View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1596_low_79 (Length: 282)
Name: NF1596_low_79
Description: NF1596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1596_low_79 |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 18 - 272
Target Start/End: Complemental strand, 36531877 - 36531623
Alignment:
| Q |
18 |
gtttgaagattgtgacttcattggcttggacacaggaataaagccatccttactcttctcatctttatgttgcttaccgactccattagcacatgttttc |
117 |
Q |
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| T |
36531877 |
gtttgaagattgtgacttcattggcttggacacaggaataaagccatccttactcttctcatctttatgttgcttaccaactccattagcacatgttttc |
36531778 |
T |
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| Q |
118 |
atacacgaaggatacgacggcacaaaagtgtctgcacatccactaccaacggatgttccaccattacttttacaggctggttttggtggatcctgcgttg |
217 |
Q |
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| T |
36531777 |
atacatgaaggatacgacggcacaaaagtgtctgcacatccactactaacggatgttccaccattacttttacaggctggttttggtggatcctgcgttg |
36531678 |
T |
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| Q |
218 |
gaacctttttcggggcaccaaactgtacgaatgatgggaaagtctgtggattcat |
272 |
Q |
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| T |
36531677 |
gaacctttttcggggcaccaaactgtacgaatgatgggaaagtctgtggattcat |
36531623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 28 - 255
Target Start/End: Original strand, 26305544 - 26305771
Alignment:
| Q |
28 |
tgtgacttcattggcttggacacaggaataaagccatccttactcttctcatctttatgttgcttaccgactccattagcacatgttttcatacacgaag |
127 |
Q |
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| T |
26305544 |
tgtgactccattggtttggacaggggaacatagccatacttactcttttcatcattaagttgcttaccaaccccagcggcagaggttttcatacatgaag |
26305643 |
T |
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| Q |
128 |
gatacgacggcacaaaagtgtctgcacatccactaccaacggatgttccaccattacttttacaggctggttttggtggatcctgcgttggaaccttttt |
227 |
Q |
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| T |
26305644 |
gatatgactgcacaaaagcatctgcatatctaccaccaaggggttttccaccattacttttggaggccgcttttggtggagcctgcatgggagcattttt |
26305743 |
T |
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| Q |
228 |
cggggcaccaaactgtacgaatgatggg |
255 |
Q |
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| T |
26305744 |
ccgggcacgaaaccgtacaaatgatggg |
26305771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 20628386 - 20628470
Alignment:
| Q |
18 |
gtttgaagattgtgacttcattggcttggacacaggaataaagccatccttactcttctcatctttatgttgcttaccgactcca |
102 |
Q |
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| T |
20628386 |
gtttgaggcttgtgactccattggtttggacacaggaacatagccatccttacttttttcatctttatgttgcttaccaactcca |
20628470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 130
Target Start/End: Complemental strand, 36553047 - 36552935
Alignment:
| Q |
18 |
gtttgaagattgtgacttcattggcttggacacaggaataaagccatccttactcttctcatctttatgttgcttaccgactccattagcacatgttttc |
117 |
Q |
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| T |
36553047 |
gtttgaggattgtgactccgttggtctggacacaggaacatagccatccttgctctcttcatctatatgttgcttagcaactccattaggacatgttctc |
36552948 |
T |
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| Q |
118 |
atacacgaaggat |
130 |
Q |
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| T |
36552947 |
atatatgaaggat |
36552935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 239
Target Start/End: Complemental strand, 36525396 - 36525330
Alignment:
| Q |
173 |
ttccaccattacttttacaggctggttttggtggatcctgcgttggaacctttttcggggcaccaaa |
239 |
Q |
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| T |
36525396 |
ttccacgattacttttagaggctagttttggcggagcctgcattcgagcctttttcggggcaccaaa |
36525330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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