View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1596_low_92 (Length: 251)
Name: NF1596_low_92
Description: NF1596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1596_low_92 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 149; Significance: 8e-79; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 59 - 251
Target Start/End: Complemental strand, 8739652 - 8739460
Alignment:
| Q |
59 |
tgtcagtctcaagttctgaggtttgcaatctccccctaagtttgtgatagcccattaagatgaggtttgcgatctccccctaagtctcatccgagttcat |
158 |
Q |
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| T |
8739652 |
tgtcagtctcaagttctaaggtttgcaagctccccctaagtctgtgatagtccattaagacgaggtttgcgatctccccctaagtcttatccgagttctt |
8739553 |
T |
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| Q |
159 |
caagttcatccttaatcactgttgagtgcatcaaaacaaataacaatataacatatcacaacatcaacaagatatcagattttttatcacaca |
251 |
Q |
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| T |
8739552 |
taagttcatccttaatcactgttgagtgcattagaacaaataacaatataacatatcacaacatcaacaagatatcagattttttgtcacaca |
8739460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 59 - 251
Target Start/End: Complemental strand, 9091890 - 9091698
Alignment:
| Q |
59 |
tgtcagtctcaagttctgaggtttgcaatctccccctaagtttgtgatagcccattaagatgaggtttgcgatctccccctaagtctcatccgagttcat |
158 |
Q |
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||||||||||||||||| |||||||||| |||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||| |||||||||| | |
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| T |
9091890 |
tgtcagtctcaagttctaaggtttgcaagctccccctaagtctgtgatagtccattaagacgaggtttgcgatctccccctaagtcttatccgagttctt |
9091791 |
T |
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| Q |
159 |
caagttcatccttaatcactgttgagtgcatcaaaacaaataacaatataacatatcacaacatcaacaagatatcagattttttatcacaca |
251 |
Q |
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| T |
9091790 |
taagttcatccttaatcactgttgagtgcattagaacaaataacaatataacatatcacaacatcaacaagatatcagattttttgtcacaca |
9091698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 91 - 201
Target Start/End: Original strand, 23126990 - 23127101
Alignment:
| Q |
91 |
cccctaagtttgtgatagcccattaagatgaggtttgcgatctccccctaagtctcat-ccgagttcatcaagttcatccttaatcactgttgagtgcat |
189 |
Q |
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||||| ||| |||||||| |||||||| |||||||||| | |||| ||||||||| || || ||||||| || ||||| |||| ||||| |||||||||| |
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| T |
23126990 |
cccctgagtctgtgatagtccattaaggtgaggtttgcaagctcctcctaagtcttattcctagttcattaaattcattcttagtcactcttgagtgcat |
23127089 |
T |
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| Q |
190 |
caaaacaaataa |
201 |
Q |
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| T |
23127090 |
cagaacaaataa |
23127101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 18566362 - 18566398
Alignment:
| Q |
19 |
tagacttcaggatttgaggtttgcaagctctccctga |
55 |
Q |
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| T |
18566362 |
tagacttcaggatctgaggtttgcaagctccccctga |
18566398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 25935829 - 25935793
Alignment:
| Q |
21 |
gacttcaggatttgaggtttgcaagctctccctgagt |
57 |
Q |
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| T |
25935829 |
gacttcaggatttgaggtttgtaagctccccctgagt |
25935793 |
T |
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