||||||||||||||||||||||||| | |||||||||||| ||||||    
T  5937786 agaaaacttaacgaaccaaattagcccccataaaatatttatgatcatga 5937737  T

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Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 146
Target Start/End: Original strand, 26457294 - 26457342
Alignment:
Q  98 atttgatgaaccaaatttaattagaaaacttaacgaaccaaattagccc 146  Q
    |||||||| ||| |||||||||||||||||| ||||| |||||||||||    
T  26457294 atttgatgtaccgaatttaattagaaaacttgacgaatcaaattagccc 26457342  T

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Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 161
Target Start/End: Original strand, 28911757 - 28911825
Alignment:
Q  93 atttaatttgatgaaccaaatttaattagaaaactt-aacgaaccaaattagccccgaaaaatatttatg 161  Q
    ||||||||||| || ||||||||||| | |||| || |||||||||||||||||||  ||||||||||||    
T  28911757 atttaatttgagga-ccaaatttaatcaaaaaaatttaacgaaccaaattagccccataaaatatttatg 28911825  T

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Target: scaffold0068 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 88 - 177
Target Start/End: Original strand, 37869 - 37959
Alignment:
Q  88 ttgtaatttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagcc-ccgaaaaatatttatggtcatgacttatcaaa 177  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| | |||||| ||||    
T  37869 ttgtaatttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagcctccgaaaaatgtttatggtaacgacttaccaaa 37959  T

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Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 85 - 177
Target Start/End: Original strand, 10683325 - 10683418
Alignment:
Q  85 gaattgtaatttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaatt-agccccgaaaaatatttatggtcatgacttatcaaa 177  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| | |||||| |||| |||||||| |||||||| ||||    
T  10683325 gaattgtaatttaatttgatgaaccaaatttaattagaaaatttaacaaaccaaattaacccccgataaatgtttatggtaatgacttaccaaa 10683418  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 93 - 165
Target Start/End: Original strand, 27825177 - 27825250
Alignment:
Q  93 atttaatttgatgaaccaaatttaatt-agaaaacttaacgaaccaaattagccccgaaaaatatttatggtca 165  Q
    ||||||||||||||||||||||||||  | |||| ||||||||||||||||||| | |||||||||||||||||    
T  27825177 atttaatttgatgaaccaaatttaatccaaaaaatttaacgaaccaaattagccacaaaaaatatttatggtca 27825250  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 93 - 162
Target Start/End: Complemental strand, 20838415 - 20838345
Alignment:
Q  93 atttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagcc-ccgaaaaatatttatgg 162  Q
    |||||||||||||||||||||||||| | |||||||||||||| |||||| || ||  |||||||||||||    
T  20838415 atttaatttgatgaaccaaatttaatcaaaaaacttaacgaactaaattaacctccataaaatatttatgg 20838345  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 107 - 168
Target Start/End: Original strand, 4146992 - 4147053
Alignment:
Q  107 accaaatttaattagaaaacttaacgaaccaaattagccccgaaaaatatttatggtcatga 168  Q
    |||||||||||| | |||| |||||||||||||||||||||  |||||||||| || |||||    
T  4146992 accaaatttaatcaaaaaatttaacgaaccaaattagccccataaaatatttacggacatga 4147053  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 93 - 168
Target Start/End: Original strand, 30134321 - 30134396
Alignment:
Q  93 atttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagccccgaaaaatatttatggtcatga 168  Q
    |||||||||||| ||||||||||||| | |||| |||||  |||||||||||||   |||||||| ||||| ||||    
T  30134321 atttaatttgataaaccaaatttaatcaaaaaagttaacataccaaattagcccaagaaaatattgatggttatga 30134396  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 118
Target Start/End: Original strand, 365771 - 365801
Alignment:
Q  88 ttgtaatttaatttgatgaaccaaatttaat 118  Q
    |||||||||||||||||||||||||||||||    
T  365771 ttgtaatttaatttgatgaaccaaatttaat 365801  T

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Target: scaffold0069 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 95 - 177
Target Start/End: Original strand, 16991 - 17074
Alignment:
Q  95 ttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagccccgaaaaa-tatttatggtcatgacttatcaaa 177  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| | ||||||||||||| ||| ||||    
T  16991 ttaatttgatgaaccaaatttatttaggaaacttaacgaaccaaattagccccgaaaaagtgtttatggtcatgagttaccaaa 17074  T

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Target: scaffold0097 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 95 - 177
Target Start/End: Complemental strand, 32980 - 32897
Alignment:
Q  95 ttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattag-ccccgaaaaatatttatggtcatgacttatcaaa 177  Q
    |||||||||||||| ||||||||| ||||||| ||||||||||||| || ||||||||||||||||||||||||| ||| ||||    
T  32980 ttaatttgatgaacaaaatttaatcagaaaacctaacgaaccaaatcagcccccgaaaaatatttatggtcatgagttaccaaa 32897  T

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Target: scaffold0006 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 95 - 177
Target Start/End: Original strand, 91716 - 91799
Alignment:
Q  95 ttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagccccgaaaaa-tatttatggtcatgacttatcaaa 177  Q
    |||||||||||||||||||||| | |||||| |||||||||||||| |||||||||||| | ||||||||||||| ||| ||||    
T  91716 ttaatttgatgaaccaaatttattcagaaaatttaacgaaccaaatcagccccgaaaaagtgtttatggtcatgaattaccaaa 91799  T

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