View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1596_low_85 (Length: 260)
Name: NF1596_low_85
Description: NF1596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1596_low_85 |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 9 - 253
Target Start/End: Complemental strand, 50410828 - 50410584
Alignment:
| Q |
9 |
tataatttattctgtagtttatgaagactcaagagtcgatgtttgtgaacaatatgatggctaataagtcaacactgttgactaaagattgttcatcttt |
108 |
Q |
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| T |
50410828 |
tataatttattctgtagtttatgaagactcaagggtcgatgtttgtgaacaatatgatggctaataagtcaacattgttgactaaagattgttcatcttt |
50410729 |
T |
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| Q |
109 |
cactcaaggaagaggggatagttttcagaatcataaatcaacctccagttactttgctggatcttttcttccttggcattggtcagtgtttgcattctca |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50410728 |
cactcaaggaagaggggatagttttcagaatcataaatcaacctccagttactttgctggatcttttcttccttggcattggtcagtgtttgcattctca |
50410629 |
T |
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| Q |
209 |
tgctgttgttcattctaggattcaattatgttatcttctgtgctg |
253 |
Q |
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| T |
50410628 |
tgctgttgttcattctaggattcaattatgttatcttctgtgctg |
50410584 |
T |
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