View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1596_low_98 (Length: 249)

Name: NF1596_low_98
Description: NF1596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1596_low_98
NF1596_low_98
[»] chr6 (18 HSPs)
chr6 (37-249)||(10579181-10579390)
chr6 (46-249)||(6596318-6596518)
chr6 (203-249)||(6436835-6436881)
chr6 (203-249)||(7993632-7993678)
chr6 (45-125)||(7132143-7132223)
chr6 (205-248)||(6432759-6432802)
chr6 (45-111)||(6423743-6423809)
chr6 (45-121)||(6410532-6410608)
chr6 (203-243)||(19633024-19633064)
chr6 (208-247)||(6410627-6410666)
chr6 (204-235)||(6423833-6423864)
chr6 (45-110)||(6403407-6403472)
chr6 (203-248)||(6403502-6403547)
chr6 (51-104)||(6427025-6427078)
chr6 (45-97)||(6594124-6594176)
chr6 (205-249)||(7132234-7132278)
chr6 (205-249)||(7135157-7135201)
chr6 (205-249)||(7138080-7138124)
[»] chr5 (1 HSPs)
chr5 (208-249)||(17205662-17205703)
[»] chr1 (3 HSPs)
chr1 (204-249)||(30827723-30827768)
chr1 (203-246)||(33161122-33161165)
chr1 (205-249)||(7555124-7555168)
[»] chr4 (1 HSPs)
chr4 (210-247)||(10633967-10634004)


Alignment Details
Target: chr6 (Bit Score: 183; Significance: 4e-99; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 37 - 249
Target Start/End: Complemental strand, 10579390 - 10579181
Alignment:
Q  37 gtgttgtaaagattcaaatgttgaatacatggacactttgataacagagagtgaattccattaatgaaatcagttcgattcttgaccaaccgacgttttg 136  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  10579390 gtgttgtaaagactcaaatgttgaatacatggacactttgataacagagagtgaattccattaatgaaatcagttcgattgttgaccaaccgacgttttg 10579291  T
Q  137 ataacagagagtgacttcctccattcttgaaaatagtttgacttttgagaatagggcaactgagttcgaggttgagttctttgagcaatgggaaacaatc 236  Q
    |||||||||| |||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10579290 ataacagagattgact---tccattcttgaaaatagtttgacttttgagaatagggcaactgagttcgaggttgagttctttgagcaatgggaaacaatc 10579194  T
Q  237 ggcaatgagtaac 249  Q
    ||||| |||||||    
T  10579193 ggcaacgagtaac 10579181  T

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Target: chr6; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 46 - 249
Target Start/End: Complemental strand, 6596518 - 6596318
Alignment:
Q  46 agattcaaatgttgaatacatggacactttgataacagagagtgaattccattaatgaaatcagttcgattcttgaccaaccgacgttttgataacagag 145  Q
    |||||||||||||||||| || |||| ||||||||||||||||||||| | |||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  6596518 agattcaaatgttgaataaatcgacaatttgataacagagagtgaatttcgttaatgaaatcagttcgattgttgaccaactgacgttttgataacagag 6596419  T
Q  146 agtgacttcctccattcttgaaaatagtttgacttttgagaatagggcaactgagttcgaggttgagttctttgagcaatgggaaacaatcggcaatgag 245  Q
    ||||| |   ||||||||||||| ||||||||| || || |||||||  | ||| ||||| |||||||||||||||||||||||||||||| ||||||||    
T  6596418 agtgagt---tccattcttgaaattagtttgacattggaaaatagggttattgatttcgatgttgagttctttgagcaatgggaaacaatcagcaatgag 6596322  T
Q  246 taac 249  Q
    ||||    
T  6596321 taac 6596318  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 203 - 249
Target Start/End: Original strand, 6436835 - 6436881
Alignment:
Q  203 cgaggttgagttctttgagcaatgggaaacaatcggcaatgagtaac 249  Q
    |||||||||||| ||||||||| ||||||||||||||||||||||||    
T  6436835 cgaggttgagttgtttgagcaaagggaaacaatcggcaatgagtaac 6436881  T

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Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 203 - 249
Target Start/End: Complemental strand, 7993678 - 7993632
Alignment:
Q  203 cgaggttgagttctttgagcaatgggaaacaatcggcaatgagtaac 249  Q
    |||||||||||||||||||||| |||||||||| |||||||||||||    
T  7993678 cgaggttgagttctttgagcaaagggaaacaattggcaatgagtaac 7993632  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 45 - 125
Target Start/End: Original strand, 7132143 - 7132223
Alignment:
Q  45 aagattcaaatgttgaatacatggacactttgataacagagagtgaattccattaatgaaatcagttcgattcttgaccaa 125  Q
    ||||||||||||||| |||||| | ||||| ||||||| | ||||||||||||||||||| | |||| |||| || |||||    
T  7132143 aagattcaaatgttgtatacatcgccacttggataacatacagtgaattccattaatgaagttagtttgattgttcaccaa 7132223  T

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Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 205 - 248
Target Start/End: Original strand, 6432759 - 6432802
Alignment:
Q  205 aggttgagttctttgagcaatgggaaacaatcggcaatgagtaa 248  Q
    |||||||||| ||||||||| |||||||||||||||||||||||    
T  6432759 aggttgagttgtttgagcaaagggaaacaatcggcaatgagtaa 6432802  T

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Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 45 - 111
Target Start/End: Original strand, 6423743 - 6423809
Alignment:
Q  45 aagattcaaatgttgaatacatggacactttgataacagagagtgaattccattaatgaaatcagtt 111  Q
    ||||||||||||||| |||||| ||||||| ||||||| |  | |||||||||||||||||| ||||    
T  6423743 aagattcaaatgttgtatacattgacacttggataacaaattgcgaattccattaatgaaattagtt 6423809  T

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Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 121
Target Start/End: Original strand, 6410532 - 6410608
Alignment:
Q  45 aagattcaaatgttgaatacatggacactttgataacagagagtgaattccattaatgaaatcagttcgattcttga 121  Q
    ||||| || |||||| | |||| | ||||| ||||||||| ||||||||||||||||||||| || ||||| |||||    
T  6410532 aagatccatatgttgtaaacattggcacttggataacagatagtgaattccattaatgaaattagatcgatacttga 6410608  T

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Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 203 - 243
Target Start/End: Original strand, 19633024 - 19633064
Alignment:
Q  203 cgaggttgagttctttgagcaatgggaaacaatcggcaatg 243  Q
    |||||||||||||||| | ||||||||||||||||||||||    
T  19633024 cgaggttgagttctttcaacaatgggaaacaatcggcaatg 19633064  T

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Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 208 - 247
Target Start/End: Original strand, 6410627 - 6410666
Alignment:
Q  208 ttgagttctttgagcaatgggaaacaatcggcaatgagta 247  Q
    ||||||||||||||||||||||||||||| |||| |||||    
T  6410627 ttgagttctttgagcaatgggaaacaatcagcaaagagta 6410666  T

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Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 204 - 235
Target Start/End: Original strand, 6423833 - 6423864
Alignment:
Q  204 gaggttgagttctttgagcaatgggaaacaat 235  Q
    ||||||||||||||||||||||||||||||||    
T  6423833 gaggttgagttctttgagcaatgggaaacaat 6423864  T

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Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 110
Target Start/End: Original strand, 6403407 - 6403472
Alignment:
Q  45 aagattcaaatgttgaatacatggacactttgataacagagagtgaattccattaatgaaatcagt 110  Q
    ||||| ||||||||| ||||||  |||||| |||||||||||||  ||||||||||| || |||||    
T  6403407 aagatccaaatgttgtatacatctacacttggataacagagagtatattccattaataaagtcagt 6403472  T

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Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 248
Target Start/End: Original strand, 6403502 - 6403547
Alignment:
Q  203 cgaggttgagttctttgagcaatgggaaacaatcggcaatgagtaa 248  Q
    |||||||||||| |||||||   |||||||||||||||||||||||    
T  6403502 cgaggttgagttgtttgagcttagggaaacaatcggcaatgagtaa 6403547  T

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Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 104
Target Start/End: Original strand, 6427025 - 6427078
Alignment:
Q  51 caaatgttgaatacatggacactttgataacagagagtgaattccattaatgaa 104  Q
    ||||||||| |||||||||||||| ||||||| | ||||||||  |||||||||    
T  6427025 caaatgttgtatacatggacacttggataacatacagtgaattgaattaatgaa 6427078  T

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Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 97
Target Start/End: Complemental strand, 6594176 - 6594124
Alignment:
Q  45 aagattcaaatgttgaatacatggacactttgataacagagagtgaattccat 97  Q
    ||||||||||||||| |||||| ||||||| ||||||| |||||  |||||||    
T  6594176 aagattcaaatgttgtatacatcgacacttggataacaaagagtacattccat 6594124  T

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Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 249
Target Start/End: Original strand, 7132234 - 7132278
Alignment:
Q  205 aggttgagttctttgagcaatgggaaacaatcggcaatgagtaac 249  Q
    |||||||||||||| |||| ||| |||||||||||||| ||||||    
T  7132234 aggttgagttctttaagcattggaaaacaatcggcaataagtaac 7132278  T

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Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 249
Target Start/End: Original strand, 7135157 - 7135201
Alignment:
Q  205 aggttgagttctttgagcaatgggaaacaatcggcaatgagtaac 249  Q
    ||||||||||||||| ||| ||| |||||||||||||| ||||||    
T  7135157 aggttgagttctttgtgcattggaaaacaatcggcaataagtaac 7135201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 249
Target Start/End: Original strand, 7138080 - 7138124
Alignment:
Q  205 aggttgagttctttgagcaatgggaaacaatcggcaatgagtaac 249  Q
    |||||||||||||| |||| ||| |||||||||||||| ||||||    
T  7138080 aggttgagttctttaagcattggaaaacaatcggcaataagtaac 7138124  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 208 - 249
Target Start/End: Original strand, 17205662 - 17205703
Alignment:
Q  208 ttgagttctttgagcaatgggaaacaatcggcaatgagtaac 249  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  17205662 ttgagttctttgagcaaagggaaacaatcggcaatgagtaac 17205703  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 204 - 249
Target Start/End: Original strand, 30827723 - 30827768
Alignment:
Q  204 gaggttgagttctttgagcaatgggaaacaatcggcaatgagtaac 249  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||||    
T  30827723 gaggttgagttgtttgagcaaagggaaacaatcggcaatgagtaac 30827768  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 203 - 246
Target Start/End: Original strand, 33161122 - 33161165
Alignment:
Q  203 cgaggttgagttctttgagcaatgggaaacaatcggcaatgagt 246  Q
    |||||||||||| ||||||||| |||||||||||||||| ||||    
T  33161122 cgaggttgagttttttgagcaaagggaaacaatcggcaacgagt 33161165  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 249
Target Start/End: Original strand, 7555124 - 7555168
Alignment:
Q  205 aggttgagttctttgagcaatgggaaacaatcggcaatgagtaac 249  Q
    ||||||||||||| |||||| |||||||| || ||||||||||||    
T  7555124 aggttgagttcttcgagcaaagggaaacattcagcaatgagtaac 7555168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 210 - 247
Target Start/End: Complemental strand, 10634004 - 10633967
Alignment:
Q  210 gagttctttgagcaatgggaaacaatcggcaatgagta 247  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  10634004 gagttctttgagcaaagggaaacaatcggcaatgagta 10633967  T

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