View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15970_high_11 (Length: 254)
Name: NF15970_high_11
Description: NF15970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15970_high_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 13 - 233
Target Start/End: Complemental strand, 9450893 - 9450673
Alignment:
| Q |
13 |
agcataggtacaagaacaagatgaagttagaactctctttgagagaatatatgaaagttgcaaaattacaaagtaaagctaaataatctaatgtaccttc |
112 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9450893 |
agcaaaggtacaagaacaagatgaagttagaactctctttgagagaatatatgaaagttgcaaaattacaaagtaaagctaaataatctaatgtaccttc |
9450794 |
T |
|
| Q |
113 |
taaatgtttaagagtatgggttatatagactggttttcatgcatttagtagccacttttccatcataactagtagttgcattcaaaactcactcaagtga |
212 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |
|
|
| T |
9450793 |
taaatgcttaagagtatgggttatatagactggttttcatgcatttagtagccacttttccatcataactaatagttgcattcaaaactcactcaagaga |
9450694 |
T |
|
| Q |
213 |
caaaagcgttaccgacaaaaa |
233 |
Q |
| |
|
|||||| |||||||||||||| |
|
|
| T |
9450693 |
caaaagagttaccgacaaaaa |
9450673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University