View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1596_low_99 (Length: 248)
Name: NF1596_low_99
Description: NF1596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1596_low_99 |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 23 - 235
Target Start/End: Complemental strand, 51729729 - 51729517
Alignment:
| Q |
23 |
cggtatatatgggaccttactagatagataattagcacaatggcatgaagatataatttgattctcactacgtttccttccccttaatggacatagaaag |
122 |
Q |
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| T |
51729729 |
cggtatatacgggaccttactagatagataattagcacaatggcatgaagatataatttgattctcactacgtttccttccccttaatggacatagaaag |
51729630 |
T |
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| Q |
123 |
agaagaaagtgatagagagatcattaccatagatctactacgtgataagtcgaacgagatcatcatacataaatgaacatcctgtctagcatattttatc |
222 |
Q |
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| T |
51729629 |
agaagaaagtgacagagagatcattaccatagatctactacgtgataagtcgaacgagatcatcatacataaatgaacatcctgtctagcatattttatc |
51729530 |
T |
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| Q |
223 |
cgaaaggtctgtg |
235 |
Q |
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| T |
51729529 |
cgaaaggtctgtg |
51729517 |
T |
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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 227
Target Start/End: Complemental strand, 351475 - 351423
Alignment:
| Q |
175 |
aacgagatcatcatacataaatgaacatcctgtctagcatattttatccgaaa |
227 |
Q |
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||||||| |||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
351475 |
aacgagaccatcatacataaatgaacatcctgccgagcatattttatccgaaa |
351423 |
T |
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