View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1596_low_8 (Length: 569)
Name: NF1596_low_8
Description: NF1596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1596_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 511; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 33 - 555
Target Start/End: Complemental strand, 50767470 - 50766949
Alignment:
| Q |
33 |
tgttactttgattaactggatcagtggcattaaaatcaaggtgattaattctagatgatatctacaggttaaattctagtatatgcagattgaaccacac |
132 |
Q |
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| T |
50767470 |
tgttactttgattaactggatcagtggcattaaaatcaaggtgattaattctagatgatatctacaggttaaattctagtatatgcagattgaaccacac |
50767371 |
T |
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| Q |
133 |
atttattgaaccaagatgttgcatgaatgaatccgaatggaaatcaaatgattcaagtggcgtggctttgaagaagttcaagaaagacagcgtttacatt |
232 |
Q |
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| T |
50767370 |
atttattgaaccaagatgttgcatgaatgaatccgaatggaaatcaaatgattcaagtggcgtggctttgaagaagttcaagaaagacagcgtttacatt |
50767271 |
T |
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| Q |
233 |
gataaaactggcaacttaaggaacttcaatcacaaaaaactttccaggaaaaaatgtaaatctattctatactctcctacctgaaacacaacacaagttt |
332 |
Q |
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| T |
50767270 |
gataaaactggcaacttaaggaacttcaatcacaaaaaactttccaggaaaaaatgtaa-tctattctatactctcctacctgaaacacaacacaagttt |
50767172 |
T |
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| Q |
333 |
tgtatgtgtaaacagtgttgttattttctttgagtaggtggttctttgagaggaagaggatggaagtttggttctggatttgttgatgggattttcccag |
432 |
Q |
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| T |
50767171 |
tgtatgtgtaaacagtgttgttattttctttgagtaggtggttctttgagaggaagaggatggaagtttggttctggatttgttgatgggattttcccag |
50767072 |
T |
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| Q |
433 |
tgttgagtcccactgcactgcagattttggagtatcttcaaaaggaagtggattctgagagaatttggggttcactggataagcttccaccatctcttga |
532 |
Q |
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| T |
50767071 |
tgttgagtcccactgcactgcagattttggagtatcttcaaaaggaagtggattctgagagaatttggggttcactggataagcttccaccatctcttga |
50766972 |
T |
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| Q |
533 |
tgcatgggatgatgttttaactg |
555 |
Q |
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| T |
50766971 |
tgcatgggatgacgttttaactg |
50766949 |
T |
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