View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1596_low_80 (Length: 278)

Name: NF1596_low_80
Description: NF1596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1596_low_80
NF1596_low_80
[»] chr5 (3 HSPs)
chr5 (11-263)||(30319084-30319342)
chr5 (33-137)||(8418719-8418823)
chr5 (94-235)||(29170170-29170311)
[»] chr1 (2 HSPs)
chr1 (11-261)||(2344239-2344495)
chr1 (43-243)||(24010184-24010389)
[»] chr2 (2 HSPs)
chr2 (11-263)||(3646692-3646947)
chr2 (11-263)||(15635364-15635619)
[»] chr7 (3 HSPs)
chr7 (11-263)||(35638789-35639045)
chr7 (33-249)||(7485846-7486062)
chr7 (163-235)||(7627158-7627230)
[»] chr4 (4 HSPs)
chr4 (94-235)||(10716774-10716915)
chr4 (94-235)||(10930544-10930685)
chr4 (94-169)||(10681485-10681560)
chr4 (94-169)||(10895125-10895200)


Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 11 - 263
Target Start/End: Complemental strand, 30319342 - 30319084
Alignment:
Q  11 caaaggggaaaagaaaac------gaacaagaacaaggaaagtaactcatagaaagctcatgaatcaatctggtaacctactcgcggagcgagtattgtg 104  Q
    ||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  30319342 caaaggggaaaagaaaacaaacaagaacaagaacaaggaaagtaactcatagaaagctcatgaatcaatctggtaacctacttgcggagcgagtattgtg 30319243  T
Q  105 aatccgaaaacccttctgcttcttcttctttgtggatcgagacgccacctcaatgtagggctcttccgaagcagcagtgcggttcctcagataattgata 204  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30319242 aatccgaaaacccttctgcttctttttctttgtggatcgagacgccacctcaatgtagggctcttccgaagcagcagtgcggttcctcagataattgata 30319143  T
Q  205 gcggcctctctttcttcttcatcagtgtaaagttgaggcacaaagttcctatcatcatt 263  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30319142 gcggcctctctttcttcttcatcagtgtaaagttgaggcacaaagttcctatcatcatt 30319084  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 33 - 137
Target Start/End: Original strand, 8418719 - 8418823
Alignment:
Q  33 aagaacaaggaaagtaactcatagaaagctcatgaatcaatctggtaacctactcgcggagcgagtattgtgaatccgaaaacccttctgcttcttcttc 132  Q
    ||||||| | ||||||||||| | ||||| ||||| ||||||  ||||||||| |   ||||||||||| ||||  ||||||||||||| ||| ||||||    
T  8418719 aagaacatgaaaagtaactcaaataaagcccatgagtcaatcaagtaacctacccctagagcgagtattatgaactcgaaaacccttctccttattcttc 8418818  T
Q  133 tttgt 137  Q
    |||||    
T  8418819 tttgt 8418823  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 94 - 235
Target Start/End: Original strand, 29170170 - 29170311
Alignment:
Q  94 cgagtattgtgaatccgaaaacccttctgcttcttcttctttgtggatcgagacgccacctcaatgtagggctcttccgaagcagcagtgcggttcctca 193  Q
    |||||||| |||| | |||||||||||||||||||||| || ||||    |||| |||| ||| || |||||||||| |  |||||||  || ||| |||    
T  29170170 cgagtattatgaacctgaaaacccttctgcttcttctttttcgtggccttagacaccacttcagtgaagggctcttctgtggcagcagaacgattcttca 29170269  T
Q  194 gataattgatagcggcctctctttcttcttcatcagtgtaaa 235  Q
     |||  |||| || |||||||| ||||| |||||||||||||    
T  29170270 aatatatgattgccgcctctctatcttcctcatcagtgtaaa 29170311  T

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Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 11 - 261
Target Start/End: Complemental strand, 2344495 - 2344239
Alignment:
Q  11 caaaggggaaaagaaaacgaacaagaacaag------gaaagtaactcatagaaagctcatgaatcaatctggtaacctactcgcggagcgagtattgtg 104  Q
    |||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  2344495 caaaggggaaaagaaaacgaacaagaacaagaacaaggaaagtaactcatagaaagctcatgaatcaatctggtaacctacccgcggagcgagtattgtg 2344396  T
Q  105 aatccgaaaacccttctgcttcttcttctttgtggatcgagacgccacctcaatgtagggctcttccgaagcagcagtgcggttcctcagataattgata 204  Q
    || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||    
T  2344395 aacccgaaaacccttctgcttcttcttctttgtggatcgagactccacctcaatgtagggctcttccgaagcagcagtgtggtttctcagataactgata 2344296  T
Q  205 gcggcctctctttcttcttcatcagtgtaaagttgaggcacaaagttcctatcatca 261  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  2344295 gcggcctctctttcttcttcatcagtgtaaagttgaggcacaaagttcctagcatca 2344239  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 43 - 243
Target Start/End: Original strand, 24010184 - 24010389
Alignment:
Q  43 aaagtaactcatagaaagctcatgaatcaatctggtaacctactcgcggagcgagtattgtg--aatccgaaaacccttctgctt---cttcttctttgt 137  Q
    ||||||||||| |||||| | |||| |||||| |||||||||  |   | ||||||||||||  || ||||||||||||||||||   |||||| |||||    
T  24010184 aaagtaactcaaagaaagttgatgagtcaatcaggtaacctaaccttagtgcgagtattgtgtgaacccgaaaacccttctgcttacccttcttatttgt 24010283  T
Q  138 ggatcgagacgccacctcaatgtagggctcttccgaagcagcagtgcggttcctcagataattgatagcggcctctctttcttcttcatcagtgtaaagt 237  Q
     | || |||| ||||||||||| |||| |||||  || ||| ||   ||||||||| ||||||||||||  ||||||| ||||| ||||| | |||||||    
T  24010284 tgctctagactccacctcaatgaagggttcttcaaaaacagtagaaaggttcctcaaataattgatagccacctctctctcttcctcatctgagtaaagt 24010383  T
Q  238 tgaggc 243  Q
    ||||||    
T  24010384 tgaggc 24010389  T

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Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 11 - 263
Target Start/End: Complemental strand, 3646947 - 3646692
Alignment:
Q  11 caaaggggaaaagaaaacgaacaagaacaag------gaaagtaactcatagaaagctcatgaatcaatctggtaacctactcgcggagcgagtattgtg 104  Q
    |||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  3646947 caaaggggaaaagaaaacgaacaagaacaagaacaaggaaagtaactcatagaaagctcatgaatcaatctggtaacctacccgcggagcgagtattgtg 3646848  T
Q  105 aatccgaaaacccttctgcttcttcttctttgtggatcgagacgccacctcaatgtagggctcttccgaagcagcagtgcggttcctcagataattgata 204  Q
    || ||||||||||||||||||||||||   ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  3646847 aacccgaaaacccttctgcttcttctt---tgtggatcgagactccacctcaatgtagggctcttccgaagcagtagtgcggttcctcagataattgata 3646751  T
Q  205 gcggcctctctttcttcttcatcagtgtaaagttgaggcacaaagttcctatcatcatt 263  Q
    |||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||    
T  3646750 gcggcctctctttctttttcatcagtgtaaagttgaggcacagagttcctagcatcatt 3646692  T

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Target: chr2; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 11 - 263
Target Start/End: Complemental strand, 15635619 - 15635364
Alignment:
Q  11 caaaggggaaaagaaaacgaacaagaacaaggaaagtaactcatagaaagctcatgaatcaatctggtaacctactcgcggagcgagtattgtgaatccg 110  Q
    ||||||||||||||||| |||||||||||||||| |||||||| ||||||| ||||||||||||| ||||||||| ||| |||||||||||||||| | |    
T  15635619 caaaggggaaaagaaaaagaacaagaacaaggaaggtaactcaaagaaagcccatgaatcaatctagtaacctacccgcagagcgagtattgtgaacctg 15635520  T
Q  111 aaaacccttctgctt---cttcttctttgtggatcgagacgccacctcaatgtagggctcttccgaagcagcagtgcggttcctcagataattgatagcg 207  Q
    ||| |||||||||||   ||||||||||||| | |||||| | ||||||||| |||||||||| ||||||| ||  |||||||||| |||||||||||||    
T  15635519 aaagcccttctgcttattcttcttctttgtgcaccgagactcaacctcaatgaagggctcttctgaagcagtagaacggttcctcaaataattgatagcg 15635420  T
Q  208 gcctctctttcttcttcatcagtgtaaagttgaggcacaaagttcctatcatcatt 263  Q
    |||||||||||||| |||||||||||||||||||||||||||||| || |||||||    
T  15635419 gcctctctttcttcctcatcagtgtaaagttgaggcacaaagttcttagcatcatt 15635364  T

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Target: chr7 (Bit Score: 79; Significance: 5e-37; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 11 - 263
Target Start/End: Original strand, 35638789 - 35639045
Alignment:
Q  11 caaaggggaaaagaaaacgaaca-agaacaaggaaagtaactcatagaaagctcatgaatcaatctggtaacctactcgcggagcgagtattgtgaatcc 109  Q
    ||||||||||||||||| ||||  | |||||| ||| ||||||| ||||||| ||||||||||| ||||| ||||||||| |||||| |||||||||  |    
T  35638789 caaaggggaaaagaaaaagaacggaaaacaagaaaaataactcaaagaaagcccatgaatcaatttggtaccctactcgcagagcgaatattgtgaactc 35638888  T
Q  110 gaaaacccttctgctt---cttcttctttgtggatcgagacgccacctcaatgtagggctcttccgaagcagcagtgcggttcctcagataattgatagc 206  Q
    | ||| | || |||||   |||||||||||||||   | || ||||||||||| | ||||||| ||||||||||| || ||||||||||||||||||||     
T  35638889 gtaaatcattgtgcttattcttcttctttgtggacttaaactccacctcaatgaaaggctctttcgaagcagcagagcagttcctcagataattgatagt 35638988  T
Q  207 ggcctctctttcttcttcatcagtgtaaagttgaggcacaaagttcctatcatcatt 263  Q
    |||  | || ||||| ||||||  |||||||||| || ||||||| ||| |||||||    
T  35638989 ggcgaccctctcttcctcatcaaagtaaagttgaagcgcaaagttgctagcatcatt 35639045  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 33 - 249
Target Start/End: Original strand, 7485846 - 7486062
Alignment:
Q  33 aagaacaaggaaagtaactcatagaaagctcatgaatcaatctggtaacctactcgcggagcgagtattgtgaatccgaaaacccttctgcttcttcttc 132  Q
    ||||||| | ||||||||||| ||||||   |||| ||||||||||| ||||| |    ||||||||| |||||   |||||||||||||||| ||||||    
T  7485846 aagaacaggaaaagtaactcaaagaaagtcgatgagtcaatctggtatcctacacctatagcgagtat-gtgaactagaaaacccttctgcttattcttc 7485944  T
Q  133 tt---tgtggatcgagacgccacctcaatgtagggctcttccgaagcagcagtgcggttcctcagataattgatagcggcctctctttcttcttcatcag 229  Q
    ||   ||||| || |||| ||||||||||| |||| ||||||||||||| ||  |||||||||| |||||||||| | || | ||  ||||| ||||| |    
T  7485945 ttatttgtggctctagactccacctcaatgaagggttcttccgaagcagtagaacggttcctcaaataattgatatccgcttatc--tcttcctcatccg 7486042  T
Q  230 tgtaaagttgaggcacaaag 249  Q
    |||||||| ||||| |||||    
T  7486043 tgtaaagtcgaggcccaaag 7486062  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 235
Target Start/End: Original strand, 7627158 - 7627230
Alignment:
Q  163 ggctcttccgaagcagcagtgcggttcctcagataattgatagcggcctctctttcttcttcatcagtgtaaa 235  Q
    |||||||| | ||||| || ||||||| ||| |||||||||| | |||||| | |||||||||||||| ||||    
T  7627158 ggctcttctgtagcagtagagcggttcttcaaataattgatatcagcctctatctcttcttcatcagtataaa 7627230  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 94 - 235
Target Start/End: Original strand, 10716774 - 10716915
Alignment:
Q  94 cgagtattgtgaatccgaaaacccttctgcttcttcttctttgtggatcgagacgccacctcaatgtagggctcttccgaagcagcagtgcggttcctca 193  Q
    |||||||| ||||||  ||||||||||||||||||||| || |||| || |||| |||||||| || || |||||| ||  |||||||  |||||| |||    
T  10716774 cgagtattatgaatctaaaaacccttctgcttcttctttttcgtggctctagacaccacctcagtgaagtgctctttcgtggcagcagaacggttcttca 10716873  T
Q  194 gataattgatagcggcctctctttcttcttcatcagtgtaaa 235  Q
     |||  |||| || |||||||| ||||| ||||||| |||||    
T  10716874 aatatctgattgccgcctctctctcttcctcatcagggtaaa 10716915  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 94 - 235
Target Start/End: Original strand, 10930544 - 10930685
Alignment:
Q  94 cgagtattgtgaatccgaaaacccttctgcttcttcttctttgtggatcgagacgccacctcaatgtagggctcttccgaagcagcagtgcggttcctca 193  Q
    |||||||| ||||||  ||||||||||||||||||||| || |||| || |||| |||||||| || || |||||| ||  |||||||  |||||| |||    
T  10930544 cgagtattatgaatctaaaaacccttctgcttcttctttttcgtggctctagacaccacctcagtgaagtgctctttcgtggcagcagaacggttcttca 10930643  T
Q  194 gataattgatagcggcctctctttcttcttcatcagtgtaaa 235  Q
     |||  |||| || |||||||| ||||| ||||||| |||||    
T  10930644 aatatctgattgccgcctctctctcttcctcatcagggtaaa 10930685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 94 - 169
Target Start/End: Original strand, 10681485 - 10681560
Alignment:
Q  94 cgagtattgtgaatccgaaaacccttctgcttcttcttctttgtggatcgagacgccacctcaatgtagggctctt 169  Q
    |||||||| |||||| |||||||| ||||||||||||| || ||||  | |||| |||||||| || |||||||||    
T  10681485 cgagtattatgaatctgaaaacccatctgcttcttctttttcgtggccctagacaccacctcagtgaagggctctt 10681560  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 94 - 169
Target Start/End: Original strand, 10895125 - 10895200
Alignment:
Q  94 cgagtattgtgaatccgaaaacccttctgcttcttcttctttgtggatcgagacgccacctcaatgtagggctctt 169  Q
    |||||||| |||||| |||||||| ||||||||||||| || ||||  | |||| |||||||| || |||||||||    
T  10895125 cgagtattatgaatctgaaaacccatctgcttcttctttttcgtggccctagacaccacctcagtgaagggctctt 10895200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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